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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4088616..4091413+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004157-T1 ID=KJC3_004157-T1|Name=KJC3_004157-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2798bp|location=Sequence derived from alignment at ch3:4088616..4091413+ (Aspergillus niger KJC3)
GAATTTCCGTCTCGGATTTTTATCCTAAAAGTTAACTAAGCCTCTTGTTT
ATCCTCGTTCCTTACACAGAAAATGTTAGGCAATAACTTGGCCCACAACG
GTGCCATCCAGCAAGTCCCCGGATTTCTTCGGCGAAAGCGCAAAGCTGTC
AATTGCGAGGAATGCCGACGCTCTAAGTTGCGATGCGATCGCCAAAACCC
TTGTGGTGCGTGCAAGCGTCGCAAGCGCGAGTATAGTTGCTCCTACGAAG
CCCTGTCTGGCCCATCTGTATCAAGGAAAACTCACAGGCAGCCTGTAACT
ACTTCGGCGTCACCTGCCTTAAATGGTGGGGCAGGATCTCCGTCTACGCC
TAGACGAAAAGGTGTTTTCTCTTCAAATCTACGACCCGAACAGCCTACAT
CAGGATTAGAGAAATCATCTCCGGGTGTACACTGGGAAACTGTGCTTGAA
CGGCCTGTTCCCGAGGAGGATGTTAATGACACGCTATCACCCCTCTCAAT
CGGCCCTCGCATCTCTCTCCAGGAAATGATTGACTCGCTTCCGCCGAAGT
CTTGTTGCGACTATCTGGTCTCACACTTCTTTAAACATATATCCGCCCTG
TTTCCCATTCTGCATGGCCCAACTTTTCAGAAACAGTATACAGCGTTCAT
GCAACGGCCTCATGACGTCGACTTACCTTGGCTGGCTTTGCTTTTCGCGT
TATGTTCTTTGTCTCTGAACACTCTAGATGAAAGTGACCCCAGGCTAGCG
TGCGTCTGGTCTCAACTACCTTCGAATGTTACCCAAGGTGCAAGTACGGT
TCCTGTCACGGTTTCTGTGTCTCGCCGCCTGCTCCGGACTGCAATAACCT
GTCTCCTGCAGGGTGACTTCTTGATCCGGCACACTTTCAGCACGTTCGAA
GCTCTATTAATGGTAATATACAGCCTTTCTCACAATGAGTCCGTCGATCA
AGGCTGGGCCCTGTTAGGAATGGCGCTAAATATTGGCATTGCCTTGCGTT
GCAATGTGGAGCAGAAAAACATGGGCCCAATTGAGACCGAAAGACGGCGA
CGTTGTTGGGCTGGCCTCTTGACATTGCACACGTATCAGGGAATGCTATT
CCGGGACTTTGATATGTCATACCTTCTCGGCATTGAAGCTCCTCTACCTG
CTGATGTTAACGATGTCGATATCACCAGCGAAGGCATTGTGCAGCAGTCT
CGTAGCGAGCCCACACAGATGTCTGTCATGATGGCTAAGCTTCGGCTGTT
CCGGCTTTCCACCCAGATCTGTCGCCATACCTCGGGCCCTTCACGTCTCG
ACCAACAGGCCCTGCGTAATTTCGATGCTGCGATAGCGGACGAGCAAAAA
CAGTGGGACGCGGCCTATATGGTTGATGGTTCTCCAAACATTCTGGACTC
TAATCGCTACGCATATTGGTGCGTCTTGCAAACGTACGCGCATCATCTCT
ACCTCCTGCTACACCGACCGTTTCACCATTCCAAGGCGCCTTATTTTCTT
