You are here

Home

KJC3_004153-T1, KJC3_004153-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004153-T1
Unique NameKJC3_004153-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4078003..4079466-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004153-T1 ID=KJC3_004153-T1|Name=KJC3_004153-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1464bp|location=Sequence derived from alignment at ch3:4078003..4079466- (Aspergillus niger KJC3)
ATTTCACTAATAATAACCATTGGCCGGATCCCCGCTTCGCGCTCGAAAGA
TACCTGGACATTCACACTCGAGATTCTGACTCGTCTGAACGGACCACGGC
TTTTTAATGCGCCGGACGAGTCTTTTTCTGCGCACAAGCCTAAATCACTA
TAACCTTGGATTTTGATACCTAAGCATCGTATTGGTGTTTTCTCTGTATT
ACTTTAGGCGCCACCAGAAACCTCCACAGTCATCTAGGAAGACTGTTGAG
GAGATGTCCCGATCTCTTGGGATGTTGTACGCTGGCTCTCAACAGCTTCT
CAAAATTACATACTGATTGATAATCTTAGTGCCCTGAGTGCCGGAATGGT
ACATATCAATGTGGGAGCCGACGAGACTCCGTTCGATGTCCACGTGGAGT
TGTTGTGCAGTTGCTCTCCATATTTCGACTCAATATACGGTGATCGTACT
AAGAACCCCATCCCAAGCGACCCTGTCTGCTTTCCGGATGAGGATCCAGT
TGTCTTTGCCGAGCTGTTAGCTTGGATGTATTATGGTGACATTCCTATCG
ACTTGCCTTCACGTACTAGCATTCACTTCTTGCTACAACTTTGGATCCTT
GCTGGAACCTTCGAGATTGCCCGACTGCAGAATCAAGTCATACACCTCTG
TAGAACTGAGATCGCTAAAGTCCCTGGTCGAACCTTCAGTAGTGATGATA
TCGATTTCGTCTACAGCCATACGTTGCCTCAGTCTCCGTTGCGTTTACTT
TTGGTTGATAATTGGGCACGGAATGCAACCCAAGAGCACTTCACGAGTTG
TCAGAAGAATCTTCCATATCCGTTCCTCGAAGAGCTTTGCCGTGCTTTCA
TTGAAAGGAAAGGAAATGTTAATAATGCGGAGGGAGAAATTCATTCTGTT
GAACGCTACAATATTCACCCTCCGCCACCGGAAGACCAGAACGATAGATT
GATGCCTCGAGAACGTGTTTCAGAATTTCCCCGGACTGCACCCCCAGAGA
AATTGAGAAACAGGAAGATTGCACGCCCCTCTCCCCGTCTCAACAAAGCT
TCCCTTACATCGCCGTTACGCGCCATGACACCCAACTCCGTTGAGGAGAA
TGATCCAAAGAGTGAGGTGTCATCTCAAATGAGTCATTTGCAAATCTGAT
TTTCTATTCCCACGTCTTTAGCAACTAAATGTTTTCTCGCAATGTTCAGT
GTAAGGTGTTCTCCTTGACTTGTCACTTATTCTCTCATGTCCATTGTCTT
CCTGCAAATCACGGTTTGCAAAGGCACTTGCATTTTGGGAACATCATGAT
ACCTGTTGCGACACCGGTATCTACTTGTCTACTTCTTTCCATCTTTATTA
GTGCTATAAGTGATGCTATTATGCTTGATGGTATCTTAAAATGCTTTCCG
GATAAGATATATAATCTCCAGAACTATCAACATTATCATATATTACATCT
CACCTACGATGCAC
back to top

