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KJC3_004304-T1, KJC3_004304-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004304-T1
Unique NameKJC3_004304-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4482708..4484425-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004304-T1 ID=KJC3_004304-T1|Name=KJC3_004304-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1718bp|location=Sequence derived from alignment at ch3:4482708..4484425- (Aspergillus niger KJC3)
GGCATGGGTAGCAATGGATCTTATCGCCGCTCTCTCCGACACCGCTGCGA
CCGAAACGAACCCCGCGCCAATCGCCACTGCAGCGTTTGTCATGTGTTGC
TTATCAAGCATCCCGCCCGCGGTCACGCCGCCACTTTTCTCGTAAGACAG
CATTCAGCTTTTATCATACATAACGACATCTTTTGGGTGGTTGAATGTTC
AGCATCTGCCGTGTTCTCGCCAATAGCAAAAGAGACCGTACATAACTGAC
TGAAAATCCAGATGGCACCTTCTCTGGAGGAGCCGACCGCTGCCTACCTT
GAGGCGCGGTCGAAGATGGCCCCGAATCTGGTGGCTCCTGAGCCAGGTAT
GTCCGATATGAAGCCGGGATATCTGCTTAGGATATGATTAGTGTACTAAT
CTCTGAGAAGAACATTGTCCTGGTCCCGAGTCCGAACAAGCAGGCAAAGG
CGATGCCTGTGCAGGGTGTCCCAATCAATCGATCTGCGCATCTGCCCCCA
AAGGTCCTGACCCCGATATCCCCATCATCACCGAACGGCTATCGCAAATA
CGACACAAAATCCTTGTACTCTCTGGCAAAGGCGGTGTCGGAAAATCTAC
TTTCACCTCCCTTCTCTCCCACGCATTCGCCGCAAATCCTGAATCGACTG
TGGGTGTAATGGATACCGATATCTGCGGGCCGTCGATACCGAAAATGATG
GGCGTCGAGGCGGAGACCATCCACGTGAGCAATGCAGGCTGGAGTCCGGT
GTGGGTTACGGATAATTTAGCCACGATGAGCGTGCAATTCATGCTGCCCA
ATCGGGATGATGCGGTGATCTGGAGAGGGCCGAAGAAGAACGGACTCATT
AAACAATTCTTGAAGGATGTGGATTGGGGCGAGATGGATTACTTGGTCAT
TGATACACCCCCGGGGACATCGGACGAGCATCTGTCCGTCAACTCTCTGC
TCAAGGAGTCCGGTGTGGATGGCGCAGTAGTTGTCACTACCCCACAGGAG
GTCTCGTTGCTCGACGTCAGGAAGGAAATAGACTTTTGCCGCAAGGCAGG
CATTCGCATCCTGGGGCTAGTCGAGAACATGTCTGGCTTCGTGTGCCAAT
CGTGCAACACTGAGACCCAGATCTTCCGGGCTACCACCGGGGGCGGAAAG
CGACTCGCCAAGAAGATGGGCATTCCTTTCCTGGGCGCTGTGCCTCTTGA
CCCGCGGGTAGGCATGGCATGTGACTATGGTGAGAGCTTCGTGGATCATT
ATCCCGACAGCCCAGCATCGATTGCGATCAAGCAAGTTGTCCGCTCGGTT
GCTGGGATGATTGGAGAGGATCCCAACGACGTGCTGCCGGAGGATGCGGC
AGAGTGATGTTTATCTCATATATATGATGTTTGATCTGATTTCACGGGCG
TTCAGCATTGGGATAGCAAGCCGAGGTTTCTTTCAATTCGTGGGTGTTCC
GGGCATTTTCGACCAAGAAGTCATTTAGATACCAAATCTTCAAAATCTTT
CTCTGTTTCCCGCTCAACCTTTTTCTAAAGGCTTCTCCTTTTTCCTACTA
TTTTTGTACCCCAAGGCACTCTTCGTAGTCTTCGCTTACACCATTGGGGG
CGAGATACACCTAGCTTGGGGGCTGCGCGGGGGAGAAAGAACCCGTGTTC
ACGGATGGTAGTAGGAGTAGTTCGCGTGTTTACTCCAAATAAATAGCAGT
TAATAACCAACTACCGAC
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Coding sequence (CDS) from alignment at ch3:4482708..4484425-

>KJC3_004304-T1 ID=KJC3_004304-T1|Name=KJC3_004304-T1|organism=Aspergillus niger KJC3|type=CDS|length=2064bp|location=Sequence derived from alignment at ch3:4482708..4484425- (Aspergillus niger KJC3)
AACATTGTCCTGGTCCCGAGTCCGAACAAGCAGGCAAAGGCGATGCCTGT
GCAGGGTGTCCCAATCAATCGATCTGCGCATCTGCCCCCAAAGGTCCTGA
CCCCGATATCCCCATCATCACCGAACGGCTATCGCAAATACGACACAAAA
TCCTTGTACTCTCTGGCAAAGGCGGTGTCGGAAAATCTACTTTCACCTCC
CTTCTCTCCCACGCATTCGCCGCAAATCCTGAATCGACTGTGGGTGTAAT
