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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4663860..4666288+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004361-T1 ID=KJC3_004361-T1|Name=KJC3_004361-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2429bp|location=Sequence derived from alignment at ch3:4663860..4666288+ (Aspergillus niger KJC3)
CAATCCCAGAAATACTCTGTGTGGTACTCCAATCTTCTAGTCCTTTTAGT
GTCGGGTATACCCCGTGACAAGGGTATCTGGTCCTATCACCGTGCCTGTC
AAACAATTTTCCAGGTCTGCGCCGGGCGCCCCCACCTGCCATTAGTCTGA
CAGCCGGTGGCGAGGAAGGATTTTCAATTTCCAGACCTTCTTACTGGTGC
AATGGGCCAAGAAGGTACTAGGAAAGCCGTTAAGTAGCACGGTGGCGAAC
CATATGCATGCTACTGAAATAAATTTTGATATACCCGACAACCAGGATGC
CAGACTGCAGTGTCTGCATCTGGACCCGCTCCTTCCCAGAACATAAATCG
GCCGTCAGAGCAATGGAGGTAGGATGCGGTGGCAGGCAGGACCTGAGTTG
TCAAAATTTAAGTGCCCAGAAACCGTTTCAGGGAGCTCTACGGCTCATTG
ACTATATCGTTACATCTATATTCTCCTGATACCTTCCTTGCGTGTTACAT
CATGGGTCAACCTTGGAATACACAGTTCAACCAAGTAGCGAGCTTGTAGG
TGTTTCTACTTTCTACTCTGTTGGTCAGAGAGACACAAGCTAATGACGCA
TCATGTTCGCTGTTCAGAAGGGCCGCTAGACGACCAGGGGTTCAGACAGC
AAATCTCAATATCGCAGGCATCTTCGTTGTCAACAATCAACAGAGCCTTC
CAGTTGAACTGTCGAGGACTGATGAGAGCCATCTACTCAACACGGGCTGG
CCCCATGTCCAGTCGCTCTGGCCCATACTTGAAGTGGGGGAATTCCAGGC
ATATTACGATGCCTTGTGGACGCCGGGACGCAAAACCCGTCAGCCATCAG
CTCTTGTTGACAGTTTACTTGCCATCTGCATGCAGGTCACCAGTACTGCT
GTATCCAATGAAGCATCTGGTGGCATCGATGTCCGGATAGCCGGGCAACA
GCTGTATAATCGCACCCGGCAATTGCTTCTCCAAGAGGAACAGGCTGCCC
CAACGCTAGCCACGGTGCAAACCTTCATCTTCTCGAGCATTTATCTGCTG
TACACAGACCGCATTGAGCCCGCATACACCACGATTGACGGCGCAGTGCG
CTTGGCATATGGACTAGACCTCCATCACGATCCCCCAGAAGGAATGGATG
CGAGACAGCGTGAGGTCCGACGCCGGGTATGGTGGGCTTTGTATACATTA
GAGAGCTGTCTCACCACTAGTTTGGGACTGCCATCCCTCATTGTCCAGGG
TGAGGTATCCTGCGGCTGGCCGACGATCTCCCCAATGGGTAGCTCCAGTT
CGAATCACTTCCAGGTGCACTGGGCCAAGCTGCTCATGTCATTCCAGATT
GTACGCACAGTTTTCGACCACCAACAGACAGAGCTTCTCCAGGAAAACCA
CGAGACCGACATTCGCAACCTACCAGGCCTCTTGGAGTCTCTCGCAGTGT
TTATGATGCGTCCTCTTAAGGCTATCCGGGAAGGCCTTAATGCAGTTCCT
TCTCCGTTACGGATCCCTCGAAAGGACGGTACTCGGGGGTACTCATTTCT
CTTGAAAGGAGCCACTGTTAGCCTAGACCGTACAGCCCCCTTGTGGCTTC
AGCGGCAGCAGTTCGCCCTAGAAATCAGCTACCACAGTCTGAGTCTGGCG
GCCCTGCGGCCTTTTCTCTACCTGCAGGGCGGCGATTCCGCCTCTATGCC
GCGAGCACATGCGCACGCTGTCACCGGTCTGAAGCACGCCGTCACCTTAA
CGGTGATCTGCCACCAGAGTCTGACCGAAAGTGAGAGTCTTGCGAGGTGC
CTCCCGATCTTCCGCTGCCAGTGGGACAGCTGCCTATATCTCCTAGCCTT
CATTTTGGCCAACCCAAAGTGCACCTTTGCTGCAGAAGCGCAAAAGGCGG
TGGATACTGCCTTGGACACATTTACTATCCTCGTGAATATTCTAGGCTTG
CCGCGCCGAGTCTCAGAGATCATGAATGATCTCCGCAGGCGCGCAGAAGA
GATGATCCATGTGCCTACAAGCATACTTTCTCCTTCAAGTCAGCCAGCCT
