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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5312074..5312858- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004449-T1 ID=KJC3_004449-T1|Name=KJC3_004449-T1|organism=Aspergillus niger KJC3|type=mRNA|length=785bp|location=Sequence derived from alignment at ch3:5312074..5312858- (Aspergillus niger KJC3)
ACTCCCTCTCCCTCTTTTTCTGTAAACAAACACACACTAGACACCGACGA
CACTTTTCTCTCCAAGTCAAATCCTCTGACAGATCTTTCTCGCTAAAGAG
GCAATAAAAGAAGAACTCATCGCTTCTTGAACCATGGACCAGCTCAACAG
GTAAACACTCCCCTCCCCCTCCCCCTCCCCCAAGCCTCATACACCCTGGA
ACTCTTTTCCGAAGAGCAACACCCAGATGCAGAGGGGAATTCTGACATCC
CGTCCAGCAAGCAAGAAATCAACGACGCCATCGCAAATCACGCGTCCTTC
ATCCTGATGTTCACGGCCGTGTGGAGTGACGTCGGCAATGCCACCAAGGA
AAAGTTTGAGAGGTAAAGCAGCCAGCCTGAATTCCCTACTCTGTGATGTT
TCGAACGATGATGCATTTACCTCGTTTCGCCTCTTTCATTGCTTGATACT
AACTCAAGAATACTAGCATTGGTGCCAAATACCCTACCGTGTACATGGCC
TGGGTTAGCACCGATGACCATCCCGAGCTGGCTGAGGAATGGGGGTACAC
TGCTATTCCGGCTACCGTTGGTTATAAGAATGGCACCGAGGTGGAACATT
ACATCGGTCCTCAATTATTGGACCAGCAGGTCGAGGCGTTTATCAAGAAG
GTGGTCTAAATTAGTGAGGGAAGGTCTGACCTTCTACTTGGTGGTTGTCA
TTTGTTAACTAGACGATGGATGCCACGAGTATTTGTATCTAGATTATACT
ATTAAAGTATCATCCATATACAGTGCATTGAGTAA back to topCoding sequence (CDS) from alignment at ch3:5312074..5312858- >KJC3_004449-T1 ID=KJC3_004449-T1|Name=KJC3_004449-T1|organism=Aspergillus niger KJC3|type=CDS|length=945bp|location=Sequence derived from alignment at ch3:5312074..5312858- (Aspergillus niger KJC3)
CATTGGTGCCAAATACCCTACCGTGTACATGGCCTGGGTTAGCACCGATG
ACCATCCCGAGCTGGCTGAGGAATGGGGGTACACTGCTATTCCGGCTACC
GTTGGTTATAAGAATGGCACCGAGGTGGAACATTACATCGGTCCTCAATT
ATTGGACCAGCAGGTCGAGGCGTTTATCAAGAAGGTGGTCTAACAAGCAA
GAAATCAACGACGCCATCGCAAATCACGCGTCCTTCATCCTGATGTTCAC
GGCCGTGTGGAGTGACGTCGGCAATGCCACCAAGGAAAAGTTTGAGAGAT
GGACCAGCTCAACAGCATTGGTGCCAAATACCCTACCGTGTACATGGCCT
GGGTTAGCACCGATGACCATCCCGAGCTGGCTGAGGAATGGGGGTACACT
GCTATTCCGGCTACCGTTGGTTATAAGAATGGCACCGAGGTGGAACATTA
CATCGGTCCTCAATTATTGGACCAGCAGGTCGAGGCGTTTATCAAGAAGG
TGGTCTAACAAGCAAGAAATCAACGACGCCATCGCAAATCACGCGTCCTT
CATCCTGATGTTCACGGCCGTGTGGAGTGACGTCGGCAATGCCACCAAGG
AAAAGTTTGAGAGATGGACCAGCTCAACAGCATTGGTGCCAAATACCCTA
CCGTGTACATGGCCTGGGTTAGCACCGATGACCATCCCGAGCTGGCTGAG
GAATGGGGGTACACTGCTATTCCGGCTACCGTTGGTTATAAGAATGGCAC
CGAGGTGGAACATTACATCGGTCCTCAATTATTGGACCAGCAGGTCGAGG
CGTTTATCAAGAAGGTGGTCTAACAAGCAAGAAATCAACGACGCCATCGC
AAATCACGCGTCCTTCATCCTGATGTTCACGGCCGTGTGGAGTGACGTCG
GCAATGCCACCAAGGAAAAGTTTGAGAGATGGACCAGCTCAACAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004449-T1.utr3p1 | KJC3_004449-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004449-T1.utr5p1 | KJC3_004449-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036249 |
| DBxref | InterPro:IPR013766 |
| DBxref | PFAM:PF00085 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5312074..5312858 - |
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