CCAATGTCCAGAGAAAGATGTATAAGTTCCAGCACAGCTTTGATTTCCCT
TCACAGACAACTTTACGAAGCTCCTATCCTCCGAGATTATTTCTGGCTGC
TCAGTGGGGTGACAAGTCTGAAAGCATTACATGCGGCCGTGGCCCTGAAT
TCGTGTCTCCAAGATGATACCGAACATAACTTGGACTCTTTTCGAGGGGA
GATCGAAAGTCTGATTGCCCGCATGGCAGATCTCTCAAGCCGAAGTCATA
TCTGTCTCCGAGCGTATCGAATACTCCGCCATTTACAGTAAGCTACCCAG
ATAAATTCTCAAATTAGCCAACTAAATCAGTGATCTATAGAGCCCAAGCA
GGGACGGGCGATGCCCAGACAGGGAGCTCGGAGACCCCGTTCGAAAATTT
ATTCGAAGATTTGACGGATATCCGGGAGTGGATGGATGCAGATCTGGTCG
ATTGGGTATGTTACCTCCCTCTAGATACTGAGCCTTTTGCTAATGATCAG
AATCTGGACGGACAATTCAACGTCTTTGCGCCATAATTAATTGTGGGCAT
GACGATATTGTGGGACTGGGCTATTCCGCATCGGGTCACTTCCGAGACAA
AGAGTACTCGATACCTGCCCAAGAAATCTCCAGCAGCGACTCGAGTACGT
TTGAGCACCATATACCCAATTTTCCAGAATATTTTGTGGTCTATCAGATC
AGAGGTTAAAATAAAGCCTAGTAGTTTATCTAGCAAACCGTGCATGTAGC
TTCCCACTTCCAGGAAGATGTCAATAGTAGCGCTTCCCGCTGAGCATACA
CCAGACCGTGAGAGGTACCTTCTTTGTCCTCGAGATTCCCTTCAGGAAGT
TCCATAGCAGAAACCCACTGTATGTATACTGAGACTTTTGCCTTCCATGT
TATGGACACGAGAAACGCGGAGATGGCAGATCATATCTGCTCTCATGCCC
TGGGCGGCCCTTTGCACCACTCGTTTTATCCAAGAATAAAGTTGGTTGGA
CTGAAGTAACGGGCTTTTCAGGATTGGATTCACTCTTCAAACCCCTCAAA
CTGGCTCAGACTACTCGTATAATAAATAATCTGCTACTGTATCGATCTTG
GTTCGTATTACCCCCGGCGCAGGATCTGAAGAACCAGATCACCGGTTGCC
CGATCACATACATCGCCATATTACGTGTTCGTTTGACATGATGAAAACCA
AGGCGCGGTGCTCTTTAAGATTTGCTTCTTTCGTGTAGCTCTCTTGTTTC
GTGATGCTCGTGTGCGTGCGTCTATTGGCCATCGTATGAGGTCTTCTG back to topCoding sequence (CDS) from alignment at ch3:4088616..4091413+ >KJC3_004157-T1 ID=KJC3_004157-T1|Name=KJC3_004157-T1|organism=Aspergillus niger KJC3|type=CDS|length=5598bp|location=Sequence derived from alignment at ch3:4088616..4091413+ (Aspergillus niger KJC3)
ATGTTAGGCAATAACTTGGCCCACAACGGTGCCATCCAGCAAGTCCCCGG
ATTTCTTCGGCGAAAGCGCAAAGCTGTCAATTGCGAGGAATGCCGACGCT
CTAAGTTGCGATGCGATCGCCAAAACCCTTGTGGTGCGTGCAAGCGTCGC
AAGCGCGAGTATAGTTGCTCCTACGAAGCCCTGTCTGGCCCATCTGTATC
AAGGAAAACTCACAGGCAGCCTGTAACTACTTCGGCGTCACCTGCCTTAA
ATGGTGGGGCAGGATCTCCGTCTACGCCTAGACGAAAAGGTGTTTTCTCT
