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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5230833..5234396+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004421-T2 ID=KJC3_004421-T2|Name=KJC3_004421-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3564bp|location=Sequence derived from alignment at ch3:5230833..5234396+ (Aspergillus niger KJC3)
TCAAATCCATTTCGATCCTCCGTTGCCCCGGGATCTTGATTCCCAAAACC
TGGATCGGCTCTGTGAAATCTTCCGCAAAAACCAATGTCGCCGCCTGGAT
GTAGACAATCACGTCCCTGCGATCGTGTCTCGGCAAGATCTCGCTGACGC
GTTGCGGAAAGCAAATATTCCGCAGCCAAGACTGCTGACTAATGACCCCC
GACAATGTCCCCGACTGGAATTCATGGTGGGGCAACTACGTGCCCTCCAT
GGCCGTCATCGTGTGCAAGCAGGAGCTACAGTGCTTCCTCCTATTGATCG
CTGGTGGACTGTTGACCTTTACGAGCACGGTGGGTCTTGTGTGAATGATT
GTTTCGTCATGTAAAGACTGACAACACTTTAGATATTGGTGAAGAACTAA
AGACCTCTCTGGTAGAGGAATATGCAAATCAGAAGAAACCGACCGATGGT
GAAATATATCGTAAGATCCGGCAGTACGAGTGCGAGGATAATGAAGCTTT
CCGAGAGCGGTGGCTTGTCCGACTGTCATCCAGCAACCAAGACCGCTTGG
CTCAATTAGACAAGAGGAGAAACCGTCGTCTTCGGCGAGCCTTCAATCTG
TTACTGCCAATACCCGGGCTTTGGCCACATGGGATGAGGATTAGCATGCT
CCACCGATTGATCGCCACAGGCTGTGTTGAAGTGGGTTTTTGGTCCCATT
TTCCATCTTGCTCATCAATTTCTCATTTACTCTGTAGGAGATTGTAAACT
ATCTCGATCATATTAGAAATTTTTGGTCCTCCTTAGTCGACTCTGATCCT
ACTTCGATGAAGAAAATCGACACGGATACTGTTGACGCCTTGCAATTACT
GGCACCGAAGAAATCCCGGACCGATGCGAAAAAGGCCTGTGGGTTGATCC
TTAGTGGCCAGGCATTCGCGGAATTTAGCGAGGAAGAGCGAAGGATAATA
TGGAGACGAATGAAAGACTCTGACGGGCTGATTCCATCCCTGTACACTTT
TTTTGAGGATTTCAAGTATTTGGAAAGTTGTGCGCATTGTGTAAAGCGCC
TTTTTGGACCGTCTGATGAATCTATTTGGAGAACCATGGCGTCGATGTTT
GTTCCCTCTTTAGATGGAGATATAGGAGAGTGTGAGATCCAGACTTCCGA
GTCTACTTTCCGGCGTCAGCGTGCAACCGACATGGAGCGGCTCGACATGG
GATACCTACAGGTGTGGCTATATGCAATGCGACATTATCCGTTGATGCCT
CCGGACGCAAAGAATGATGATGACCTGCTAGCTAAGCCAGCACGTGCCAA
AGCCGATGAAAGAGCGATCTACGAGATGGCCGGACTTGCTCGCCGGCTCG
GATTCAAGTCTCCAGAAATCGATGTTTTGGTAGATGGCTCCCCCGACCAT
CAGATTGCACGGGCCGCTCTGCTGCAGGCCAGGAAACCTAATCGGTTCCG
ATACGACACCCGACAGTTCGATATCCTGGTGAACCGAATTGCCGAGTGCT
TCGCAATGGCGGCGCCCTACGAACCTGATATAGGACACGATCTTCTTGCA
GACAGCACCATGAAGCCCCGGGCTCGCTGCGGGATGCCACGAACACGAAC
CCACAAGCAAGATAGCCCTTTGCTCTTCCTGGACCGTTTGCACGCCGACG
ACGTTGGGGTCACTGACACAATCACTAGCTTTTATGTCCGCCGCTGTGTC
TATTTCTCCTTCTTCGGAAGATCTGCACAACCTGGACCCACTGGCAGCGA
CCGGGCCGGAGAGTCTGCCGGGGATATTCCCCGGTCGCCGTTATTCGTCG
GAGAAGATGGTCTATCTGGCAACCATGGATCCGCTCTGCAAGTGGCTTTA
CCAAGGGAGTCACCTCAACAAGAACAAGAACAGCCACAGGGGCAAGCGGC
CCGACGGGATGAGGAGCAACGTTCTCTGCGCCGCCAGCAGGTACCGAGAG
