You are here

Home

KJC3_004230-T2, KJC3_004230-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004230-T2
Unique NameKJC3_004230-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4281076..4283619+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004230-T2 ID=KJC3_004230-T2|Name=KJC3_004230-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2544bp|location=Sequence derived from alignment at ch3:4281076..4283619+ (Aspergillus niger KJC3)
GAACCTGGCGATATTCAACAAAATAGCCGAGGTAGGGGAACGACGGTTCA
GTCAGTCATCTGTACAGACGCTCAGTGGTCGAAAAGTAGCTAACTTGTTC
GAACAGGCTATTGTATCCGTGCCATTCGCAGATCTCAATGCAGATTGCGT
TGGCCAAGCCAGACATGGGCTGCAATTGCCTAAGCTTCGCTGTCACGGAA
TTGGAATGATTGACAAAGATGCTGCGCCGTAACCGATTGAGATATGAGTT
GCGTTCTGCTTACATCGCTTAATTAGACATGATCGGGATACTCCTAGCTG
CTTCACCCTCAGCACCTTTCTTGCGATATCGGACAACCGCAACTGCAGAA
ACATTGTTATCTCAATTATGGGGCATCGACCAGCCCTCTTTATCTATTTA
TCTCCCACAATGGCCATTACCAAATTCAATGAGGCTTCTGGGGTTGGGCT
TGGCGGCCCAGGGACTCCCGACTGGCTGTTGACCCGAGGTCCAACAACCC
CCATCGGCCGGATCCGATGGAAAGGCAGCCGGCAGGTGGAGAAAAGTCCA
ACGACGATCCCCAAATTCTCCAGCGGGGAAAAGGACAAGACGCCTGCCAG
CTTGGCGATCGATGCCTGTCTCTCGCGATCCTTTGACTTTGGCACAGCTT
CGGTTACAGGAATCCTCTTCTAGTCCGGAATGCCCCAAGTCCACGCGACA
GACGGGCGCCGCCGATGGCCGACCCATCTGCAAATTGCTGGGACGCTTTT
TATAAAATGTCCGCACCGGAGACCAGGGTTCAACGGCGTGAGCCAAGTCC
AATTGATCACTACATGCGGGGACATCCTGGCTGATGTCGCGATCGTTGCA
TAGAATCTTCTACTGCATGTCTTAGCCATGCAACCATACTTCGGCCTACG
CGGCGCTCTTTTGAATCGCGCCATCATCTGGCTGGTCGTCTGCCCGGCCT
TTGTGTGCTATGGATACAACCAGGGAGTGACGGGAGGTCTCCTCACGCTG
GAGTCGTTTGCGGAGACGTTTCCCCAGATGAACACTTTGACCACCACTGG
GGCCCAGCAGCACTACAACTCCACCATCCAGGGTAAGGCGCCCGCTCCCT
CACAACTGCCCTCCCTCTCCCGGTCTAACCATCCACAGGTACGGTGGTCG
CACTGTACACCGTCGGCGGCATATTCGGATCCCTGTCATGCATCTACCTC
GGTGATCTCCTCGGCCGGCGAAAGGTGATCTTTCTCACTTCAGCTATCTC
GATAATTGGGGCCCTGCTGATGGCCACTTCCTTCGGACTGGCTCAATTCA
TCGTGGCACGTGTTGTGCTGGGGCTGGGAACGGGCGGCTATGTTGCAACT
GTGCCCGTGTGGCAGGCCGAGATCTCGCAGGCGGGCAAGCGTGGTGCCCA
TGTAGTGACGGACGGTATCTTCATTGGGGCGGGAATCACAATCTCGCTGT
GGATTGATTTCGGGTTTTATTTCGTTACGGGTAACTCCGTGTCGTGGCGG
TTCCCGCTAGCCTTCCAGATCGTCCTGTCACTCATGGTGATGGCCTTCAT
CATATTTTTCCCAGAGTCGCCCCGGTGGCTGATAAAGCGGAACCGGACCG
AGGAGGCCCGCGAGATCCTGGCTGCGCTGGCCGACCTCGATCCGGACGAC
GAAAGCATCACACTGGCTGTGCGCGACATTGAGCGGTCGCTGGCCCTCTC
GGGAACGGGGTCGTGGAAGGACATGCTGAGCATGGGCGAACAGCGACTCT
TCCATCGGACGGTGTTGGCTGCAGCAGGTCAGATGTTCCAGCAAATGTGC
GGAATCAATCTCATCACCTTTTACGCCACAACCATTTTCCAACAGTACTT
GGGCCTGGATGCCATACCATCACGCATTCTGGCTGCCGCCATGTGCCTCA
CCCAGCCACTGGGTGGATTCCTCGCTTTCTTCACGATTGACCGGCTCGGT
CGGCGAGTCCTGATGCTGTGGAGTGCTGTGGGCATGTCCGCCTCGATGGC
CATCCTGGCGGGAACAACGTCTCGATCCAACGATACCGCGGCGCTGGTCG
TAGCGGTGGTGTTCCTGTTCGTGTTCGAATTCATCTTCACCGTCGGATAC
TCGGGTCTGACCTTCCTGTACGCGACGGAGGTCGCACCGCTGCAACTTCG
AGCGGCCATCAGTGCCGTATCAACAGCGGCCGTGTGGACCTTCAATTTCC
TCCTCGCTGAAGTGACCCCGGTGGGCTTTGATACGATCGGATACCAATAT
TACATCATCTTCGCGGTGTTGAACGCAGTGATTGTGCCGATCGTGTACTT
CTTCTTCCCGGAGACGAATGGTCGGTCGCTGGAGGAGATCGACGAAATCT
TCCTGCAGTCGAAGAGCGTGTTTGACCCTCCGCGACTGGCGAGGACATTG
CCGCGGATGCATCTGGCAGAGGTGGTGGATGATCCGGAGGAGGTGGCCGA
TGCGAAGGTGGGCAAGAGTTGAGGGTTATGATTGATGATTATGATATGCT
TGAATTGCGGATTACATAGCTTTTTGATGTTAGTCGAATCGGAC
back to top

