|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4406289..4408379+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004277-T1 ID=KJC3_004277-T1|Name=KJC3_004277-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2091bp|location=Sequence derived from alignment at ch3:4406289..4408379+ (Aspergillus niger KJC3)
GTAGAACAATTCCATCGCTTTTAAGTCAAAGCAGTCAATCCCGACCAGCA
TTTCCGGTAGTGGTCGGGTCGTTAGGCTTTCAGGAGGCATGATTTTCTAA
ACCACCCTAACCCCTCGCAATCCACCAAAGATGGCCTCCTTGCGCCCCGG
GCCGACCGAGGCCATCTCCGTCTCCAGTGGATCATCGTCTACCCCTCAGT
ATACGCCTGTCTCTGATCGCTCCGAGAATGATGGTTCTCCCAATCCAAAT
CGACCAACGGCTGGGTCCCTGAGAGTTCAGACAGCCTTCAGCTCAGACGG
GGAGTCGTTTACTGACGACGGGTTCGATGAAGGATATGAATCCTACGAAG
ATGTGCAGCCCCTTTCGAGTAGTAGAACTAGCATGCCAAAGTACACAAAA
GAGGAAGAGAAGGGGGTCATCAAGCAATTCGATCGCAAATTGGTCCCTTT
TCTAGCTCTCCTCTATCTGCTTTCGTTTCTAGATCGCTCAAGTACGTGGT
TTGTCCACTATCGCAGCCAAGACCTTCTATAAAACCACACGTTACCCATC
ATAAGATTGATATCAGCTAACACTAAGCCAGACATTGGAAATGCCAAAAT
CGCCGGTCTCGCAGACGACCTGCATCTCTCGTCATCGCAATATGAATGGC
TCCTCACGGCCTTCTACATCACCTACATCCTCTTCGAATGGATGACGCTC
ATGTACAAAGTCGTCCCACCGCACATCTACATCGCTCTCTGCGTCTGCGG
CTGGGGCCTCGTCGCATCTTTACAATCGCTCGCTACTTCATTCGGAGCCC
TCGTCTTCCTTCGAGCAGCTCTCGGCATCACCGAAGCAGCATTCGGCCCT
GGCGTGCCCTTCTATCTTTCACTCTTCTACAAGCGCGAAGAGCTCGCCTT
CCGAAACGGCCTCTTCATCTCCGCTGCTCCCCTCGCCTCATCCTTCGCCA
GCAGCCTAGCCTGGCTCATTGTCCGCGTGAGCGACAACGGCCCAATCGCT
CCCTGGCGTACCCTCTTCCTAGTCGAAGGGTTCCCCAGCATCATCGTCGC
CGTCTTCGCCTGGGTAGTCATCCCCGATACACCAGGCAGCGCCTCATTCC
TGAACCCCCGGCAGCGGGCAATCGCACAGCTCCGCATGGACGAGCTCAAA
CCAAACCACAGACCACATCAGCAGCAATCGCAGCAACGCAAATCCTTCAA
CTGGAAAGAAGTCAAGAAGACCCTCGCCGATCCCAAATCCTACATCACAG
CCGTGAGCTACCCTCCATCTCTTCCCCCCTCTCCTCTGCCCCAACTAATA
TCCAACAACACAGTTCATGTTCTTCAGCTGCAACGTCGCCTTCAGCTCCA
TGCCTGTCTTCCTTCCCACTATAATCCAAGAGTGAATACTTACCCCTTCC
CCCAAATACTCCCCCAAAAAACTAACAAAACCAAAACAGCATGGGCTACA
GCTCCCTAACATCCCAAGCCCTCTCCGCCCCACCGTACCTCCTCTCCTTC
CTAACCGTCCTCTTAACATCCCACCTCTCGGACCGCACACGCACGCGCAG
CCCCTACCTCATCTTCCACGCGCTCTTGTCCGCAACCGCCTACGCCGCAA
TCGCCCTGGCGGGGCATTTCCACTCCTCCCTCCCATCTCCCATACACGTC