TCAAATCTACGACCCGAACAGCCTACATCAGGATTAGAGAAATCATCTCC
GGGTGTACACTGGGAAACTGTGCTTGAACGGCCTGTTCCCGAGGAGGATG
TTAATGACACGCTATCACCCCTCTCAATCGGCCCTCGCATCTCTCTCCAG
GAAATGATTGACTCGCTTCCGCCGAAGTCTTGTTGCGACTATCTGGTCTC
ACACTTCTTTAAACATATATCCGCCCTGTTTCCCATTCTGCATGGCCCAA
CTTTTCAGAAACAGTATACAGCGTTCATGCAACGGCCTCATGACGTCGAC
TTACCTTGGCTGGCTTTGCTTTTCGCGTTATGTTCTTTGTCTCTGAACAC
TCTAGATGAAAGTGACCCCAGGCTAGCGTGCGTCTGGTCTCAACTACCTT
CGAATGTTACCCAAGGTGCAAGTACGGTTCCTGTCACGGTTTCTGTGTCT
CGCCGCCTGCTCCGGACTGCAATAACCTGTCTCCTGCAGGGTGACTTCTT
GATCCGGCACACTTTCAGCACGTTCGAAGCTCTATTAATGGTAATATACA
GCCTTTCTCACAATGAGTCCGTCGATCAAGGCTGGGCCCTGTTAGGAATG
GCGCTAAATATTGGCATTGCCTTGCGTTGCAATGTGGAGCAGAAAAACAT
GGGCCCAATTGAGACCGAAAGACGGCGACGTTGTTGGGCTGGCCTCTTGA
CATTGCACACGTATCAGGGAATGCTATTCCGGGACTTTGATATGTCATAC
CTTCTCGGCATTGAAGCTCCTCTACCTGCTGATGTTAACGATGTCGATAT
CACCAGCGAAGGCATTGTGCAGCAGTCTCGTAGCGAGCCCACACAGATGT
CTGTCATGATGGCTAAGCTTCGGCTGTTCCGGCTTTCCACCCAGATCTGT
CGCCATACCTCGGGCCCTTCACGTCTCGACCAACAGGCCCTGCGTAATTT
CGATGCTGCGATAGCGGACGAGCAAAAACAGTGGGACGCGGCCTATATGG
TTGATGGTTCTCCAAACATTCTGGACTCTAATCGCTACGCATATTGGTGC
GTCTTGCAAACGTACGCGCATCATCTCTACCTCCTGCTACACCGACCGTT
TCACCATTCCAAGGCGCCTTATTTTCTTCCAATGTCCAGAGAAAGATGTA
TAAGTTCCAGCACAGCTTTGATTTCCCTTCACAGACAACTTTACGAAGCT
CCTATCCTCCGAGATTATTTCTGGCTGCTCAGTGGGGTGACAAGTCTGAA
AGCATTACATGCGGCCGTGGCCCTGAATTCGTGTCTCCAAGATGATACCG
AACATAACTTGGACTCTTTTCGAGGGGAGATCGAAAGTCTGATTGCCCGC
ATGGCAGATCTCTCAAGCCGAAGTCATATCTGTCTCCGAGCGTATCGAAT
ACTCCGCCATTTACAAGCCCAAGCAGGGACGGGCGATGCCCAGACAGGGA
GCTCGGAGACCCCGTTCGAAAATTTATTCGAAGATTTGACGGATATCCGG
GAGTGGATGGATGCAGATCTGGTCGATTGGAATCTGGACGGACAATTCAA
CGTCTTTGCGCCATAAATGTTAGGCAATAACTTGGCCCACAACGGTGCCA
TCCAGCAAGTCCCCGGATTTCTTCGGCGAAAGCGCAAAGCTGTCAATTGC
GAGGAATGCCGACGCTCTAAGTTGCGATGCGATCGCCAAAACCCTTGTGG
TGCGTGCAAGCGTCGCAAGCGCGAGTATAGTTGCTCCTACGAAGCCCTGT
CTGGCCCATCTGTATCAAGGAAAACTCACAGGCAGCCTGTAACTACTTCG
GCGTCACCTGCCTTAAATGGTGGGGCAGGATCTCCGTCTACGCCTAGACG