Coding sequence (CDS) from alignment at ch3:4078003..4079466-

>KJC3_004153-T1 ID=KJC3_004153-T1|Name=KJC3_004153-T1|organism=Aspergillus niger KJC3|type=CDS|length=1686bp|location=Sequence derived from alignment at ch3:4078003..4079466- (Aspergillus niger KJC3)
TGCCCTGAGTGCCGGAATGGTACATATCAATGTGGGAGCCGACGAGACTC
CGTTCGATGTCCACGTGGAGTTGTTGTGCAGTTGCTCTCCATATTTCGAC
TCAATATACGGTGATCGTACTAAGAACCCCATCCCAAGCGACCCTGTCTG
CTTTCCGGATGAGGATCCAGTTGTCTTTGCCGAGCTGTTAGCTTGGATGT
ATTATGGTGACATTCCTATCGACTTGCCTTCACGTACTAGCATTCACTTC
TTGCTACAACTTTGGATCCTTGCTGGAACCTTCGAGATTGCCCGACTGCA
GAATCAAGTCATACACCTCTGTAGAACTGAGATCGCTAAAGTCCCTGGTC
GAACCTTCAGTAGTGATGATATCGATTTCGTCTACAGCCATACGTTGCCT
CAGTCTCCGTTGCGTTTACTTTTGGTTGATAATTGGGCACGGAATGCAAC
CCAAGAGCACTTCACGAGTTGTCAGAAGAATCTTCCATATCCGTTCCTCG
AAGAGCTTTGCCGTGCTTTCATTGAAAGGAAAGGAAATGTTAATAATGCG
GAGGGAGAAATTCATTCTGTTGAACGCTACAATATTCACCCTCCGCCACC
GGAAGACCAGAACGATAGATTGATGCCTCGAGAACGTGTTTCAGAATTTC
CCCGGACTGCACCCCCAGAGAAATTGAGAAACAGGAAGATTGCACGCCCC
TCTCCCCGTCTCAACAAAGCTTCCCTTACATCGCCGTTACGCGCCATGAC
ACCCAACTCCGTTGAGGAGAATGATCCAAAGAGTGAGGTGTCATCTCAAA
TGAGTCATTTGCAAATCTGAATGTCCCGATCTCTTGGGATGTTTGCCCTG
AGTGCCGGAATGGTACATATCAATGTGGGAGCCGACGAGACTCCGTTCGA
TGTCCACGTGGAGTTGTTGTGCAGTTGCTCTCCATATTTCGACTCAATAT
ACGGTGATCGTACTAAGAACCCCATCCCAAGCGACCCTGTCTGCTTTCCG
GATGAGGATCCAGTTGTCTTTGCCGAGCTGTTAGCTTGGATGTATTATGG
TGACATTCCTATCGACTTGCCTTCACGTACTAGCATTCACTTCTTGCTAC
AACTTTGGATCCTTGCTGGAACCTTCGAGATTGCCCGACTGCAGAATCAA
GTCATACACCTCTGTAGAACTGAGATCGCTAAAGTCCCTGGTCGAACCTT
CAGTAGTGATGATATCGATTTCGTCTACAGCCATACGTTGCCTCAGTCTC
CGTTGCGTTTACTTTTGGTTGATAATTGGGCACGGAATGCAACCCAAGAG
CACTTCACGAGTTGTCAGAAGAATCTTCCATATCCGTTCCTCGAAGAGCT
TTGCCGTGCTTTCATTGAAAGGAAAGGAAATGTTAATAATGCGGAGGGAG
AAATTCATTCTGTTGAACGCTACAATATTCACCCTCCGCCACCGGAAGAC
CAGAACGATAGATTGATGCCTCGAGAACGTGTTTCAGAATTTCCCCGGAC
TGCACCCCCAGAGAAATTGAGAAACAGGAAGATTGCACGCCCCTCTCCCC
GTCTCAACAAAGCTTCCCTTACATCGCCGTTACGCGCCATGACACCCAAC
TCCGTTGAGGAGAATGATCCAAAGAGTGAGGTGTCATCTCAAATGAGTCA
TTTGCAAATCTGAATGTCCCGATCTCTTGGGATGTT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004153KJC3_004153Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004153-T1KJC3_004153-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004153-T1.cdsKJC3_004153-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004153-T1.utr3p1KJC3_004153-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004153-T1.exon2KJC3_004153-T1.exon2Aspergillus niger KJC3exon
KJC3_004153-T1.exon1KJC3_004153-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004153-T1.utr5p1KJC3_004153-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011333
DBxrefInterPro:IPR000210
DBxrefPFAM:PF00651
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4078003..4079466 -
Powered by Drupal