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KJC3_004251-T1, KJC3_004251-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004251-T1
Unique NameKJC3_004251-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4334996..4336284-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004251-T1 ID=KJC3_004251-T1|Name=KJC3_004251-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1289bp|location=Sequence derived from alignment at ch3:4334996..4336284- (Aspergillus niger KJC3)
CGATAGACTGCCCAGCTCTTTTACAGCACGCGACCAACTGAATCTCACCT
GGACGTGGAGACGGTCATTTTCTATTCCTACCATTACCCGTTTCCTTTGA
CACGTCCGTTCCCATCGGCATCCATATTTTGCAAACTCCTGCTGAGCAGC
TGGCATTGATTTCAGACCACCAACCATGAGTGTTCGTACTCTTCTATCCC
TACTCCATTGACTCAAGCTTTATCTCAGGTGTACACTTGTATTACTAAAG
GAGTAAACTGACTCTGCGAATCTAGTTCAACCCTGTCAACCCCCGGCCTT
TCCTCCAGGCTAGGTACGCACCCGGTCCCTTGTCGCTTGATCGCCCCGCC
GCAATCCCATCCTATAACTTCCAATTTCTATTGAAAAATATCCTCTAATT
CAAATCGCAGAGTCGGTACCGAGCTCATCATCCGTCTGAAGTGGGGCCAA
ACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATGAACGTGCT
GCTCCGTGATACGGAAGAGTTCATTGACGGAAAGAACACGGGAACATTGG
GTCTGGTCCTGATTAGGTGCGTTTATTCGGTCGCCTGCTATCTCGGGGGC
TGGGGTTTCCTGATCCCAGTGCTGGGATCTGCGCATCCGTTACCCCTCTC
CGGAGATACATTTGGACGCATATTGGAAGGATATTTGCTAACGCAATGCG
CTGATAGGTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAA
ATGACGGACCTGGGACTACGATAGACGGAATCGGGCGATATACCAGGCAA
ATGAAGACACATATACCAATAACTCTTCCCGATAAGATACGCGCACATTG
GAAAGGTGCTCAGACAGAGGCATATTGACGGATTTTCATGTACGGGTTTT
TAGCAAGCTCCGTCCTCTACTTTTCTTTATTTCTGGACCAGGCGTTTTTA
CATGATGGCTTTCGAGGATTGATTCGGGGAAATGCAGTCTGAATTGTGCG
GAGCTTGCTGGAAAATCTAACGGTCAAGGACATAAGAGAATAAGGTCTCT
GATTCTGGTCTCCTATTATCTGGCACTGAATCACAGATATGTGGTGTCAT
CCACAGCCTGTGACATTCAATGTGCCGTTGAAACTTCCTGTCAAGTACTT
AGCCACCTAGACGAATGTGATAATTACAAAAGGCCAACGAGTCGGAAGTA
TCTCCGTGTAGTGCATTGCATGTACTACGTGGCCTGAGGCCAGTGTTGTT
GTTTGCCTTGGGACTGCCGCCAGAGAGCCTCTGCTTTAC
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Coding sequence (CDS) from alignment at ch3:4334996..4336284-

>KJC3_004251-T1 ID=KJC3_004251-T1|Name=KJC3_004251-T1|organism=Aspergillus niger KJC3|type=CDS|length=1068bp|location=Sequence derived from alignment at ch3:4334996..4336284- (Aspergillus niger KJC3)
GTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAAATGACGG
ACCTGGGACTACGATAGAGTCGGTACCGAGCTCATCATCCGTCTGAAGTG
GGGCCAAACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATGA
ACGTGCTGCTCCGTGATACGGAAGAGTTCATTGACGGAAAGAACACGGGA
ACATTGGGTCTGGTCCTGATTAGTTCAACCCTGTCAACCCCCGGCCTTTC
CTCCAGGCTAGATGAGTGTGTAACAACATCCTCTGGATGGGCTCTGCGGA
CAGCGTGGAAATGACGGACCTGGGACTACGATAGAGTCGGTACCGAGCTC
ATCATCCGTCTGAAGTGGGGCCAAACGGAATACAAGGGCAAGCTTGAGAG
CATCGATTCGTACATGAACGTGCTGCTCCGTGATACGGAAGAGTTCATTG
ACGGAAAGAACACGGGAACATTGGGTCTGGTCCTGATTAGTTCAACCCTG
TCAACCCCCGGCCTTTCCTCCAGGCTAGATGAGTGTGTAACAACATCCTC
TGGATGGGCTCTGCGGACAGCGTGGAAATGACGGACCTGGGACTACGATA
GAGTCGGTACCGAGCTCATCATCCGTCTGAAGTGGGGCCAAACGGAATAC
AAGGGCAAGCTTGAGAGCATCGATTCGTACATGAACGTGCTGCTCCGTGA
TACGGAAGAGTTCATTGACGGAAAGAACACGGGAACATTGGGTCTGGTCC
TGATTAGTTCAACCCTGTCAACCCCCGGCCTTTCCTCCAGGCTAGATGAG
TGTGTAACAACATCCTCTGGATGGGCTCTGCGGACAGCGTGGAAATGACG
GACCTGGGACTACGATAGAGTCGGTACCGAGCTCATCATCCGTCTGAAGT
GGGGCCAAACGGAATACAAGGGCAAGCTTGAGAGCATCGATTCGTACATG
AACGTGCTGCTCCGTGATACGGAAGAGTTCATTGACGGAAAGAACACGGG
AACATTGGGTCTGGTCCTGATTAGTTCAACCCTGTCAACCCCCGGCCTTT
CCTCCAGGCTAGATGAGT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004251KJC3_004251Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004251-T1KJC3_004251-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004251-T1.cdsKJC3_004251-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004251-T1.utr3p1KJC3_004251-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004251-T1.exon4KJC3_004251-T1.exon4Aspergillus niger KJC3exon
KJC3_004251-T1.exon3KJC3_004251-T1.exon3Aspergillus niger KJC3exon
KJC3_004251-T1.exon2KJC3_004251-T1.exon2Aspergillus niger KJC3exon
KJC3_004251-T1.exon1KJC3_004251-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004251-T1.utr5p1KJC3_004251-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034100
DBxrefInterPro:IPR016487
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4334996..4336284 -
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