AAAAGGTGTTTTCTCTTCAAATCTACGACCCGAACAGCCTACATCAGGAT
TAGAGAAATCATCTCCGGGTGTACACTGGGAAACTGTGCTTGAACGGCCT
GTTCCCGAGGAGGATGTTAATGACACGCTATCACCCCTCTCAATCGGCCC
TCGCATCTCTCTCCAGGAAATGATTGACTCGCTTCCGCCGAAGTCTTGTT
GCGACTATCTGGTCTCACACTTCTTTAAACATATATCCGCCCTGTTTCCC
ATTCTGCATGGCCCAACTTTTCAGAAACAGTATACAGCGTTCATGCAACG
GCCTCATGACGTCGACTTACCTTGGCTGGCTTTGCTTTTCGCGTTATGTT
CTTTGTCTCTGAACACTCTAGATGAAAGTGACCCCAGGCTAGCGTGCGTC
TGGTCTCAACTACCTTCGAATGTTACCCAAGGTGCAAGTACGGTTCCTGT
CACGGTTTCTGTGTCTCGCCGCCTGCTCCGGACTGCAATAACCTGTCTCC
TGCAGGGTGACTTCTTGATCCGGCACACTTTCAGCACGTTCGAAGCTCTA
TTAATGGTAATATACAGCCTTTCTCACAATGAGTCCGTCGATCAAGGCTG
GGCCCTGTTAGGAATGGCGCTAAATATTGGCATTGCCTTGCGTTGCAATG
TGGAGCAGAAAAACATGGGCCCAATTGAGACCGAAAGACGGCGACGTTGT
TGGGCTGGCCTCTTGACATTGCACACGTATCAGGGAATGCTATTCCGGGA
CTTTGATATGTCATACCTTCTCGGCATTGAAGCTCCTCTACCTGCTGATG
TTAACGATGTCGATATCACCAGCGAAGGCATTGTGCAGCAGTCTCGTAGC
GAGCCCACACAGATGTCTGTCATGATGGCTAAGCTTCGGCTGTTCCGGCT
TTCCACCCAGATCTGTCGCCATACCTCGGGCCCTTCACGTCTCGACCAAC
AGGCCCTGCGTAATTTCGATGCTGCGATAGCGGACGAGCAAAAACAGTGG
GACGCGGCCTATATGGTTGATGGTTCTCCAAACATTCTGGACTCTAATCG
CTACGCATATTGGTGCGTCTTGCAAACGTACGCGCATCATCTCTACCTCC
TGCTACACCGACCGTTTCACCATTCCAAGGCGCCTTATTTTCTTCCAATG
TCCAGAGAAAGATGTATAAGTTCCAGCACAGCTTTGATTTCCCTTCACAG
ACAACTTTACGAAGCTCCTATCCTCCGAGATTATTTCTGGCTGCTCAGTG
GGGTGACAAGTCTGAAAGCATTACATGCGGCCGTGGCCCTGAATTCGTGT
CTCCAAGATGATACCGAACATAACTTGGACTCTTTTCGAGGGGAGATCGA
AAGTCTGATTGCCCGCATGGCAGATCTCTCAAGCCGAAGTCATATCTGTC
TCCGAGCGTATCGAATACTCCGCCATTTACAAGCCCAAGCAGGGACGGGC
GATGCCCAGACAGGGAGCTCGGAGACCCCGTTCGAAAATTTATTCGAAGA
TTTGACGGATATCCGGGAGTGGATGGATGCAGATCTGGTCGATTGGAATC
TGGACGGACAATTCAACGTCTTTGCGCCATAAATGTTAGGCAATAACTTG
GCCCACAACGGTGCCATCCAGCAAGTCCCCGGATTTCTTCGGCGAAAGCG
CAAAGCTGTCAATTGCGAGGAATGCCGACGCTCTAAGTTGCGATGCGATC
GCCAAAACCCTTGTGGTGCGTGCAAGCGTCGCAAGCGCGAGTATAGTTGC
TCCTACGAAGCCCTGTCTGGCCCATCTGTATCAAGGAAAACTCACAGGCA
GCCTGTAACTACTTCGGCGTCACCTGCCTTAAATGGTGGGGCAGGATCTC
