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KJC3_004341-T1, KJC3_004341-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004341-T1
Unique NameKJC3_004341-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4601994..4603944+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004341-T1 ID=KJC3_004341-T1|Name=KJC3_004341-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1951bp|location=Sequence derived from alignment at ch3:4601994..4603944+ (Aspergillus niger KJC3)
CGGAACCAACTCAGGAACGGATCCCCTTTTCTCGTCCCTGTCCTTCCAAC
TCACTTTCGCTTTCATTTCTGCCATTCTTCTCACATTCGCTCTCCCTCCT
GGCTCCCTCTCCTCGCATTACCGCGTACCTACTGCGACGCGGTCGGATTC
CCCCACCCATCATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCA
CCTCCTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGA
CCCATGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGC
CCTACCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGT
GAATTGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTA
CTACGTACGTTCTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGAC
ATAGTTGTTCTGGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCC
GTCAACGGCACGCCTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGAT
CATCTCGCATACCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGA
TTGGTATCATCCACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCC
GGTGTGCCCGTCCACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGA
GATCATGCGCTCTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACC
GTTTGGACCGACTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAA
GCTGCAGAGAACATGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGA
GTATGTGGCGCGCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCG
ATCAGCCCATCATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGT
GCCACTGGCAAGGAGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCC
GCCTCAAGCTCCGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGG
CGACCCCACCCCCGATCTACACCAACGAAGACGAAGGATACAGTATCGTC
CACTGTCTGCCATTGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCA
GTTCCTCGGACACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAG
TCTTCGGACCCGATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAAC
GAGCTCATTGATAAGCTATGTAATATTGGCAAGACTGAAGTCCCCGACAC
CGTAAGCTATCGGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCA
CGGACAACTCTGTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCC
GTGGAGAGATACCACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATG
CAAGATCTGCGACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAG
GCATCTTCCTCCACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAA
TACACTAGCAAGATGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGG
ACCGCGCGAGATGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTG
TTATCGGACATGCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAAT
ATCCCTGCTCTTGTGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAG
GAAGGCAGATGCCGCTGCGCAGGCGACTGCTTGATGGGATCATATTCTAA
CTAGTTTGGTTACATGGTGCATAATTTGGCGTTGCTTGCAATTGCAATTA
GAGATTTTAGACATGTTGAGATGACGGACGACGAACTACATTATGTCACA
TAGTTGGATTCGTTTACTTGATACCACCATAGACAAGAGTTTCATCTGCC
A
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Coding sequence (CDS) from alignment at ch3:4601994..4603944+

>KJC3_004341-T1 ID=KJC3_004341-T1|Name=KJC3_004341-T1|organism=Aspergillus niger KJC3|type=CDS|length=3114bp|location=Sequence derived from alignment at ch3:4601994..4603944+ (Aspergillus niger KJC3)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACAGGAAAG
CCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAAT
ACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGA
ACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGATGACGATC
TGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGC
TACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGA
ATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCCGGAGTCA
TGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTC
AAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATT
CCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTGAGCCCAA
AGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAG
TTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGC
TTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTACACCAACG
AAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACG
CATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGA
TCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGAAAGAACG
AGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATT
GGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCAC
AGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAGGAGATAA
TGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGC
GAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTC
GGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCGGCGTACT
CTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCT
CTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTT
TGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTGCCTGGCG
CGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGC
CTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGAC
TGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTC
CTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCA
TGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTA
CCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAAT
TGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTAC
AGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGG
CCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACC
GTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGAT
GACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGC
TGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCC
ATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCC
GGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGG
AAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGG
GAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTG
AGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAA
GACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTC
AGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTAC
ACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGG
CCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCT
CGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGA
AAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATG
TAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACC
TTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAG
GAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCG
CAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGC
TCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCG
GCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTAC
CTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACT
GGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTG
CCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGG
TGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGC
AGGCGACTGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004341KJC3_004341Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004341-T1.utr5p1KJC3_004341-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004341-T1.exon1KJC3_004341-T1.exon1Aspergillus niger KJC3exon
KJC3_004341-T1.exon2KJC3_004341-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004341-T1.cdsKJC3_004341-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004341-T1.utr3p1KJC3_004341-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004341-T1KJC3_004341-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR002942
DBxrefInterPro:IPR006224
DBxrefInterPro:IPR006225
DBxrefInterPro:IPR006145
DBxrefPFAM:PF00849
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4601994..4603944 +
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