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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5257515..5258339- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004427-T1 ID=KJC3_004427-T1|Name=KJC3_004427-T1|organism=Aspergillus niger KJC3|type=mRNA|length=825bp|location=Sequence derived from alignment at ch3:5257515..5258339- (Aspergillus niger KJC3)
AGAAGAGAAGAGAAGTGAACCGAAACAAAAACCAGTAAAGCAGGTCCACA
ATGTTCCAACTCAAGGTACACCCATCCCATACCAACCTCATCACACTCAC
ACACACACACACACACACACCCATTCTTCACAAATCACCAACAACAAACC
AACCAAAACATCTAATCTAGACTATCCTCCTCTCCCTCCCCCTCCTCCTC
ACAACCACGCTCGCCGCCCCCTCCACTTCGCTCGATACCCGCTCCGACTC
CAAATGCGTCTACTACTGCGGCAGCCACTGCTACTGGGCCAGCGACATCA
GCAAAGCGCAAGCAAAGGGATACTCGCTACACGAAGAAGGGCGCACGATC
GACGACTACCCGCACGTCTACCACGACTACGAAGGATTCGACTTCACCGT
CTCGGGCACATACTACGAGTACCCGATTCTGGATGATTACAAGGTGTATG
ATGGAGGGTCTCCCGGTGCGGATCGGATCATTTTCAATGGGGAGGATGAG
TTTGCGGGGTTGATTACGCATACGGGCGCGGAGGAATATGATGGGTTTGT
GGCTTGTGAGGCTGTTTAGGTTTATTTTGTTTTCTAGGTTGGATAGGTGG
TAGGGGGATGGAAGAGTACTGGAGGATGAGGGGAGAAATGAAAAGATGAT
TCGATTTTGGTTAACCCACTGTAGGTGGGAAAGGGGTACTTGGTTTTGTG
GGTAGAAAAGTACACAGTAGTCAGTCCGGGTCGGCCAGTTATAGAGAGAT
CAACTAGGCGGCATCAAGTACGGCGGTTAATAACGGCCATCGGGCAAAAA
CGATTTCATTGTGTTTACTGCTGGC back to topCoding sequence (CDS) from alignment at ch3:5257515..5258339- >KJC3_004427-T1 ID=KJC3_004427-T1|Name=KJC3_004427-T1|organism=Aspergillus niger KJC3|type=CDS|length=828bp|location=Sequence derived from alignment at ch3:5257515..5258339- (Aspergillus niger KJC3)
ACTATCCTCCTCTCCCTCCCCCTCCTCCTCACAACCACGCTCGCCGCCCC
CTCCACTTCGCTCGATACCCGCTCCGACTCCAAATGCGTCTACTACTGCG
GCAGCCACTGCTACTGGGCCAGCGACATCAGCAAAGCGCAAGCAAAGGGA
TACTCGCTACACGAAGAAGGGCGCACGATCGACGACTACCCGCACGTCTA
CCACGACTACGAAGGATTCGACTTCACCGTCTCGGGCACATACTACGAGT
ACCCGATTCTGGATGATTACAAGGTGTATGATGGAGGGTCTCCCGGTGCG
GATCGGATCATTTTCAATGGGGAGGATGAGTTTGCGGGGTTGATTACGCA
TACGGGCGCGGAGGAATATGATGGGTTTGTGGCTTGTGAGGCTGTTTAGA
TGTTCCAACTCAAGACTATCCTCCTCTCCCTCCCCCTCCTCCTCACAACC
ACGCTCGCCGCCCCCTCCACTTCGCTCGATACCCGCTCCGACTCCAAATG
CGTCTACTACTGCGGCAGCCACTGCTACTGGGCCAGCGACATCAGCAAAG
CGCAAGCAAAGGGATACTCGCTACACGAAGAAGGGCGCACGATCGACGAC
TACCCGCACGTCTACCACGACTACGAAGGATTCGACTTCACCGTCTCGGG
CACATACTACGAGTACCCGATTCTGGATGATTACAAGGTGTATGATGGAG
GGTCTCCCGGTGCGGATCGGATCATTTTCAATGGGGAGGATGAGTTTGCG
GGGTTGATTACGCATACGGGCGCGGAGGAATATGATGGGTTTGTGGCTTG
TGAGGCTGTTTAGATGTTCCAACTCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004540 | ribonuclease activity |
| GO:0004521 | endoribonuclease activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004427-T1.utr3p1 | KJC3_004427-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004427-T1.utr5p1 | KJC3_004427-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-20) |
| DBxref | InterPro:IPR016191 |
| DBxref | InterPro:IPR000026 |
| DBxref | PFAM:PF00545 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5257515..5258339 - |
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