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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4636408..4638269- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004352-T2 ID=KJC3_004352-T2|Name=KJC3_004352-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1862bp|location=Sequence derived from alignment at ch3:4636408..4638269- (Aspergillus niger KJC3)
AATTCCTATCGGAGTCAAGCGTCAACAGATTCCAACGGCGCGGTCCAATA
GTGAAGAATACAAGATAGAAGATGGATGATTCACCTGGTGACGAGCATCT
TGCGTTTATGCAATGGGCCGAGGCGTCAGGGATCAAGATAAAGGGTGTCA
CGCCGGCACGATTCCCCGGGCGACGTTTGGGGATGAAGGCGACGCGAACA
ATAAAAGTAGGCTGCTGAGACTGTACTCCTTAGACTAGGAATGGGATATT
GTGGTGCATTGCTAATTTGCCCAGAACAATGAGATAATGCTCACCATTCC
CGTGGATCTAATGCTAACTATCGACTCTATCCCATCATCATTTACCTCGC
AATTTCCCTTGGGAACATCCATCCACGGGATCATGGCTGCGTTTCTCACA
CACGGGGACCCATCTCTTCTTAAGAACCTCGAGGCTTGGCGGAGTGTCTG
GCCCTCGTATGACGAGTTCGAAGACAGCATGCCTGTCCTATGGCCCGCGC
ATCTTCGGGTATCGAATTCTAGCTACGGAGGCAACGCTGACTCTTCCTCA
CCAGAGAAGCAAGATCAAGATCAAAATCGAGGAAAAGTCCTTCTCCCACC
CTCTATCTCAGGAGAATGGAACACTTTCCCCAAAGTCCCCGTAGGTGTGG
ACTACGACACACGATACCAGAACCTACTCAGCCAGCAAGAAAAGCGACTA
AAAGATGCCTGGGCAAATGTCGTCAAAGTCTATCCTGAGACAGAGTGGAA
GATGTTCGCCTATTACTGGTGCATTATCAATTCGAGGAGTTTCTATTATG
TGTCGCCTGGGAAAGATGAGCCAGAGGATTGGAATGATGCGATTGGAATG
GTCCCGTTTGCGGACTATTTTAATCATGTTGATGATGCGGTGGGTTTATC
CCTTTGTTTATGTACCATCTGTATAAGGGTGTGTGATATTGATTATATAC
AGGCATGCGAAGTCAATTTTGACGGAAAGAAGTATACTTTCCGAGCAACG
CGGCGATACGGTACTCTCTATCCCTTCCACACTATGAGTGCAGAGGACTA
ACACCATTCAGAGAAAGGCGAAGAAGTCTACATGAGCTATGGCAACCACT
CAAACGACTTCCTTTTAATTGAGTGTCAGTCTATAACCCTTCTATCAATC
CCAACATCCCATTCCCAATTCATTCAACTAACAGACAAAAGATGGTTTCA
CCCTCTCCACCAACCCCTCCGACTGCATCTACCTCGACGACATAATATTT
CAGGATCTCAGCATATCGCAGAAACAAGAATTAGCGAAACAGGAGATCTT
CGGGTGAGCATAACGACCCTCTTATTCATTTTTTCTCAACACCCTAGAAA
ACAACCATGTATCCGGATACGCAATACTAACTTAGCATACCAAAAGAAAC
TACACCCTCTCCCACCCCCTATCTTCCGAAAGTCCCCTGCGCTACGCCGC
ATGCTTAAAATACATGAACACCCGGGACTGGCGCGCATACGTATGCGGAC
GCTCAGAGCGGGGCGTCGACGAGCAGAAGACCGCGAACGTGATACGAGGC
TGGGTGGAGGTGTATCTTAAGGAATGCATTGGGACGATAGAAATTATTGA
GAATATGATTCAAGATCTTGGAGAAGAGATTGGGGATAGTGATAAGAAAA
TAGGATCAAAAGCATGGGAACGAGAGAAGCTGCAGATGTTGTTGGATAGA
TGGGGACAGATTAGACTGTTATGTGAGAGCGTTCTTGAAGACTTGGAATA
GTCTGCATATTACAGCTGCAATGATGGACCAGTTGGAAGGTCATGGCCAG
ACTTTCACATGACATACTCTGCATTGCACTTACATAGACATGGAAGAAAG