GCAATTCGCTACCTGGCCGTCTACCCCGCCACATCGGGGTTCTTCTCCGC
CATCACGCTAATCATCACCTGGACCATGGACAACCGGCCCGCGAACGAGG
GGAAGGGCGCCAGCGTGGCCCTGCTGAATGTCATTGGGCAGTGCGGGCCG
CTGCTCGGCACGAGGCTGTATCCGGCGAGTCAGGGGCCGTGGTATGTCTC
CGGGATGGCGGTCTGCGCGGGGTTTATGGTACTTGTGGCGGCGTTGGCGG
GGTTGTTGAGATGGTTGCTGGGGAGGGAGATGAGGGGAAGGGAGATGGGG
AAGGGGGATGATGGGGATGAGGATGGGATTGAGTTGGAGGAGGGGGGTGG
GGAGGAGAGGGAGGTGCTTATGGGGTATATTGGTGAGAGGGGTGGTGGTG
GTGATAGTGGGGGGAGGGAGAAGTTTACGTGTATTTTGTAG back to topCoding sequence (CDS) from alignment at ch3:4406289..4408379+ >KJC3_004277-T1 ID=KJC3_004277-T1|Name=KJC3_004277-T1|organism=Aspergillus niger KJC3|type=CDS|length=7008bp|location=Sequence derived from alignment at ch3:4406289..4408379+ (Aspergillus niger KJC3)
ATGGCCTCCTTGCGCCCCGGGCCGACCGAGGCCATCTCCGTCTCCAGTGG
ATCATCGTCTACCCCTCAGTATACGCCTGTCTCTGATCGCTCCGAGAATG
ATGGTTCTCCCAATCCAAATCGACCAACGGCTGGGTCCCTGAGAGTTCAG
ACAGCCTTCAGCTCAGACGGGGAGTCGTTTACTGACGACGGGTTCGATGA
AGGATATGAATCCTACGAAGATGTGCAGCCCCTTTCGAGTAGTAGAACTA
GCATGCCAAAGTACACAAAAGAGGAAGAGAAGGGGGTCATCAAGCAATTC
GATCGCAAATTGGTCCCTTTTCTAGCTCTCCTCTATCTGCTTTCGTTTCT
AGATCGCTCAAACATTGGAAATGCCAAAATCGCCGGTCTCGCAGACGACC
TGCATCTCTCGTCATCGCAATATGAATGGCTCCTCACGGCCTTCTACATC
ACCTACATCCTCTTCGAATGGATGACGCTCATGTACAAAGTCGTCCCACC
GCACATCTACATCGCTCTCTGCGTCTGCGGCTGGGGCCTCGTCGCATCTT
TACAATCGCTCGCTACTTCATTCGGAGCCCTCGTCTTCCTTCGAGCAGCT
CTCGGCATCACCGAAGCAGCATTCGGCCCTGGCGTGCCCTTCTATCTTTC
ACTCTTCTACAAGCGCGAAGAGCTCGCCTTCCGAAACGGCCTCTTCATCT
CCGCTGCTCCCCTCGCCTCATCCTTCGCCAGCAGCCTAGCCTGGCTCATT
GTCCGCGTGAGCGACAACGGCCCAATCGCTCCCTGGCGTACCCTCTTCCT
AGTCGAAGGGTTCCCCAGCATCATCGTCGCCGTCTTCGCCTGGGTAGTCA
TCCCCGATACACCAGGCAGCGCCTCATTCCTGAACCCCCGGCAGCGGGCA
ATCGCACAGCTCCGCATGGACGAGCTCAAACCAAACCACAGACCACATCA
GCAGCAATCGCAGCAACGCAAATCCTTCAACTGGAAAGAAGTCAAGAAGA
CCCTCGCCGATCCCAAATCCTACATCACAGCCTTCATGTTCTTCAGCTGC
AACGTCGCCTTCAGCTCCATGCCTGTCTTCCTTCCCACTATAATCCAAGA
CATGGGCTACAGCTCCCTAACATCCCAAGCCCTCTCCGCCCCACCGTACC
TCCTCTCCTTCCTAACCGTCCTCTTAACATCCCACCTCTCGGACCGCACA
CGCACGCGCAGCCCCTACCTCATCTTCCACGCGCTCTTGTCCGCAACCGC
