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KJC3_004388-T1, KJC3_004388-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004388-T1
Unique NameKJC3_004388-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4857458..4859445-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004388-T1 ID=KJC3_004388-T1|Name=KJC3_004388-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1988bp|location=Sequence derived from alignment at ch3:4857458..4859445- (Aspergillus niger KJC3)
CGGGAAATGAGTACAAGCCAGAGAGGATCGACTCGAATTGTCATGCTGAA
AGTCAGAGCTCCACCCATACCACACTGAAAATAAACTCGGCTTGTTCTTG
CGGGTTGCCATCGGCTCAGGGTCGCCTCTGATAGGCGCATCTTTTTCTCG
GACCAACCGACACTACGTTAACATGTTGCCCGCGTCTGAGCATGACCAAA
TTACCTTCCCCCCCCCTCCCAAGGGAATCCGGTTCGGGGAGGATATCTTC
TGTCCTCCGCTCTCCTCCCACATCCCCCCAATGAACCTCGATTCCCCCAA
TGTTTGCGCCTGGATCTCACCTATCCTTACAACCTGAATTGCGCCTTTGT
CTGCGATTGCCCCTTTGTGTGGCGCCGTGTGGTCGATCGAGAGAGCACTG
CTGAATCAACCTTATCGAGCTGATACTCAGTGCAGTAATTTAACAGACGG
TCTGCCTCCCTCCAATTATCATCCTTAGATCGCATTACTAGCGTGCGTTG
CAGACCACCCTGGTTGATCAACATCGTTTAAATAGCGGCCGTGGCCACCC
ACCTCCACCGCGCAAAACCAAAGTGGCTTAGGTTTTTTATGTGCATACCA
TCTCGAACTTTCACAAAAGCATCTCAGTTAACCACTTCTCACATCCTCAA
TTCTGCCCCCAGACCTTCTCAATGGCCGACGGGAGAATGTCCGCCGACTT
GAACCTCTACGGCACCCTCTCAGGCCCCTCCACCACCGACGAGACCTGGT
CAGGCTCCCTCCCTTTCTACCTGGACGAGACCATTCCCCCAGACTGTCTT
TCTCTTCCTCTGTTCGAAGATAACGATCAATGGCTTCTCAATTCGTTTTC
GCCGCCCGTGTCTTGGGCCACTGGACCTACTCTCCGAAACATCCCCACCG
CTAGCTCGGAAGCCAGTTTCATCGCTCCTTGCCAGACAGTACACAATACT
ACCAGTGATTACGTGCAAAAATGCTCCCCGATGCAGGCTACCTTTCCACA
ATCTGCACCCGCCCAGACGTCTCCCACTCCTATGCACGAAATCACCTCGC
GGGGTAGCATCATGAGCGTTAGCAGCGGTGGCAGCGCCGATAGCAATCAA
TCCGGCTTTAGTATTCCCAGCTACAGCAGCAGTAATGGGAGCCCGGTATA
TGGTCGTCGAGGGAGCTCCCGTCGGCCTCCATCTCAAGGCTTTAAAGTGA
ACGAGCGCGAACGACGCAAACGCGAGCGTTTCCTCGAGCGTAACCGTGTG
GCTGCCAATAAGTGCCGCAAGAAGAAGAAGGAGCATGCTAACCAGCTGGA
GAGTCGCTTCAAGACGGTCTCGCGGGAGAATAAGCTCTTGGAAAGCCAAG
CGGATCACCTGCGAAGCGTAATCTTGAACCTTAAAAGCGAGCTGCTGCGA
CATTCCCACTGTGGAGATGAGAGGATTAAGTGCCATTTGGCAAAATTGGT
GAAGCAGCTTTCTGATAAAACTGGCACGACAGCTTAGAGTTCGGAGGAGA
AGAAAGAATCATTACCTCCAACAGAGAGCCCCAAGAAGGAGCAGGATATG
GCAATGGATATTGAGGATCTGTGGTGCAGCTTACGGCTGCCGCGGATGGC
TCAGTAACAGAGGCAAAAAGATCCTGGGTAAAGGTCTGATTTCGAGATCG
TTGATGGTTTGTATATAATGACCTGTGATGATATGATCAATGTATATATG
ATGAGGCGCTGTAGATATTTCTGTTTTCTTCCTCTCTCGACGTCCCTACC
TTTTATCCTTTCTAATGATTTTTTCCCCTTCCTTTCCTCTTATGTTACCT
CCTCTAGCTTTTTTCTCTTCCGGACTTGGTTCAGAGTTACAATTGTCAAC
GACAGTGAAAGGTGTTGTGTCTGGGCTAGATTATAGATACGATTGATGAT
GGTAGTAGCTAGCATACTTGGCGATTTTGCTGGGTATAATGTGGCAAGGG
GTGTTTTCTGATGGGGGCCAAATTAACTTCAATCCAAC
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Coding sequence (CDS) from alignment at ch3:4857458..4859445-

>KJC3_004388-T1 ID=KJC3_004388-T1|Name=KJC3_004388-T1|organism=Aspergillus niger KJC3|type=CDS|length=816bp|location=Sequence derived from alignment at ch3:4857458..4859445- (Aspergillus niger KJC3)
ATGGCCGACGGGAGAATGTCCGCCGACTTGAACCTCTACGGCACCCTCTC
AGGCCCCTCCACCACCGACGAGACCTGGTCAGGCTCCCTCCCTTTCTACC
TGGACGAGACCATTCCCCCAGACTGTCTTTCTCTTCCTCTGTTCGAAGAT
AACGATCAATGGCTTCTCAATTCGTTTTCGCCGCCCGTGTCTTGGGCCAC
TGGACCTACTCTCCGAAACATCCCCACCGCTAGCTCGGAAGCCAGTTTCA
TCGCTCCTTGCCAGACAGTACACAATACTACCAGTGATTACGTGCAAAAA
TGCTCCCCGATGCAGGCTACCTTTCCACAATCTGCACCCGCCCAGACGTC
TCCCACTCCTATGCACGAAATCACCTCGCGGGGTAGCATCATGAGCGTTA
GCAGCGGTGGCAGCGCCGATAGCAATCAATCCGGCTTTAGTATTCCCAGC
TACAGCAGCAGTAATGGGAGCCCGGTATATGGTCGTCGAGGGAGCTCCCG
TCGGCCTCCATCTCAAGGCTTTAAAGTGAACGAGCGCGAACGACGCAAAC
GCGAGCGTTTCCTCGAGCGTAACCGTGTGGCTGCCAATAAGTGCCGCAAG
AAGAAGAAGGAGCATGCTAACCAGCTGGAGAGTCGCTTCAAGACGGTCTC
GCGGGAGAATAAGCTCTTGGAAAGCCAAGCGGATCACCTGCGAAGCGTAA
TCTTGAACCTTAAAAGCGAGCTGCTGCGACATTCCCACTGTGGAGATGAG
AGGATTAAGTGCCATTTGGCAAAATTGGTGAAGCAGCTTTCTGATAAAAC
TGGCACGACAGCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004388KJC3_004388Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004388-T1KJC3_004388-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004388-T1.cdsKJC3_004388-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004388-T1.utr3p1KJC3_004388-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004388-T1.exon2KJC3_004388-T1.exon2Aspergillus niger KJC3exon
KJC3_004388-T1.exon1KJC3_004388-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004388-T1.utr5p2KJC3_004388-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_004388-T1.utr5p1KJC3_004388-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR004827
DBxrefInterPro:IPR002112
DBxrefPFAM:PF07716
DBxrefPFAM:PF00170
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4857458..4859445 -
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