GGATACCGATATCTGCGGGCCGTCGATACCGAAAATGATGGGCGTCGAGG
CGGAGACCATCCACGTGAGCAATGCAGGCTGGAGTCCGGTGTGGGTTACG
GATAATTTAGCCACGATGAGCGTGCAATTCATGCTGCCCAATCGGGATGA
TGCGGTGATCTGGAGAGGGCCGAAGAAGAACGGACTCATTAAACAATTCT
TGAAGGATGTGGATTGGGGCGAGATGGATTACTTGGTCATTGATACACCC
CCGGGGACATCGGACGAGCATCTGTCCGTCAACTCTCTGCTCAAGGAGTC
CGGTGTGGATGGCGCAGTAGTTGTCACTACCCCACAGGAGGTCTCGTTGC
TCGACGTCAGGAAGGAAATAGACTTTTGCCGCAAGGCAGGCATTCGCATC
CTGGGGCTAGTCGAGAACATGTCTGGCTTCGTGTGCCAATCGTGCAACAC
TGAGACCCAGATCTTCCGGGCTACCACCGGGGGCGGAAAGCGACTCGCCA
AGAAGATGGGCATTCCTTTCCTGGGCGCTGTGCCTCTTGACCCGCGGGTA
GGCATGGCATGTGACTATGGTGAGAGCTTCGTGGATCATTATCCCGACAG
CCCAGCATCGATTGCGATCAAGCAAGTTGTCCGCTCGGTTGCTGGGATGA
TTGGAGAGGATCCCAACGACGTGCTGCCGGAGGATGCGGCAGAGTGAATG
GCACCTTCTCTGGAGGAGCCGACCGCTGCCTACCTTGAGGCGCGGTCGAA
GATGGCCCCGAATCTGGTGGCTCCTGAGCCAGAACATTGTCCTGGTCCCG
AGTCCGAACAAGCAGGCAAAGGCGATGCCTGTGCAGGGTGTCCCAATCAA
TCGATCTGCGCATCTGCCCCCAAAGGTCCTGACCCCGATATCCCCATCAT
CACCGAACGGCTATCGCAAATACGACACAAAATCCTTGTACTCTCTGGCA
AAGGCGGTGTCGGAAAATCTACTTTCACCTCCCTTCTCTCCCACGCATTC
GCCGCAAATCCTGAATCGACTGTGGGTGTAATGGATACCGATATCTGCGG
GCCGTCGATACCGAAAATGATGGGCGTCGAGGCGGAGACCATCCACGTGA
GCAATGCAGGCTGGAGTCCGGTGTGGGTTACGGATAATTTAGCCACGATG
AGCGTGCAATTCATGCTGCCCAATCGGGATGATGCGGTGATCTGGAGAGG
GCCGAAGAAGAACGGACTCATTAAACAATTCTTGAAGGATGTGGATTGGG
GCGAGATGGATTACTTGGTCATTGATACACCCCCGGGGACATCGGACGAG
CATCTGTCCGTCAACTCTCTGCTCAAGGAGTCCGGTGTGGATGGCGCAGT
AGTTGTCACTACCCCACAGGAGGTCTCGTTGCTCGACGTCAGGAAGGAAA
TAGACTTTTGCCGCAAGGCAGGCATTCGCATCCTGGGGCTAGTCGAGAAC
ATGTCTGGCTTCGTGTGCCAATCGTGCAACACTGAGACCCAGATCTTCCG
GGCTACCACCGGGGGCGGAAAGCGACTCGCCAAGAAGATGGGCATTCCTT
TCCTGGGCGCTGTGCCTCTTGACCCGCGGGTAGGCATGGCATGTGACTAT
GGTGAGAGCTTCGTGGATCATTATCCCGACAGCCCAGCATCGATTGCGAT
CAAGCAAGTTGTCCGCTCGGTTGCTGGGATGATTGGAGAGGATCCCAACG
ACGTGCTGCCGGAGGATGCGGCAGAGTGAATGGCACCTTCTCTGGAGGAG
CCGACCGCTGCCTACCTTGAGGCGCGGTCGAAGATGGCCCCGAATCTGGT
GGCTCCTGAGCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
Vocabulary: Molecular Function
TermDefinition
GO:00515394 iron, 4 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NBP35KJC3_004304Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004304-T1KJC3_004304-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004304-T1.cdsKJC3_004304-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004304-T1.utr3p1KJC3_004304-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004304-T1.exon2KJC3_004304-T1.exon2Aspergillus niger KJC3exon
KJC3_004304-T1.exon1KJC3_004304-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004304-T1.utr5p1KJC3_004304-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR028601
DBxrefInterPro:IPR019591
DBxrefInterPro:IPR000808
DBxrefInterPro:IPR033756
DBxrefPFAM:PF10609
DBxrefPFAM:PF01656
Productcytosolic Fe-S cluster assembly factor nbp35
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4482708..4484425 -
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