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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5316357..5318641- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004451-T1 ID=KJC3_004451-T1|Name=KJC3_004451-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2285bp|location=Sequence derived from alignment at ch3:5316357..5318641- (Aspergillus niger KJC3)
CGCACTCCGATATCCCCATCATGGTCCATTCAACAACATTATGACGGCTA
TTCTCCTTCCAGTCGAGCTCATCGAACAGATTGTGGGCCACCTTGAATAT
GCAAGTGATATCAATGCCCTCGCTCGCACTCATGGAACCTTCTACCGCGT
CGTGAATCCCATGCTGTATCGATATAATGTACAACATAATAACGGCTCTG
CGTTATCCTGGGGAATTGAGCACAGATGCCTCGCAACTGTGCAGAAGACT
CTGAAGGCCGGTGCGTCGGTTAATGAGTGTGATCCGGATACTCTCTGGCG
ACCTATGCCGTTGGCGGTTTTAGAGGGCGATGAAGCCATTGTCCGGTATC
TGTATGAGCAGGGAGTCGACATCCGTCACACCCGTGGCTGGCTCAATCCG
CGCCATGAGGACTATGACAGGGGCCCTGGAAGCCTGTTGTTGCTGGCTGC
CGTACGTGGTCATGAAGCCCTGGTCCGCTTCTTCATGGATCACCTGCCGC
GGCCGTTTCATGTCGATTACCCTGCCGATTCGGACGGACGAACACCCCTT
ATAGAGGCTGCCGAAGGAGGCCATCTAGCCATTGTGCAGCTATTGGTCGA
CGCTGGAGCAGACATCCACGCCCGAGATCACCAACAAATGACTCCCCTCA
TGCTTTCTGCGCGCGGGGGCCACCTTGAGGTCATGCAGTTCCTGCTCCAA
CGGGGAGCCGATCCCACCATCCCCACGGTACTGGACGGATGCTCCGCCTT
GTGCTGTGCAGCGCGTCTGGGTCACTTCGAGTGTGTCCGGTGTCTGCTCG
ATGCGGGCGTGATGGATCAATTAAACCGCTGCCAAGGCTCAGAATTGCCG
TCGTCCCATAATGCTGCGATGTGTCCCCTCACGTCAAGCGCACAATGGAA
ATGCGACAACGTAGTTGATATCCTCTTTGAACGATGGGATTACCTGACTA
GCACCGTTGAGCCCGCAGACAAGGCTGCGCTGCTGTGCGTAGCCGCGGCG
CGCGGGAATACGGCTCTGGTTCGGCAGCTACTTGAGTGCCATGGGTACGA
CCCAAATGCTCGATATGGTCAATCGTTCATCCTGGATGATCTCCCGACTG
CCATTTGCTGGGCTGTAGTCCGAGGTCACGCCGAGGTCGTCCAGGTGCTC
CTCGCTCACGGTGCCGAGGCATCTCCATCGCCGGGACGGATGCGTATGCG
GAAGCCCTTAATTGAGGCCATTATCCAGGGCTCGGAAGCCATGGTCTCCA
TGTTACTTAGCGCCGGGGCAGACCCCAATGATCAGGATGCGCAGGACGGT
TATGCGGCTTTAAGGCATGCCATCCCCTTCGAGGGCATATCCCGTCGCTT
GCTCGCCGCGGGGGCTGATCCTACCGCCGTAAATCGCCCGGGTGATATAT
TACCCGCCATCGTTCTGGCGTCAGGTCGTACGGCAATAGTCCAGATGCTG
ATCGATCAGGGACTCGATCTGTCGCGCCATATGAGTCGGGCCAATCTCCT
TCACCAAGCCATTCGCGGGGGGCCGGCGGTTCTCGATCTGCTCGTCCGGA
CGGGGAAATGGAATAACTACATCTTCCCAGAGCACTTGGACAAAACCGCG
TGCGAGCAGGCTCTCGGTATCGCGGCTTCTACGGGAAAGATTGAGACACT
TCAGTGGCTGCTGGACCGAGGCTTTCCGGTAGCCCAGTCGTCGCCCACTG
TCAACTTGCTCGCTGAAGCAGCCTGTACAGCTGCATCAGATGCAGACGCC