ACGTTCTCAAAT back to topCoding sequence (CDS) from alignment at ch3:4636408..4638269- >KJC3_004352-T2 ID=KJC3_004352-T2|Name=KJC3_004352-T2|organism=Aspergillus niger KJC3|type=CDS|length=5955bp|location=Sequence derived from alignment at ch3:4636408..4638269- (Aspergillus niger KJC3)
AAACTACACCCTCTCCCACCCCCTATCTTCCGAAAGTCCCCTGCGCTACG
CCGCATGCTTAAAATACATGAACACCCGGGACTGGCGCGCATACGTATGC
GGACGCTCAGAGCGGGGCGTCGACGAGCAGAAGACCGCGAACGTGATACG
AGGCTGGGTGGAGGTGTATCTTAAGGAATGCATTGGGACGATAGAAATTA
TTGAGAATATGATTCAAGATCTTGGAGAAGAGATTGGGGATAGTGATAAG
AAAATAGGATCAAAAGCATGGGAACGAGAGAAGCTGCAGATGTTGTTGGA
TAGATGGGGACAGATTAGACTGTTATGTGAGAGCGTTCTTGAAGACTTGG
AATAGATGGTTTCACCCTCTCCACCAACCCCTCCGACTGCATCTACCTCG
ACGACATAATATTTCAGGATCTCAGCATATCGCAGAAACAAGAATTAGCG
AAACAGGAGATCTTCGGAGAAAGGCGAAGAAGTCTACATGAGCTATGGCA
ACCACTCAAACGACTTCCTTTTAATTGAGTGCATGCGAAGTCAATTTTGA
CGGAAAGAAGTATACTTTCCGAGCAACGCGGCGATACGATGCTCACCATT
CCCGTGGATCTAATGCTAACTATCGACTCTATCCCATCATCATTTACCTC
GCAATTTCCCTTGGGAACATCCATCCACGGGATCATGGCTGCGTTTCTCA
CACACGGGGACCCATCTCTTCTTAAGAACCTCGAGGCTTGGCGGAGTGTC
TGGCCCTCGTATGACGAGTTCGAAGACAGCATGCCTGTCCTATGGCCCGC
GCATCTTCGGGTATCGAATTCTAGCTACGGAGGCAACGCTGACTCTTCCT
CACCAGAGAAGCAAGATCAAGATCAAAATCGAGGAAAAGTCCTTCTCCCA
CCCTCTATCTCAGGAGAATGGAACACTTTCCCCAAAGTCCCCGTAGGTGT
GGACTACGACACACGATACCAGAACCTACTCAGCCAGCAAGAAAAGCGAC
TAAAAGATGCCTGGGCAAATGTCGTCAAAGTCTATCCTGAGACAGAGTGG
AAGATGTTCGCCTATTACTGGTGCATTATCAATTCGAGGAGTTTCTATTA
TGTGTCGCCTGGGAAAGATGAGCCAGAGGATTGGAATGATGCGATTGGAA
TGGTCCCGTTTGCGGACTATTTTAATCATGTTGATGATGCGAAACTACAC
CCTCTCCCACCCCCTATCTTCCGAAAGTCCCCTGCGCTACGCCGCATGCT
TAAAATACATGAACACCCGGGACTGGCGCGCATACGTATGCGGACGCTCA
GAGCGGGGCGTCGACGAGCAGAAGACCGCGAACGTGATACGAGGCTGGGT
GGAGGTGTATCTTAAGGAATGCATTGGGACGATAGAAATTATTGAGAATA
TGATTCAAGATCTTGGAGAAGAGATTGGGGATAGTGATAAGAAAATAGGA
TCAAAAGCATGGGAACGAGAGAAGCTGCAGATGTTGTTGGATAGATGGGG
ACAGATTAGACTGTTATGTGAGAGCGTTCTTGAAGACTTGGAATAGATGG
TTTCACCCTCTCCACCAACCCCTCCGACTGCATCTACCTCGACGACATAA
TATTTCAGGATCTCAGCATATCGCAGAAACAAGAATTAGCGAAACAGGAG
ATCTTCGGAGAAAGGCGAAGAAGTCTACATGAGCTATGGCAACCACTCAA
ACGACTTCCTTTTAATTGAGTGCATGCGAAGTCAATTTTGACGGAAAGAA
GTATACTTTCCGAGCAACGCGGCGATACGATGCTCACCATTCCCGTGGAT
CTAATGCTAACTATCGACTCTATCCCATCATCATTTACCTCGCAATTTCC
CTTGGGAACATCCATCCACGGGATCATGGCTGCGTTTCTCACACACGGGG
