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KJC3_004272-T1, KJC3_004272-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004272-T1
Unique NameKJC3_004272-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4395437..4396272-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004272-T1 ID=KJC3_004272-T1|Name=KJC3_004272-T1|organism=Aspergillus niger KJC3|type=mRNA|length=836bp|location=Sequence derived from alignment at ch3:4395437..4396272- (Aspergillus niger KJC3)
CCTCACTACCAACTTCACAATGAGCGCCCAGGCATACTACGAGCTCTATC
GCGGGAGCAGGTACGATAGGGTCTGCGACGACATGTCAGGAAATACCACT
AACCCTCCGCAACAGCCTCGGACTCTCCCTGACCGATACCCTCGATGACC
TGATCAACGAAGGACGGATCGAGCCCCAGCTCGCCATGAAGATCCTCTCA
ACTTTCGATCGCGTGATCACAGAGGTGCTGGCAGACAAAGTGCGCGCTCG
TCTGACTTTCAAGGTACGCTTGCATATGAGGATAAGGAAGGCTGCGCTTG
GAGCAGATGAAGGAGGCGAACTGAGGCTGACATGGCTTTTCTTACCACCA
CAGGGACATCTTGATACCTACCGATTCTGCGACGAAGTGTGGACATTCCT
TATCAAGGACGTTACTTTCAAGCTGGATAACCAGACTACGGTCTCCGCGG
ATAAAGTGAAGATTGTGAGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAA
GGGTGAGGGATCGTTTACCTTGCGTCATCGGTTGATACTCTCGTTACCTC
ACTTCCTCACACTCTTTTTTTCTCCTTCCGCCACTTGCTTTGATAGGCGT
TGTTGAACCTATATTTCTTCTGTTTTACTCTTCATGTGGATTGCTCTTTT
GTGCCCGGGACATGGCAAGTTGCTTGATATGGGGCTTTATCATATTTTTG
GCGTTTCGCGTTAGCATATGAGGCTGAATTATGGATTTGCTATGGTGCTA
CTAGAATAGATTGAAATCAGATACCCGAATCTACACCATCGAAGAAGAGA
GTAGTAGATAGAAATCCGTATAGCTTACTTGCAGAG
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Coding sequence (CDS) from alignment at ch3:4395437..4396272-

>KJC3_004272-T1 ID=KJC3_004272-T1|Name=KJC3_004272-T1|organism=Aspergillus niger KJC3|type=CDS|length=1008bp|location=Sequence derived from alignment at ch3:4395437..4396272- (Aspergillus niger KJC3)
GGACATCTTGATACCTACCGATTCTGCGACGAAGTGTGGACATTCCTTAT
CAAGGACGTTACTTTCAAGCTGGATAACCAGACTACGGTCTCCGCGGATA
AAGTGAAGATTGTGAGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAACCT
CGGACTCTCCCTGACCGATACCCTCGATGACCTGATCAACGAAGGACGGA
TCGAGCCCCAGCTCGCCATGAAGATCCTCTCAACTTTCGATCGCGTGATC
ACAGAGGTGCTGGCAGACAAAGTGCGCGCTCGTCTGACTTTCAAGATGAG
CGCCCAGGCATACTACGAGCTCTATCGCGGGAGCAGGGACATCTTGATAC
CTACCGATTCTGCGACGAAGTGTGGACATTCCTTATCAAGGACGTTACTT
TCAAGCTGGATAACCAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTG
AGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAACCTCGGACTCTCCCTGA
CCGATACCCTCGATGACCTGATCAACGAAGGACGGATCGAGCCCCAGCTC
GCCATGAAGATCCTCTCAACTTTCGATCGCGTGATCACAGAGGTGCTGGC
AGACAAAGTGCGCGCTCGTCTGACTTTCAAGATGAGCGCCCAGGCATACT
ACGAGCTCTATCGCGGGAGCAGGGACATCTTGATACCTACCGATTCTGCG
ACGAAGTGTGGACATTCCTTATCAAGGACGTTACTTTCAAGCTGGATAAC
CAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTGAGCTGCAATAGCAA
GAGGCCTGGTGAAGCCTAACCTCGGACTCTCCCTGACCGATACCCTCGAT
GACCTGATCAACGAAGGACGGATCGAGCCCCAGCTCGCCATGAAGATCCT
CTCAACTTTCGATCGCGTGATCACAGAGGTGCTGGCAGACAAAGTGCGCG
CTCGTCTGACTTTCAAGATGAGCGCCCAGGCATACTACGAGCTCTATCGC
GGGAGCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TOA2KJC3_004272Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004272-T1KJC3_004272-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004272-T1.cdsKJC3_004272-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004272-T1.utr3p1KJC3_004272-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004272-T1.exon3KJC3_004272-T1.exon3Aspergillus niger KJC3exon
KJC3_004272-T1.exon2KJC3_004272-T1.exon2Aspergillus niger KJC3exon
KJC3_004272-T1.exon1KJC3_004272-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004272-T1.utr5p1KJC3_004272-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265ER6
DBxrefInterPro:IPR015872
DBxrefInterPro:IPR009083
DBxrefInterPro:IPR015871
DBxrefInterPro:IPR003194
DBxrefInterPro:IPR009088
DBxrefPFAM:PF02268
DBxrefPFAM:PF02751
ProductTranscription initiation factor IIA small chain (TFIIA 13.5 kDa subunit)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4395437..4396272 -
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