CGTCTACGCCTAGACGAAAAGGTGTTTTCTCTTCAAATCTACGACCCGAA
CAGCCTACATCAGGATTAGAGAAATCATCTCCGGGTGTACACTGGGAAAC
TGTGCTTGAACGGCCTGTTCCCGAGGAGGATGTTAATGACACGCTATCAC
CCCTCTCAATCGGCCCTCGCATCTCTCTCCAGGAAATGATTGACTCGCTT
CCGCCGAAGTCTTGTTGCGACTATCTGGTCTCACACTTCTTTAAACATAT
ATCCGCCCTGTTTCCCATTCTGCATGGCCCAACTTTTCAGAAACAGTATA
CAGCGTTCATGCAACGGCCTCATGACGTCGACTTACCTTGGCTGGCTTTG
CTTTTCGCGTTATGTTCTTTGTCTCTGAACACTCTAGATGAAAGTGACCC
CAGGCTAGCGTGCGTCTGGTCTCAACTACCTTCGAATGTTACCCAAGGTG
CAAGTACGGTTCCTGTCACGGTTTCTGTGTCTCGCCGCCTGCTCCGGACT
GCAATAACCTGTCTCCTGCAGGGTGACTTCTTGATCCGGCACACTTTCAG
CACGTTCGAAGCTCTATTAATGGTAATATACAGCCTTTCTCACAATGAGT
CCGTCGATCAAGGCTGGGCCCTGTTAGGAATGGCGCTAAATATTGGCATT
GCCTTGCGTTGCAATGTGGAGCAGAAAAACATGGGCCCAATTGAGACCGA
AAGACGGCGACGTTGTTGGGCTGGCCTCTTGACATTGCACACGTATCAGG
GAATGCTATTCCGGGACTTTGATATGTCATACCTTCTCGGCATTGAAGCT
CCTCTACCTGCTGATGTTAACGATGTCGATATCACCAGCGAAGGCATTGT
GCAGCAGTCTCGTAGCGAGCCCACACAGATGTCTGTCATGATGGCTAAGC
TTCGGCTGTTCCGGCTTTCCACCCAGATCTGTCGCCATACCTCGGGCCCT
TCACGTCTCGACCAACAGGCCCTGCGTAATTTCGATGCTGCGATAGCGGA
CGAGCAAAAACAGTGGGACGCGGCCTATATGGTTGATGGTTCTCCAAACA
TTCTGGACTCTAATCGCTACGCATATTGGTGCGTCTTGCAAACGTACGCG
CATCATCTCTACCTCCTGCTACACCGACCGTTTCACCATTCCAAGGCGCC
TTATTTTCTTCCAATGTCCAGAGAAAGATGTATAAGTTCCAGCACAGCTT
TGATTTCCCTTCACAGACAACTTTACGAAGCTCCTATCCTCCGAGATTAT
TTCTGGCTGCTCAGTGGGGTGACAAGTCTGAAAGCATTACATGCGGCCGT
GGCCCTGAATTCGTGTCTCCAAGATGATACCGAACATAACTTGGACTCTT
TTCGAGGGGAGATCGAAAGTCTGATTGCCCGCATGGCAGATCTCTCAAGC
CGAAGTCATATCTGTCTCCGAGCGTATCGAATACTCCGCCATTTACAAGC
CCAAGCAGGGACGGGCGATGCCCAGACAGGGAGCTCGGAGACCCCGTTCG
AAAATTTATTCGAAGATTTGACGGATATCCGGGAGTGGATGGATGCAGAT
CTGGTCGATTGGAATCTGGACGGACAATTCAACGTCTTTGCGCCATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004157-T1.utr5p1 | KJC3_004157-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004157-T1.utr3p1 | KJC3_004157-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4088616..4091413 + |
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