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KJC3_004284-T1, KJC3_004284-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004284-T1
Unique NameKJC3_004284-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4424250..4425809+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004284-T1 ID=KJC3_004284-T1|Name=KJC3_004284-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1560bp|location=Sequence derived from alignment at ch3:4424250..4425809+ (Aspergillus niger KJC3)
CTTCGGAGTCCCATCTCCGACCTGCACGACATCAAACCTCATCTTCACTC
CGATTGCTAAAAGGGGTGTGTGTTGCCTGGATTCAGGCTGTTGCTCCCCT
CATCGATTCACCCTCCAGCGCTCCTGAACTAGTGGGTCGTATACCATACC
AGCCACACATCCACACCCCCGGATGCCCAAAGCCAACTGGATAATCTGTA
CCCATCCAGCACCTCTTAGGCCCAAAGGGAAAAGCACTATGGTGGCTATT
GCTACCTCTTCTATACTAGATTAACCCCCACACGATACCCCCTTCCCGCT
AGACTCCCAACAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACGTAAGATAACATAGTATATATCCTAAAT
CGGTGAGCATCCGAGCTCACCAGACCAACAGAACTCATCAAATTGGGGAA
ACGGATGTCTACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCA
AGAGGTTCTACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTC
GTCACAACTGCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACA
TATTCGTTTTGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGGTACGGAAC
ACTCGCGTTAATGCACTTCGTGCGCTTCCCGCTGACGTGGCTACAGAGTT
TATTGCCCCAGATGTTTCAAAACTAGGAGAATGCGAATTCTCTTTGATAT
CGGAAATGAACTCTCAGCTTATTGTGCACCACCCATATCGAACTTTATCA
GAACTCCAACCCGAGCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATG
GTCTGTAATCAACGACCACTATCTCACCGACTTGCCGCTCTTATATCCGC
CTCACGTCATCGCTGTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCC
AGCCAAACGAGCTTTCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCG
CGATGGGGGGATGAACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACG
GCCCTCCTCCCCGCATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAG
GTGGACATCAAGGCAGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTA
CGAGGTCTGGGAGCAATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGAC
GGATGGTGAAGAGCAAGAACCTGGACAAATGAACATACCATTTTCATGCA
CATACATAGGATTTCAAGCGGCGTTCAACGGGGTCATGTTATTACGGAAG
CATGTCATGCGCGAGCGATACTTATTTTTTTGGTCCATATTTCGGGTTTC
GGCTGGTTGCAGATTGTTTCAAAACTGTTGCATTATCGCATAGTCTAAGC
GGGTGCCATGGAGAAGATACTGAGAGATACAGATATACCATAAGCGAACA
AACAGACTTC
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Coding sequence (CDS) from alignment at ch3:4424250..4425809+

>KJC3_004284-T1 ID=KJC3_004284-T1|Name=KJC3_004284-T1|organism=Aspergillus niger KJC3|type=CDS|length=2718bp|location=Sequence derived from alignment at ch3:4424250..4425809+ (Aspergillus niger KJC3)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCGACAACA
AGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCAAGAACG
AGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTCTATCTG
GCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGTCGGAGA
GGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAAAACTAG
GAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTG
CACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTAC
GTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCA
CCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATT
ATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGC
AGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAG
CATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTT
ATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTG
TACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAA
AGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGAC
AAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCT
CTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGG
ACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAAC
ATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCG
ACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCA
AGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTC
TATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGT
CGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAA
AACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTT
ATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTC
ACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACT
ATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATG
GCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGG
GTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCC
TTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAA
CGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCAT
AGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACA
GCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAAC
CTGGACAAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTC
TACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCT
ACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACT
GCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTT
TGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATG
TTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCT
CAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGA
GCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACG
ACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCT
GTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTT
TCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGA
ACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGC
ATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGC
AGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGC
AATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGC
AAGAACCTGGACAAATGA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSN8KJC3_004284Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004284-T1KJC3_004284-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004284-T1.utr5p1KJC3_004284-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004284-T1.exon1KJC3_004284-T1.exon1Aspergillus niger KJC3exon
KJC3_004284-T1.exon2KJC3_004284-T1.exon2Aspergillus niger KJC3exon
KJC3_004284-T1.exon3KJC3_004284-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004284-T1.cdsKJC3_004284-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004284-T1.utr3p1KJC3_004284-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09262K8C
DBxrefInterPro:IPR036915
DBxrefInterPro:IPR006671
DBxrefInterPro:IPR013763
DBxrefPFAM:PF00134
ProductRNA polymerase II holoenzyme cyclin-like subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4424250..4425809 +
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