CTGAAAGAAAACGGGACATTGTGAACCGACGACGGACGCGGAAGGCTCAG
ATGCGCAGGCGTCAGTTGCGTCCAACGGGAGAAGGGAACGACGATTCCGA
GGAGTACGACCCCATGGAGTTGGAGTATCTGAGCATGGAGCCCTCGGATC
AGGATATGTCCGACTGTTCATCCCAGGAACTCCCTGACGAAGGCCCACAA
GACGAATCAACGCAGTCCAATCCAGCAACCGCCCTCACGCTGCACTCCAC
ACATGGCCCTGCCGTCCTGGAAGAAGCAGATACCCATAGCCATTGCACGA
GAATTTCACTTGAGGCAACCCCGCTTGAGCAGGACTCAGAAGACAGACCA
ACAGTAGAGGGTCCACCTCAGGACGATGGTCTTGAGGATCAGGCGCGTAT
TGATCATCCATCACAGCCACAGTCCACGGAAATTGAGGACGGCAATTCTT
CAAGTGTTGGCGGCCCTGGTGGGCAACAACCGGTCTTGGATGAATACCTT
GACCAACTGATGAGGGCCCAGGAAGAACAGGAAAGGTTGGAGGAGGAGTT
AGAACGTGAGCGACTCGAGGAAGAGCTTGGTCTTTCTCACCAGGAGCAGC
CAGTTCTGATGCCGTCACCTAGACCTCCAGAAAGGCAGAATTCACCGCCG
ACGCCCCCTGACGACCAACCGGCGGATGTGACGCATAATAGGAACCCAGA
TGTAGCACAGGCTGTTGTTCCAGAACCGTCTCAAGACCCATCGCCAGCTT
CTCACCATGAAGAACAGCCGGAGCCCCCAGTGGAGAATCTCGAACATGTA
GCACCTACTACCGAGGATGGTGCCAGCCACCCCCTTGGTCAGGGTCCTCC
CGCAGATGATGCTGGGCCTCCAGCCCCGGTGGAGGCACCAAAACCACCAG
CTTTTGTTGAGATTTGCTTCTGGCGGTTTGAACGAGAGGAATGGAAGCGG
TCCGACCGCCTCCGAGTGGATCCTTCCGATCCATCGCCGGTGGAACGAAT
TGCAAGAAAGTATTCATGGAAGAACTATTCGCTGTATGATCGGAATCTAC
AAAGCCTCAGCCCCGCCCAATGTTATCGCGCAGCCACTGTCGACGGTAAT
AATGCCATATTCCTGATCTCTGAGCATGAAGAGCAGAGGCTCGCAGCCGA
AGGCCGGCTCACCAAGGACAAGCAGCTTCTATCGTTGGTCTCTCGAGTGC
TAGATCGGGCCGAACTCGAACCGAAGTCTCCCACCAAACGTCACCGTTCT
ATGTCGCTCGGGAAAATGTGAGAGCATTCTCAGGACTGGTTTACACATAT
GTGGCTCTATCTAAGACTCTTATATACATATGAGCAGGATTGGTTCGAGA
ATGACGTCTCCGAGCGGCTAGCAGTATAAGAAAAGCCTTTTGTGTTGCCC
TACGACACGTACGGATTATTTTATGTAGCGATACTTGAGCAGCAACTTAT
GGGAATAAGTTAATATGCGAAAGATCATAAGTTACTTTGGGACATGGAAG
TGTCAGACCAGAAAGAGTCTTCCAGGATGGAATGGCTCTCATGAAAATCT
TCTTGTGAGGAAAATAGCCACATGAGAATTGTTCTGAAATCTAAATACAA
ATAAGAAGCATAGA back to topCoding sequence (CDS) from alignment at ch3:5230833..5234396+ >KJC3_004421-T2 ID=KJC3_004421-T2|Name=KJC3_004421-T2|organism=Aspergillus niger KJC3|type=CDS|length=2415bp|location=Sequence derived from alignment at ch3:5230833..5234396+ (Aspergillus niger KJC3)
ATGAAGAAAATCGACACGGATACTGTTGACGCCTTGCAATTACTGGCACC
GAAGAAATCCCGGACCGATGCGAAAAAGGCCTGTGGGTTGATCCTTAGTG
GCCAGGCATTCGCGGAATTTAGCGAGGAAGAGCGAAGGATAATATGGAGA
CGAATGAAAGACTCTGACGGGCTGATTCCATCCCTGTACACTTTTTTTGA
GGATTTCAAGTATTTGGAAAGTTGTGCGCATTGTGTAAAGCGCCTTTTTG
GACCGTCTGATGAATCTATTTGGAGAACCATGGCGTCGATGTTTGTTCCC
TCTTTAGATGGAGATATAGGAGAGTGTGAGATCCAGACTTCCGAGTCTAC
TTTCCGGCGTCAGCGTGCAACCGACATGGAGCGGCTCGACATGGGATACC
TACAGGTGTGGCTATATGCAATGCGACATTATCCGTTGATGCCTCCGGAC