CTACGCCGCAATCGCCCTGGCGGGGCATTTCCACTCCTCCCTCCCATCTC
CCATACACGTCGCAATTCGCTACCTGGCCGTCTACCCCGCCACATCGGGG
TTCTTCTCCGCCATCACGCTAATCATCACCTGGACCATGGACAACCGGCC
CGCGAACGAGGGGAAGGGCGCCAGCGTGGCCCTGCTGAATGTCATTGGGC
AGTGCGGGCCGCTGCTCGGCACGAGGCTGTATCCGGCGAGTCAGGGGCCG
TGGTATGTCTCCGGGATGGCGGTCTGCGCGGGGTTTATGGTACTTGTGGC
GGCGTTGGCGGGGTTGTTGAGATGGTTGCTGGGGAGGGAGATGAGGGGAA
GGGAGATGGGGAAGGGGGATGATGGGGATGAGGATGGGATTGAGTTGGAG
GAGGGGGGTGGGGAGGAGAGGGAGGTGCTTATGGGGTATATTGGTGAGAG
GGGTGGTGGTGGTGATAGTGGGGGGAGGGAGAAGTTTACGTGTATTTTGT
AGATGGCCTCCTTGCGCCCCGGGCCGACCGAGGCCATCTCCGTCTCCAGT
GGATCATCGTCTACCCCTCAGTATACGCCTGTCTCTGATCGCTCCGAGAA
TGATGGTTCTCCCAATCCAAATCGACCAACGGCTGGGTCCCTGAGAGTTC
AGACAGCCTTCAGCTCAGACGGGGAGTCGTTTACTGACGACGGGTTCGAT
GAAGGATATGAATCCTACGAAGATGTGCAGCCCCTTTCGAGTAGTAGAAC
TAGCATGCCAAAGTACACAAAAGAGGAAGAGAAGGGGGTCATCAAGCAAT
TCGATCGCAAATTGGTCCCTTTTCTAGCTCTCCTCTATCTGCTTTCGTTT
CTAGATCGCTCAAACATTGGAAATGCCAAAATCGCCGGTCTCGCAGACGA
CCTGCATCTCTCGTCATCGCAATATGAATGGCTCCTCACGGCCTTCTACA
TCACCTACATCCTCTTCGAATGGATGACGCTCATGTACAAAGTCGTCCCA
CCGCACATCTACATCGCTCTCTGCGTCTGCGGCTGGGGCCTCGTCGCATC
TTTACAATCGCTCGCTACTTCATTCGGAGCCCTCGTCTTCCTTCGAGCAG
CTCTCGGCATCACCGAAGCAGCATTCGGCCCTGGCGTGCCCTTCTATCTT
TCACTCTTCTACAAGCGCGAAGAGCTCGCCTTCCGAAACGGCCTCTTCAT
CTCCGCTGCTCCCCTCGCCTCATCCTTCGCCAGCAGCCTAGCCTGGCTCA
TTGTCCGCGTGAGCGACAACGGCCCAATCGCTCCCTGGCGTACCCTCTTC
CTAGTCGAAGGGTTCCCCAGCATCATCGTCGCCGTCTTCGCCTGGGTAGT
CATCCCCGATACACCAGGCAGCGCCTCATTCCTGAACCCCCGGCAGCGGG
CAATCGCACAGCTCCGCATGGACGAGCTCAAACCAAACCACAGACCACAT
CAGCAGCAATCGCAGCAACGCAAATCCTTCAACTGGAAAGAAGTCAAGAA
GACCCTCGCCGATCCCAAATCCTACATCACAGCCTTCATGTTCTTCAGCT
GCAACGTCGCCTTCAGCTCCATGCCTGTCTTCCTTCCCACTATAATCCAA
GACATGGGCTACAGCTCCCTAACATCCCAAGCCCTCTCCGCCCCACCGTA
CCTCCTCTCCTTCCTAACCGTCCTCTTAACATCCCACCTCTCGGACCGCA
CACGCACGCGCAGCCCCTACCTCATCTTCCACGCGCTCTTGTCCGCAACC
GCCTACGCCGCAATCGCCCTGGCGGGGCATTTCCACTCCTCCCTCCCATC
TCCCATACACGTCGCAATTCGCTACCTGGCCGTCTACCCCGCCACATCGG
GGTTCTTCTCCGCCATCACGCTAATCATCACCTGGACCATGGACAACCGG
CCCGCGAACGAGGGGAAGGGCGCCAGCGTGGCCCTGCTGAATGTCATTGG
GCAGTGCGGGCCGCTGCTCGGCACGAGGCTGTATCCGGCGAGTCAGGGGC
