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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5213826..5215321+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004417-T1 ID=KJC3_004417-T1|Name=KJC3_004417-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1496bp|location=Sequence derived from alignment at ch3:5213826..5215321+ (Aspergillus niger KJC3)
CATATTCTTTCTGGAGGCAAACCCTTCCTTCTGCAACATTCCTTTTCAAT
TTAATATACTCTCCCAATGCATTCTCTACAATGGCGTCCCGGAAAACGAG
TTGCAATCGTGGGAGGAGGTCCTGGATCGATCTCAACTGGCCTTGCCTTC
ATCCAACGGGGCTACGATGTGCGGATTTTCGAGCGACAGCCGGAATGCAA
AGCCATAGGAGGCGCTGTTCTCTTGTCTACTCCTGTTTTGGCGATTCTTC
GGTCCTACGGCTTGGGTCTGGACAACGTCGGTTCATATACAGTCACATAT
TTTAAGAACAAGGCAGGGACTGAGCGCGTTAGACTACCGTTCAATCCACA
AGTTGAGAAACGCATGGGCATTAAAGGCTGGCACTATGGAGTACTTCGTT
CGTCTATCTTCAAAAAAATGCTCGACCTCGTTCCTGGGGGTGTGATCTTT
GGCGGCTATGAGTTTATATCTTATGCCGAGGTTGAAGATGGTATCGAACT
TTCTTTCAAGAACGGCCACCGAGTGACTGCCGATATTCTTGTCGGTGCAG
ATGGCATTCGCTCCAAAGTTTCACGGCAGGCCTTTGGTGATCCTCACCTA
TTTCATACCGGGATTCGTCTGTGGCTTGCATGGTGTGATTACCTTCCCGG
CATTCCTCCCAATTACGGTTTCGTCTCACATGACTGGCAGCACCAAGCCA
GCTTCTTTCCGATGCTTCACGATGGCAAGCCCGGTTTTGAGTGGTGGGTG
GTTGAGCCATCTTGGGATGGAAAGCCTGTCCCGGAGAACCCTAAGGCGCA
CCTGACCGAAATTCTCAAAGATTGGGCACAGCCGATGCCTCGATTTTTAG
ACGCCACCAACTTCGACACCCAACTTTATCGTTGGGAAATATTTAATCGG
CCATCCATGAAGAAATGGTCTAAGGGACGGGTGGTTTGCGTTGGCGACGC
TGTGCATCCTGTCTCGCCTTATGCTGCCTACGGTATGGGCATGGCAATCG
AAGACGGGTATTTTCTTGCCAAAGCGTTGGATGGTGTCGATTTGCGCGAC
GTGGAAGCGGTCAAAGCCGGATGCGAAATTTATGAGAAACAACGAGTTGA
CTATGTCAATCACAACATGGAATTTGCACGCTTTCTTGGTAAATTGTTCC
ATGCGGTGCCTCGACCTCTTGCCAACATTCGTGATTTCATCTTCGACTAC
ACCCCGTTGCTAAGCAGGTATCTTGGGGATGGTTACCTTAAGAAGGCCGA
GCAGGAAACACTCGGCATGAAGGAGCTGCAAGTCACCCCTTGACAATACT
TTTGGCTGTGGGATATCTACAACTAAGTGCGCTCACCCGGAGCCATAATG
GTGGAGAAGGGCAAGGAGATGAAAAATAGGTGAATAAGATGACTAGCAGG
GCATTACGCAGTGGTGACTCTTGACCTCAGCAACGCGGGCGACGCCATGG
GTAGTGATGGTTTATTTTAACGCTGTAAAATTACAAGAAATCTGAT back to topCoding sequence (CDS) from alignment at ch3:5213826..5215321+ >KJC3_004417-T1 ID=KJC3_004417-T1|Name=KJC3_004417-T1|organism=Aspergillus niger KJC3|type=CDS|length=1227bp|location=Sequence derived from alignment at ch3:5213826..5215321+ (Aspergillus niger KJC3)
ATGCATTCTCTACAATGGCGTCCCGGAAAACGAGTTGCAATCGTGGGAGG
AGGTCCTGGATCGATCTCAACTGGCCTTGCCTTCATCCAACGGGGCTACG
ATGTGCGGATTTTCGAGCGACAGCCGGAATGCAAAGCCATAGGAGGCGCT
GTTCTCTTGTCTACTCCTGTTTTGGCGATTCTTCGGTCCTACGGCTTGGG
TCTGGACAACGTCGGTTCATATACAGTCACATATTTTAAGAACAAGGCAG
GGACTGAGCGCGTTAGACTACCGTTCAATCCACAAGTTGAGAAACGCATG
GGCATTAAAGGCTGGCACTATGGAGTACTTCGTTCGTCTATCTTCAAAAA
AATGCTCGACCTCGTTCCTGGGGGTGTGATCTTTGGCGGCTATGAGTTTA
TATCTTATGCCGAGGTTGAAGATGGTATCGAACTTTCTTTCAAGAACGGC
CACCGAGTGACTGCCGATATTCTTGTCGGTGCAGATGGCATTCGCTCCAA
AGTTTCACGGCAGGCCTTTGGTGATCCTCACCTATTTCATACCGGGATTC
GTCTGTGGCTTGCATGGTGTGATTACCTTCCCGGCATTCCTCCCAATTAC
GGTTTCGTCTCACATGACTGGCAGCACCAAGCCAGCTTCTTTCCGATGCT
TCACGATGGCAAGCCCGGTTTTGAGTGGTGGGTGGTTGAGCCATCTTGGG
ATGGAAAGCCTGTCCCGGAGAACCCTAAGGCGCACCTGACCGAAATTCTC
AAAGATTGGGCACAGCCGATGCCTCGATTTTTAGACGCCACCAACTTCGA
CACCCAACTTTATCGTTGGGAAATATTTAATCGGCCATCCATGAAGAAAT
GGTCTAAGGGACGGGTGGTTTGCGTTGGCGACGCTGTGCATCCTGTCTCG
CCTTATGCTGCCTACGGTATGGGCATGGCAATCGAAGACGGGTATTTTCT
TGCCAAAGCGTTGGATGGTGTCGATTTGCGCGACGTGGAAGCGGTCAAAG
CCGGATGCGAAATTTATGAGAAACAACGAGTTGACTATGTCAATCACAAC
ATGGAATTTGCACGCTTTCTTGGTAAATTGTTCCATGCGGTGCCTCGACC
TCTTGCCAACATTCGTGATTTCATCTTCGACTACACCCCGTTGCTAAGCA
GGTATCTTGGGGATGGTTACCTTAAGAAGGCCGAGCAGGAAACACTCGGC
ATGAAGGAGCTGCAAGTCACCCCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0071949 | FAD binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004417-T1.utr5p1 | KJC3_004417-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004417-T1.utr3p1 | KJC3_004417-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036188 |
| DBxref | InterPro:IPR002938 |
| DBxref | PFAM:PF01494 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5213826..5215321 + |
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