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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4262693..4264639+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004222-T1 ID=KJC3_004222-T1|Name=KJC3_004222-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1947bp|location=Sequence derived from alignment at ch3:4262693..4264639+ (Aspergillus niger KJC3)
CTGAACTCTAATATCGCATCGACCTGCCGTAGTGCCCGGCACTGGAACTC
TTTGCTCGCCAGAGCTTGCTTTAAAAGCAGAAAGTCGTACAATTACAATA
TGAGCACTTAACAGTTACCGTTGGATATCTGTGACTGACCACTATGGACC
TGGAGACGAACAAACGCAGCAGTAAAACATCTTCCCGCTCTCAACAAGGA
TGCACAAACTGCCGACGGAGCAGGCTTAAATGCGACGAGAAAAAGCCAAT
CTGCACCCGATGCTGGCAAAAGGATCTACAATGCCAGACAATATTCCGGC
TGAAATGGGAGTCAAATTATCGTGATCGAGGTATCGCCTTTGGCAGGTCG
AGGCTGAATAGGAAGTCTCCTGATCACCCAACTGGTGCTCCGGGACGGGA
TTCGACTTTCCCCAAAGACACTACATGGGTTGCGATCCCGACGGTTCAGT
CTTGGGCATTCGTGAATAACGATACTTCCTTGATTCGACGACTTTATGCC
GAGGAGCAAGGATACACCGAACCACATCTTCTCCCGGCCGTCGATGCTAG
AACGGCCCTTGGGGAGCTGGGGCCTCGTGAGCCAGCATCGTCTTTCACAA
CATCGCCACCCGATACCGCTCAATTAATGGATATAAAAGAAGCAATGTTA
CAGAACTTACAATCACCCCTCTCACCATTTCCATCCCTAGATGATCTGGG
AAATCAAGTACTGTTCGACTTTTACGTGAACCAGATATGTCCTCGAACAG
TACAGAGTCCTCTATCCATGTCACCCTTTGCCTCAGTCATTCTTCCCTAT
TGTGTATCCGCTCCGCCCACAGTTCTGCAGGCAATACAGGCGCTGGCCGC
CTGTCACTGGTCCCAGAGCGACCCAAGGTATAGCGAACTTTCTCTGCAAC
TAAAGGCTCGAGTTCTGAACCATCTCCGACATCGTATCAATACGCATCCC
CAGGATATAGTCACAGAAGACCCTGAAATATTGGTCATTATGATGTTTTT
ATGTTTATATGACATTGTTGATGACTGCAATCAGCAGTGGATTATACATC
TTCAGGGGGCAAAAGATATCATTCGACTTCGCCGACGACAGCAGATTTTA
TTGAAAGGTGCAACGCAAGGTGTACAGCAAGACCCAGTATCGTCTTTCAC
GGAGCTTTTCTTCGCTTTCCAGGACGTGATGGGGCGGACTGCCTGTGGAA
AAGCGGAGCTTTTTGGATCGACCTATTGGCGTGAAGAAGATACGACCATA
AATCCTTGGATGGGTTGCAGCCCTGCTCTTGTCTCTGTCTTATTCTCAAT
CATGGATCTGAGTCGGTCTAGACGGCATGTCATCGCCGATGAAGGTCACG
AAGCTTTTAATGTTAGAGCTTCCGCTCTGATCAACAGATTGAAGGATATC
AAACAGGAGATGCGAATCGATGGAGACAGCCAGGTCATTCAGAGAATTGC
CGAGCTAAAGAGAGTGACTTCAATTGTCTATCTAAACTGCGCATTGTATG
GCTTGACACCATCCGATTCCATAACCAAGACCTACGTGCGCAAAATATTG
AAAGATATTGTTGAACTACTCGCAATGGAGCCATCTTGTCAGGTCGTCTG
GCCTCTTTTTGTTGCTGCCGTGGAACTAGATCCTCTTGACCTTGCGATCA
TGTTAGATCCGGATACTGGGAAAATGACGGACGGACGAAGGCTTGTCTTG
GAACTGCTTATGAAGATGAGTAAAAGCAGTGTTTCTAGTGTGACTCGGGC
GCGTGTCGTCGTCGAGCAGGTGTGGAAGTCCCGCGATTTTTGTTTGTCAA
AGTCTTCCCGAGAAAGGTCACCAGCGTCTATCACGGATTTAAATGACTGG
GAAGAGTATGTTATGCCTGTTAGTGATGCTTTGAGCCTGGCATAAGCGCG