CGTGGTATGTCTCCGGGATGGCGGTCTGCGCGGGGTTTATGGTACTTGTG
GCGGCGTTGGCGGGGTTGTTGAGATGGTTGCTGGGGAGGGAGATGAGGGG
AAGGGAGATGGGGAAGGGGGATGATGGGGATGAGGATGGGATTGAGTTGG
AGGAGGGGGGTGGGGAGGAGAGGGAGGTGCTTATGGGGTATATTGGTGAG
AGGGGTGGTGGTGGTGATAGTGGGGGGAGGGAGAAGTTTACGTGTATTTT
GTAGATGGCCTCCTTGCGCCCCGGGCCGACCGAGGCCATCTCCGTCTCCA
GTGGATCATCGTCTACCCCTCAGTATACGCCTGTCTCTGATCGCTCCGAG
AATGATGGTTCTCCCAATCCAAATCGACCAACGGCTGGGTCCCTGAGAGT
TCAGACAGCCTTCAGCTCAGACGGGGAGTCGTTTACTGACGACGGGTTCG
ATGAAGGATATGAATCCTACGAAGATGTGCAGCCCCTTTCGAGTAGTAGA
ACTAGCATGCCAAAGTACACAAAAGAGGAAGAGAAGGGGGTCATCAAGCA
ATTCGATCGCAAATTGGTCCCTTTTCTAGCTCTCCTCTATCTGCTTTCGT
TTCTAGATCGCTCAAACATTGGAAATGCCAAAATCGCCGGTCTCGCAGAC
GACCTGCATCTCTCGTCATCGCAATATGAATGGCTCCTCACGGCCTTCTA
CATCACCTACATCCTCTTCGAATGGATGACGCTCATGTACAAAGTCGTCC
CACCGCACATCTACATCGCTCTCTGCGTCTGCGGCTGGGGCCTCGTCGCA
TCTTTACAATCGCTCGCTACTTCATTCGGAGCCCTCGTCTTCCTTCGAGC
AGCTCTCGGCATCACCGAAGCAGCATTCGGCCCTGGCGTGCCCTTCTATC
TTTCACTCTTCTACAAGCGCGAAGAGCTCGCCTTCCGAAACGGCCTCTTC
ATCTCCGCTGCTCCCCTCGCCTCATCCTTCGCCAGCAGCCTAGCCTGGCT
CATTGTCCGCGTGAGCGACAACGGCCCAATCGCTCCCTGGCGTACCCTCT
TCCTAGTCGAAGGGTTCCCCAGCATCATCGTCGCCGTCTTCGCCTGGGTA
GTCATCCCCGATACACCAGGCAGCGCCTCATTCCTGAACCCCCGGCAGCG
GGCAATCGCACAGCTCCGCATGGACGAGCTCAAACCAAACCACAGACCAC
ATCAGCAGCAATCGCAGCAACGCAAATCCTTCAACTGGAAAGAAGTCAAG
AAGACCCTCGCCGATCCCAAATCCTACATCACAGCCTTCATGTTCTTCAG
CTGCAACGTCGCCTTCAGCTCCATGCCTGTCTTCCTTCCCACTATAATCC
AAGACATGGGCTACAGCTCCCTAACATCCCAAGCCCTCTCCGCCCCACCG
TACCTCCTCTCCTTCCTAACCGTCCTCTTAACATCCCACCTCTCGGACCG
CACACGCACGCGCAGCCCCTACCTCATCTTCCACGCGCTCTTGTCCGCAA
CCGCCTACGCCGCAATCGCCCTGGCGGGGCATTTCCACTCCTCCCTCCCA
TCTCCCATACACGTCGCAATTCGCTACCTGGCCGTCTACCCCGCCACATC
GGGGTTCTTCTCCGCCATCACGCTAATCATCACCTGGACCATGGACAACC
GGCCCGCGAACGAGGGGAAGGGCGCCAGCGTGGCCCTGCTGAATGTCATT
GGGCAGTGCGGGCCGCTGCTCGGCACGAGGCTGTATCCGGCGAGTCAGGG
GCCGTGGTATGTCTCCGGGATGGCGGTCTGCGCGGGGTTTATGGTACTTG
TGGCGGCGTTGGCGGGGTTGTTGAGATGGTTGCTGGGGAGGGAGATGAGG
GGAAGGGAGATGGGGAAGGGGGATGATGGGGATGAGGATGGGATTGAGTT
GGAGGAGGGGGGTGGGGAGGAGAGGGAGGTGCTTATGGGGTATATTGGTG