Coding sequence (CDS) from alignment at ch3:4281076..4283619+

>KJC3_004230-T2 ID=KJC3_004230-T2|Name=KJC3_004230-T2|organism=Aspergillus niger KJC3|type=CDS|length=1203bp|location=Sequence derived from alignment at ch3:4281076..4283619+ (Aspergillus niger KJC3)
ATGGCCACTTCCTTCGGACTGGCTCAATTCATCGTGGCACGTGTTGTGCT
GGGGCTGGGAACGGGCGGCTATGTTGCAACTGTGCCCGTGTGGCAGGCCG
AGATCTCGCAGGCGGGCAAGCGTGGTGCCCATGTAGTGACGGACGGTATC
TTCATTGGGGCGGGAATCACAATCTCGCTGTGGATTGATTTCGGGTTTTA
TTTCGTTACGGGTAACTCCGTGTCGTGGCGGTTCCCGCTAGCCTTCCAGA
TCGTCCTGTCACTCATGGTGATGGCCTTCATCATATTTTTCCCAGAGTCG
CCCCGGTGGCTGATAAAGCGGAACCGGACCGAGGAGGCCCGCGAGATCCT
GGCTGCGCTGGCCGACCTCGATCCGGACGACGAAAGCATCACACTGGCTG
TGCGCGACATTGAGCGGTCGCTGGCCCTCTCGGGAACGGGGTCGTGGAAG
GACATGCTGAGCATGGGCGAACAGCGACTCTTCCATCGGACGGTGTTGGC
TGCAGCAGGTCAGATGTTCCAGCAAATGTGCGGAATCAATCTCATCACCT
TTTACGCCACAACCATTTTCCAACAGTACTTGGGCCTGGATGCCATACCA
TCACGCATTCTGGCTGCCGCCATGTGCCTCACCCAGCCACTGGGTGGATT
CCTCGCTTTCTTCACGATTGACCGGCTCGGTCGGCGAGTCCTGATGCTGT
GGAGTGCTGTGGGCATGTCCGCCTCGATGGCCATCCTGGCGGGAACAACG
TCTCGATCCAACGATACCGCGGCGCTGGTCGTAGCGGTGGTGTTCCTGTT
CGTGTTCGAATTCATCTTCACCGTCGGATACTCGGGTCTGACCTTCCTGT
ACGCGACGGAGGTCGCACCGCTGCAACTTCGAGCGGCCATCAGTGCCGTA
TCAACAGCGGCCGTGTGGACCTTCAATTTCCTCCTCGCTGAAGTGACCCC
GGTGGGCTTTGATACGATCGGATACCAATATTACATCATCTTCGCGGTGT
TGAACGCAGTGATTGTGCCGATCGTGTACTTCTTCTTCCCGGAGACGAAT
GGTCGGTCGCTGGAGGAGATCGACGAAATCTTCCTGCAGTCGAAGAGCGT
GTTTGACCCTCCGCGACTGGCGAGGACATTGCCGCGGATGCATCTGGCAG
AGGTGGTGGATGATCCGGAGGAGGTGGCCGATGCGAAGGTGGGCAAGAGT
TGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004230KJC3_004230Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004230-T2KJC3_004230-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004230-T2.utr5p1KJC3_004230-T2.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_004230-T2.utr5p2KJC3_004230-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_004230-T2.utr5p3KJC3_004230-T2.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004230-T2.exon1KJC3_004230-T2.exon1Aspergillus niger KJC3exon
KJC3_004230-T2.exon2KJC3_004230-T2.exon2Aspergillus niger KJC3exon
KJC3_004230-T2.exon3KJC3_004230-T2.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004230-T2.cdsKJC3_004230-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004230-T2.utr3p1KJC3_004230-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR005829
DBxrefInterPro:IPR005828
DBxrefInterPro:IPR003663
DBxrefPFAM:PF00083
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4281076..4283619 +
Powered by Drupal