CGTGTTTTGACTCCGCAGCCGCGTCATCCCCAAGATATATTGCATCTAGC
GGCGTCACATCCAATCACGACCATCTAGGCGCGTTTGATAGGGCCCAAAT
GCCACCGACGGCTGACCCATCAATTGGCTCTGACATGGGCAGTGTTGAAA
TTTTTACAGCAGCGGAATCCGAGCTATCGATGGAATCGGCACTTGACGTG
TCTAGCCTGGCACTGGAAGCACCGAGTTGGACCGACAACAGCATATTGGA
TATTGACATGAGTTGGGTGGCGGACACTGTACTGGTCGAACCGTGGCAAA
ATAGTATGGATCATGTATTCAGATAGAAATGAAATACTTCAGACAGGGTG
AAAAGATGCGTAGAAAGAGTAACCGATTT back to topCoding sequence (CDS) from alignment at ch3:4663860..4666288+ >KJC3_004361-T1 ID=KJC3_004361-T1|Name=KJC3_004361-T1|organism=Aspergillus niger KJC3|type=CDS|length=1497bp|location=Sequence derived from alignment at ch3:4663860..4666288+ (Aspergillus niger KJC3)
ATGCAGGTCACCAGTACTGCTGTATCCAATGAAGCATCTGGTGGCATCGA
TGTCCGGATAGCCGGGCAACAGCTGTATAATCGCACCCGGCAATTGCTTC
TCCAAGAGGAACAGGCTGCCCCAACGCTAGCCACGGTGCAAACCTTCATC
TTCTCGAGCATTTATCTGCTGTACACAGACCGCATTGAGCCCGCATACAC
CACGATTGACGGCGCAGTGCGCTTGGCATATGGACTAGACCTCCATCACG
ATCCCCCAGAAGGAATGGATGCGAGACAGCGTGAGGTCCGACGCCGGGTA
TGGTGGGCTTTGTATACATTAGAGAGCTGTCTCACCACTAGTTTGGGACT
GCCATCCCTCATTGTCCAGGGTGAGGTATCCTGCGGCTGGCCGACGATCT
CCCCAATGGGTAGCTCCAGTTCGAATCACTTCCAGGTGCACTGGGCCAAG
CTGCTCATGTCATTCCAGATTGTACGCACAGTTTTCGACCACCAACAGAC
AGAGCTTCTCCAGGAAAACCACGAGACCGACATTCGCAACCTACCAGGCC
TCTTGGAGTCTCTCGCAGTGTTTATGATGCGTCCTCTTAAGGCTATCCGG
GAAGGCCTTAATGCAGTTCCTTCTCCGTTACGGATCCCTCGAAAGGACGG
TACTCGGGGGTACTCATTTCTCTTGAAAGGAGCCACTGTTAGCCTAGACC
GTACAGCCCCCTTGTGGCTTCAGCGGCAGCAGTTCGCCCTAGAAATCAGC
TACCACAGTCTGAGTCTGGCGGCCCTGCGGCCTTTTCTCTACCTGCAGGG
CGGCGATTCCGCCTCTATGCCGCGAGCACATGCGCACGCTGTCACCGGTC
TGAAGCACGCCGTCACCTTAACGGTGATCTGCCACCAGAGTCTGACCGAA
AGTGAGAGTCTTGCGAGGTGCCTCCCGATCTTCCGCTGCCAGTGGGACAG
CTGCCTATATCTCCTAGCCTTCATTTTGGCCAACCCAAAGTGCACCTTTG
CTGCAGAAGCGCAAAAGGCGGTGGATACTGCCTTGGACACATTTACTATC
CTCGTGAATATTCTAGGCTTGCCGCGCCGAGTCTCAGAGATCATGAATGA
TCTCCGCAGGCGCGCAGAAGAGATGATCCATGTGCCTACAAGCATACTTT
CTCCTTCAAGTCAGCCAGCCTCGTGTTTTGACTCCGCAGCCGCGTCATCC
CCAAGATATATTGCATCTAGCGGCGTCACATCCAATCACGACCATCTAGG
CGCGTTTGATAGGGCCCAAATGCCACCGACGGCTGACCCATCAATTGGCT
CTGACATGGGCAGTGTTGAAATTTTTACAGCAGCGGAATCCGAGCTATCG
ATGGAATCGGCACTTGACGTGTCTAGCCTGGCACTGGAAGCACCGAGTTG
GACCGACAACAGCATATTGGATATTGACATGAGTTGGGTGGCGGACACTG
TACTGGTCGAACCGTGGCAAAATAGTATGGATCATGTATTCAGATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004361-T1.utr5p1 | KJC3_004361-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004361-T1.utr3p1 | KJC3_004361-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4663860..4666288 + |
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