GCAAAGAATGATGATGACCTGCTAGCTAAGCCAGCACGTGCCAAAGCCGA
TGAAAGAGCGATCTACGAGATGGCCGGACTTGCTCGCCGGCTCGGATTCA
AGTCTCCAGAAATCGATGTTTTGGTAGATGGCTCCCCCGACCATCAGATT
GCACGGGCCGCTCTGCTGCAGGCCAGGAAACCTAATCGGTTCCGATACGA
CACCCGACAGTTCGATATCCTGGTGAACCGAATTGCCGAGTGCTTCGCAA
TGGCGGCGCCCTACGAACCTGATATAGGACACGATCTTCTTGCAGACAGC
ACCATGAAGCCCCGGGCTCGCTGCGGGATGCCACGAACACGAACCCACAA
GCAAGATAGCCCTTTGCTCTTCCTGGACCGTTTGCACGCCGACGACGTTG
GGGTCACTGACACAATCACTAGCTTTTATGTCCGCCGCTGTGTCTATTTC
TCCTTCTTCGGAAGATCTGCACAACCTGGACCCACTGGCAGCGACCGGGC
CGGAGAGTCTGCCGGGGATATTCCCCGGTCGCCGTTATTCGTCGGAGAAG
ATGGTCTATCTGGCAACCATGGATCCGCTCTGCAAGTGGCTTTACCAAGG
GAGTCACCTCAACAAGAACAAGAACAGCCACAGGGGCAAGCGGCCCGACG
GGATGAGGAGCAACGTTCTCTGCGCCGCCAGCAGGTACCGAGAGCTGAAA
GAAAACGGGACATTGTGAACCGACGACGGACGCGGAAGGCTCAGATGCGC
AGGCGTCAGTTGCGTCCAACGGGAGAAGGGAACGACGATTCCGAGGAGTA
CGACCCCATGGAGTTGGAGTATCTGAGCATGGAGCCCTCGGATCAGGATA
TGTCCGACTGTTCATCCCAGGAACTCCCTGACGAAGGCCCACAAGACGAA
TCAACGCAGTCCAATCCAGCAACCGCCCTCACGCTGCACTCCACACATGG
CCCTGCCGTCCTGGAAGAAGCAGATACCCATAGCCATTGCACGAGAATTT
CACTTGAGGCAACCCCGCTTGAGCAGGACTCAGAAGACAGACCAACAGTA
GAGGGTCCACCTCAGGACGATGGTCTTGAGGATCAGGCGCGTATTGATCA
TCCATCACAGCCACAGTCCACGGAAATTGAGGACGGCAATTCTTCAAGTG
TTGGCGGCCCTGGTGGGCAACAACCGGTCTTGGATGAATACCTTGACCAA
CTGATGAGGGCCCAGGAAGAACAGGAAAGGTTGGAGGAGGAGTTAGAACG
TGAGCGACTCGAGGAAGAGCTTGGTCTTTCTCACCAGGAGCAGCCAGTTC
TGATGCCGTCACCTAGACCTCCAGAAAGGCAGAATTCACCGCCGACGCCC
CCTGACGACCAACCGGCGGATGTGACGCATAATAGGAACCCAGATGTAGC
ACAGGCTGTTGTTCCAGAACCGTCTCAAGACCCATCGCCAGCTTCTCACC
ATGAAGAACAGCCGGAGCCCCCAGTGGAGAATCTCGAACATGTAGCACCT
ACTACCGAGGATGGTGCCAGCCACCCCCTTGGTCAGGGTCCTCCCGCAGA
TGATGCTGGGCCTCCAGCCCCGGTGGAGGCACCAAAACCACCAGCTTTTG
TTGAGATTTGCTTCTGGCGGTTTGAACGAGAGGAATGGAAGCGGTCCGAC
CGCCTCCGAGTGGATCCTTCCGATCCATCGCCGGTGGAACGAATTGCAAG
AAAGTATTCATGGAAGAACTATTCGCTGTATGATCGGAATCTACAAAGCC
TCAGCCCCGCCCAATGTTATCGCGCAGCCACTGTCGACGGTAATAATGCC
ATATTCCTGATCTCTGAGCATGAAGAGCAGAGGCTCGCAGCCGAAGGCCG
GCTCACCAAGGACAAGCAGCTTCTATCGTTGGTCTCTCGAGTGCTAGATC
GGGCCGAACTCGAACCGAAGTCTCCCACCAAACGTCACCGTTCTATGTCG
CTCGGGAAAATGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004421-T2.utr5p1 | KJC3_004421-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004421-T2.utr3p1 | KJC3_004421-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR022198 |
| DBxref | PFAM:PF12520 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5230833..5234396 + |
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