ACCCATCTCTTCTTAAGAACCTCGAGGCTTGGCGGAGTGTCTGGCCCTCG
TATGACGAGTTCGAAGACAGCATGCCTGTCCTATGGCCCGCGCATCTTCG
GGTATCGAATTCTAGCTACGGAGGCAACGCTGACTCTTCCTCACCAGAGA
AGCAAGATCAAGATCAAAATCGAGGAAAAGTCCTTCTCCCACCCTCTATC
TCAGGAGAATGGAACACTTTCCCCAAAGTCCCCGTAGGTGTGGACTACGA
CACACGATACCAGAACCTACTCAGCCAGCAAGAAAAGCGACTAAAAGATG
CCTGGGCAAATGTCGTCAAAGTCTATCCTGAGACAGAGTGGAAGATGTTC
GCCTATTACTGGTGCATTATCAATTCGAGGAGTTTCTATTATGTGTCGCC
TGGGAAAGATGAGCCAGAGGATTGGAATGATGCGATTGGAATGGTCCCGT
TTGCGGACTATTTTAATCATGTTGATGATGCGAAACTACACCCTCTCCCA
CCCCCTATCTTCCGAAAGTCCCCTGCGCTACGCCGCATGCTTAAAATACA
TGAACACCCGGGACTGGCGCGCATACGTATGCGGACGCTCAGAGCGGGGC
GTCGACGAGCAGAAGACCGCGAACGTGATACGAGGCTGGGTGGAGGTGTA
TCTTAAGGAATGCATTGGGACGATAGAAATTATTGAGAATATGATTCAAG
ATCTTGGAGAAGAGATTGGGGATAGTGATAAGAAAATAGGATCAAAAGCA
TGGGAACGAGAGAAGCTGCAGATGTTGTTGGATAGATGGGGACAGATTAG
ACTGTTATGTGAGAGCGTTCTTGAAGACTTGGAATAGATGGTTTCACCCT
CTCCACCAACCCCTCCGACTGCATCTACCTCGACGACATAATATTTCAGG
ATCTCAGCATATCGCAGAAACAAGAATTAGCGAAACAGGAGATCTTCGGA
GAAAGGCGAAGAAGTCTACATGAGCTATGGCAACCACTCAAACGACTTCC
TTTTAATTGAGTGCATGCGAAGTCAATTTTGACGGAAAGAAGTATACTTT
CCGAGCAACGCGGCGATACGATGCTCACCATTCCCGTGGATCTAATGCTA
ACTATCGACTCTATCCCATCATCATTTACCTCGCAATTTCCCTTGGGAAC
ATCCATCCACGGGATCATGGCTGCGTTTCTCACACACGGGGACCCATCTC
TTCTTAAGAACCTCGAGGCTTGGCGGAGTGTCTGGCCCTCGTATGACGAG
TTCGAAGACAGCATGCCTGTCCTATGGCCCGCGCATCTTCGGGTATCGAA
TTCTAGCTACGGAGGCAACGCTGACTCTTCCTCACCAGAGAAGCAAGATC
AAGATCAAAATCGAGGAAAAGTCCTTCTCCCACCCTCTATCTCAGGAGAA
TGGAACACTTTCCCCAAAGTCCCCGTAGGTGTGGACTACGACACACGATA
CCAGAACCTACTCAGCCAGCAAGAAAAGCGACTAAAAGATGCCTGGGCAA
ATGTCGTCAAAGTCTATCCTGAGACAGAGTGGAAGATGTTCGCCTATTAC
TGGTGCATTATCAATTCGAGGAGTTTCTATTATGTGTCGCCTGGGAAAGA
TGAGCCAGAGGATTGGAATGATGCGATTGGAATGGTCCCGTTTGCGGACT
ATTTTAATCATGTTGATGATGCGAAACTACACCCTCTCCCACCCCCTATC
TTCCGAAAGTCCCCTGCGCTACGCCGCATGCTTAAAATACATGAACACCC
GGGACTGGCGCGCATACGTATGCGGACGCTCAGAGCGGGGCGTCGACGAG
CAGAAGACCGCGAACGTGATACGAGGCTGGGTGGAGGTGTATCTTAAGGA
ATGCATTGGGACGATAGAAATTATTGAGAATATGATTCAAGATCTTGGAG
AAGAGATTGGGGATAGTGATAAGAAAATAGGATCAAAAGCATGGGAACGA
GAGAAGCTGCAGATGTTGTTGGATAGATGGGGACAGATTAGACTGTTATG
TGAGAGCGTTCTTGAAGACTTGGAATAGATGGTTTCACCCTCTCCACCAA
CCCCTCCGACTGCATCTACCTCGACGACATAATATTTCAGGATCTCAGCA
TATCGCAGAAACAAGAATTAGCGAAACAGGAGATCTTCGGAGAAAGGCGA
AGAAGTCTACATGAGCTATGGCAACCACTCAAACGACTTCCTTTTAATTG