AGAGGGGTGGTGGTGGTGATAGTGGGGGGAGGGAGAAGTTTACGTGTATT
TTGTAGATGGCCTCCTTGCGCCCCGGGCCGACCGAGGCCATCTCCGTCTC
CAGTGGATCATCGTCTACCCCTCAGTATACGCCTGTCTCTGATCGCTCCG
AGAATGATGGTTCTCCCAATCCAAATCGACCAACGGCTGGGTCCCTGAGA
GTTCAGACAGCCTTCAGCTCAGACGGGGAGTCGTTTACTGACGACGGGTT
CGATGAAGGATATGAATCCTACGAAGATGTGCAGCCCCTTTCGAGTAGTA
GAACTAGCATGCCAAAGTACACAAAAGAGGAAGAGAAGGGGGTCATCAAG
CAATTCGATCGCAAATTGGTCCCTTTTCTAGCTCTCCTCTATCTGCTTTC
GTTTCTAGATCGCTCAAACATTGGAAATGCCAAAATCGCCGGTCTCGCAG
ACGACCTGCATCTCTCGTCATCGCAATATGAATGGCTCCTCACGGCCTTC
TACATCACCTACATCCTCTTCGAATGGATGACGCTCATGTACAAAGTCGT
CCCACCGCACATCTACATCGCTCTCTGCGTCTGCGGCTGGGGCCTCGTCG
CATCTTTACAATCGCTCGCTACTTCATTCGGAGCCCTCGTCTTCCTTCGA
GCAGCTCTCGGCATCACCGAAGCAGCATTCGGCCCTGGCGTGCCCTTCTA
TCTTTCACTCTTCTACAAGCGCGAAGAGCTCGCCTTCCGAAACGGCCTCT
TCATCTCCGCTGCTCCCCTCGCCTCATCCTTCGCCAGCAGCCTAGCCTGG
CTCATTGTCCGCGTGAGCGACAACGGCCCAATCGCTCCCTGGCGTACCCT
CTTCCTAGTCGAAGGGTTCCCCAGCATCATCGTCGCCGTCTTCGCCTGGG
TAGTCATCCCCGATACACCAGGCAGCGCCTCATTCCTGAACCCCCGGCAG
CGGGCAATCGCACAGCTCCGCATGGACGAGCTCAAACCAAACCACAGACC
ACATCAGCAGCAATCGCAGCAACGCAAATCCTTCAACTGGAAAGAAGTCA
AGAAGACCCTCGCCGATCCCAAATCCTACATCACAGCCTTCATGTTCTTC
AGCTGCAACGTCGCCTTCAGCTCCATGCCTGTCTTCCTTCCCACTATAAT
CCAAGACATGGGCTACAGCTCCCTAACATCCCAAGCCCTCTCCGCCCCAC
CGTACCTCCTCTCCTTCCTAACCGTCCTCTTAACATCCCACCTCTCGGAC
CGCACACGCACGCGCAGCCCCTACCTCATCTTCCACGCGCTCTTGTCCGC
AACCGCCTACGCCGCAATCGCCCTGGCGGGGCATTTCCACTCCTCCCTCC
CATCTCCCATACACGTCGCAATTCGCTACCTGGCCGTCTACCCCGCCACA
TCGGGGTTCTTCTCCGCCATCACGCTAATCATCACCTGGACCATGGACAA
CCGGCCCGCGAACGAGGGGAAGGGCGCCAGCGTGGCCCTGCTGAATGTCA
TTGGGCAGTGCGGGCCGCTGCTCGGCACGAGGCTGTATCCGGCGAGTCAG
GGGCCGTGGTATGTCTCCGGGATGGCGGTCTGCGCGGGGTTTATGGTACT
TGTGGCGGCGTTGGCGGGGTTGTTGAGATGGTTGCTGGGGAGGGAGATGA
GGGGAAGGGAGATGGGGAAGGGGGATGATGGGGATGAGGATGGGATTGAG
TTGGAGGAGGGGGGTGGGGAGGAGAGGGAGGTGCTTATGGGGTATATTGG
TGAGAGGGGTGGTGGTGGTGATAGTGGGGGGAGGGAGAAGTTTACGTGTA
TTTTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004277-T1.utr5p1 | KJC3_004277-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4406289..4408379 + |
|