CAGGTTAGCAAAAGTTAGACGAAATAAGCTCAAACGTAAAAAAAAAA back to topCoding sequence (CDS) from alignment at ch3:4262693..4264639+ >KJC3_004222-T1 ID=KJC3_004222-T1|Name=KJC3_004222-T1|organism=Aspergillus niger KJC3|type=CDS|length=1752bp|location=Sequence derived from alignment at ch3:4262693..4264639+ (Aspergillus niger KJC3)
ATGGACCTGGAGACGAACAAACGCAGCAGTAAAACATCTTCCCGCTCTCA
ACAAGGATGCACAAACTGCCGACGGAGCAGGCTTAAATGCGACGAGAAAA
AGCCAATCTGCACCCGATGCTGGCAAAAGGATCTACAATGCCAGACAATA
TTCCGGCTGAAATGGGAGTCAAATTATCGTGATCGAGGTATCGCCTTTGG
CAGGTCGAGGCTGAATAGGAAGTCTCCTGATCACCCAACTGGTGCTCCGG
GACGGGATTCGACTTTCCCCAAAGACACTACATGGGTTGCGATCCCGACG
GTTCAGTCTTGGGCATTCGTGAATAACGATACTTCCTTGATTCGACGACT
TTATGCCGAGGAGCAAGGATACACCGAACCACATCTTCTCCCGGCCGTCG
ATGCTAGAACGGCCCTTGGGGAGCTGGGGCCTCGTGAGCCAGCATCGTCT
TTCACAACATCGCCACCCGATACCGCTCAATTAATGGATATAAAAGAAGC
AATGTTACAGAACTTACAATCACCCCTCTCACCATTTCCATCCCTAGATG
ATCTGGGAAATCAAGTACTGTTCGACTTTTACGTGAACCAGATATGTCCT
CGAACAGTACAGAGTCCTCTATCCATGTCACCCTTTGCCTCAGTCATTCT
TCCCTATTGTGTATCCGCTCCGCCCACAGTTCTGCAGGCAATACAGGCGC
TGGCCGCCTGTCACTGGTCCCAGAGCGACCCAAGGTATAGCGAACTTTCT
CTGCAACTAAAGGCTCGAGTTCTGAACCATCTCCGACATCGTATCAATAC
GCATCCCCAGGATATAGTCACAGAAGACCCTGAAATATTGGTCATTATGA
TGTTTTTATGTTTATATGACATTGTTGATGACTGCAATCAGCAGTGGATT
ATACATCTTCAGGGGGCAAAAGATATCATTCGACTTCGCCGACGACAGCA
GATTTTATTGAAAGGTGCAACGCAAGGTGTACAGCAAGACCCAGTATCGT
CTTTCACGGAGCTTTTCTTCGCTTTCCAGGACGTGATGGGGCGGACTGCC
TGTGGAAAAGCGGAGCTTTTTGGATCGACCTATTGGCGTGAAGAAGATAC
GACCATAAATCCTTGGATGGGTTGCAGCCCTGCTCTTGTCTCTGTCTTAT
TCTCAATCATGGATCTGAGTCGGTCTAGACGGCATGTCATCGCCGATGAA
GGTCACGAAGCTTTTAATGTTAGAGCTTCCGCTCTGATCAACAGATTGAA
GGATATCAAACAGGAGATGCGAATCGATGGAGACAGCCAGGTCATTCAGA
GAATTGCCGAGCTAAAGAGAGTGACTTCAATTGTCTATCTAAACTGCGCA
TTGTATGGCTTGACACCATCCGATTCCATAACCAAGACCTACGTGCGCAA
AATATTGAAAGATATTGTTGAACTACTCGCAATGGAGCCATCTTGTCAGG
TCGTCTGGCCTCTTTTTGTTGCTGCCGTGGAACTAGATCCTCTTGACCTT
GCGATCATGTTAGATCCGGATACTGGGAAAATGACGGACGGACGAAGGCT
TGTCTTGGAACTGCTTATGAAGATGAGTAAAAGCAGTGTTTCTAGTGTGA
CTCGGGCGCGTGTCGTCGTCGAGCAGGTGTGGAAGTCCCGCGATTTTTGT
TTGTCAAAGTCTTCCCGAGAAAGGTCACCAGCGTCTATCACGGATTTAAA
TGACTGGGAAGAGTATGTTATGCCTGTTAGTGATGCTTTGAGCCTGGCAT
AA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004222-T1.utr5p1 | KJC3_004222-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004222-T1.utr3p1 | KJC3_004222-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4262693..4264639 + |
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