AGTGCATGCGAAGTCAATTTTGACGGAAAGAAGTATACTTTCCGAGCAAC
GCGGCGATACGATGCTCACCATTCCCGTGGATCTAATGCTAACTATCGAC
TCTATCCCATCATCATTTACCTCGCAATTTCCCTTGGGAACATCCATCCA
CGGGATCATGGCTGCGTTTCTCACACACGGGGACCCATCTCTTCTTAAGA
ACCTCGAGGCTTGGCGGAGTGTCTGGCCCTCGTATGACGAGTTCGAAGAC
AGCATGCCTGTCCTATGGCCCGCGCATCTTCGGGTATCGAATTCTAGCTA
CGGAGGCAACGCTGACTCTTCCTCACCAGAGAAGCAAGATCAAGATCAAA
ATCGAGGAAAAGTCCTTCTCCCACCCTCTATCTCAGGAGAATGGAACACT
TTCCCCAAAGTCCCCGTAGGTGTGGACTACGACACACGATACCAGAACCT
ACTCAGCCAGCAAGAAAAGCGACTAAAAGATGCCTGGGCAAATGTCGTCA
AAGTCTATCCTGAGACAGAGTGGAAGATGTTCGCCTATTACTGGTGCATT
ATCAATTCGAGGAGTTTCTATTATGTGTCGCCTGGGAAAGATGAGCCAGA
GGATTGGAATGATGCGATTGGAATGGTCCCGTTTGCGGACTATTTTAATC
ATGTTGATGATGCGAAACTACACCCTCTCCCACCCCCTATCTTCCGAAAG
TCCCCTGCGCTACGCCGCATGCTTAAAATACATGAACACCCGGGACTGGC
GCGCATACGTATGCGGACGCTCAGAGCGGGGCGTCGACGAGCAGAAGACC
GCGAACGTGATACGAGGCTGGGTGGAGGTGTATCTTAAGGAATGCATTGG
GACGATAGAAATTATTGAGAATATGATTCAAGATCTTGGAGAAGAGATTG
GGGATAGTGATAAGAAAATAGGATCAAAAGCATGGGAACGAGAGAAGCTG
CAGATGTTGTTGGATAGATGGGGACAGATTAGACTGTTATGTGAGAGCGT
TCTTGAAGACTTGGAATAGATGGTTTCACCCTCTCCACCAACCCCTCCGA
CTGCATCTACCTCGACGACATAATATTTCAGGATCTCAGCATATCGCAGA
AACAAGAATTAGCGAAACAGGAGATCTTCGGAGAAAGGCGAAGAAGTCTA
CATGAGCTATGGCAACCACTCAAACGACTTCCTTTTAATTGAGTGCATGC
GAAGTCAATTTTGACGGAAAGAAGTATACTTTCCGAGCAACGCGGCGATA
CGATGCTCACCATTCCCGTGGATCTAATGCTAACTATCGACTCTATCCCA
TCATCATTTACCTCGCAATTTCCCTTGGGAACATCCATCCACGGGATCAT
GGCTGCGTTTCTCACACACGGGGACCCATCTCTTCTTAAGAACCTCGAGG
CTTGGCGGAGTGTCTGGCCCTCGTATGACGAGTTCGAAGACAGCATGCCT
GTCCTATGGCCCGCGCATCTTCGGGTATCGAATTCTAGCTACGGAGGCAA
CGCTGACTCTTCCTCACCAGAGAAGCAAGATCAAGATCAAAATCGAGGAA
AAGTCCTTCTCCCACCCTCTATCTCAGGAGAATGGAACACTTTCCCCAAA
GTCCCCGTAGGTGTGGACTACGACACACGATACCAGAACCTACTCAGCCA
GCAAGAAAAGCGACTAAAAGATGCCTGGGCAAATGTCGTCAAAGTCTATC
CTGAGACAGAGTGGAAGATGTTCGCCTATTACTGGTGCATTATCAATTCG
AGGAGTTTCTATTATGTGTCGCCTGGGAAAGATGAGCCAGAGGATTGGAA
TGATGCGATTGGAATGGTCCCGTTTGCGGACTATTTTAATCATGTTGATG
ATGCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004352-T2.utr3p1 | KJC3_004352-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004352-T2.utr5p1 | KJC3_004352-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001214 |
| DBxref | PFAM:PF00856 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4636408..4638269 - |
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