GCCAAAACAATCGATCTCTTGCTTCAACACGGCCTGGACATAAACGAGCT
TATTAAAGAACCCATTGGCTGCGAGACGCCACTGTCACACGTGGCCATTC
ATTACAATAGGCATATGGATAGCCACACCGGCCGCGTCCGTATGCGCATG
CTGCTCAATCGTGGCGCCCATCTCCTGCCACCGCGCAGCCTTTCCCAGCG
GTACAATCCTTATACATCCACTAAAGTCGTCTGCGTTGGTAGAAGCTCTG
ATCTCGATGAGATGATTTTTCAGGAGATGGAGGCCCGGCGTGAGCCGTGG
AGAGCGGTCGAATGGCTCTTCCAGTGCGCTGAGCTCCATGCGCGTGAACG
CTGGGATTGGAAGGGCGTTAGGATGGTGAGACAGTATTCGTGGAGGGTGC
GATATCCTGTACCTAATTAATTCTATACTAGGACAATAAATTGGTGGCAA
TTTAATCCGTTCCTACTATAACTAGGACTACTATTACGTACGTTCAACGG
GCTTTTGGGATGGGTATAGAGCCTGTATAGACAAG back to topCoding sequence (CDS) from alignment at ch3:5316357..5318641- >KJC3_004451-T1 ID=KJC3_004451-T1|Name=KJC3_004451-T1|organism=Aspergillus niger KJC3|type=CDS|length=4218bp|location=Sequence derived from alignment at ch3:5316357..5318641- (Aspergillus niger KJC3)
GACAATAAATTGGTGGCAATTTAAATGACGGCTATTCTCCTTCCAGTCGA
GCTCATCGAACAGATTGTGGGCCACCTTGAATATGCAAGTGATATCAATG
CCCTCGCTCGCACTCATGGAACCTTCTACCGCGTCGTGAATCCCATGCTG
TATCGATATAATGTACAACATAATAACGGCTCTGCGTTATCCTGGGGAAT
TGAGCACAGATGCCTCGCAACTGTGCAGAAGACTCTGAAGGCCGGTGCGT
CGGTTAATGAGTGTGATCCGGATACTCTCTGGCGACCTATGCCGTTGGCG
GTTTTAGAGGGCGATGAAGCCATTGTCCGGTATCTGTATGAGCAGGGAGT
CGACATCCGTCACACCCGTGGCTGGCTCAATCCGCGCCATGAGGACTATG
ACAGGGGCCCTGGAAGCCTGTTGTTGCTGGCTGCCGTACGTGGTCATGAA
GCCCTGGTCCGCTTCTTCATGGATCACCTGCCGCGGCCGTTTCATGTCGA
TTACCCTGCCGATTCGGACGGACGAACACCCCTTATAGAGGCTGCCGAAG
GAGGCCATCTAGCCATTGTGCAGCTATTGGTCGACGCTGGAGCAGACATC
CACGCCCGAGATCACCAACAAATGACTCCCCTCATGCTTTCTGCGCGCGG
GGGCCACCTTGAGGTCATGCAGTTCCTGCTCCAACGGGGAGCCGATCCCA
CCATCCCCACGGTACTGGACGGATGCTCCGCCTTGTGCTGTGCAGCGCGT
CTGGGTCACTTCGAGTGTGTCCGGTGTCTGCTCGATGCGGGCGTGATGGA
TCAATTAAACCGCTGCCAAGGCTCAGAATTGCCGTCGTCCCATAATGCTG
CGATGTGTCCCCTCACGTCAAGCGCACAATGGAAATGCGACAACGTAGTT
GATATCCTCTTTGAACGATGGGATTACCTGACTAGCACCGTTGAGCCCGC
AGACAAGGCTGCGCTGCTGTGCGTAGCCGCGGCGCGCGGGAATACGGCTC
TGGTTCGGCAGCTACTTGAGTGCCATGGGTACGACCCAAATGCTCGATAT
GGTCAATCGTTCATCCTGGATGATCTCCCGACTGCCATTTGCTGGGCTGT
AGTCCGAGGTCACGCCGAGGTCGTCCAGGTGCTCCTCGCTCACGGTGCCG
AGGCATCTCCATCGCCGGGACGGATGCGTATGCGGAAGCCCTTAATTGAG
GCCATTATCCAGGGCTCGGAAGCCATGGTCTCCATGTTACTTAGCGCCGG
GGCAGACCCCAATGATCAGGATGCGCAGGACGGTTATGCGGCTTTAAGGC
ATGCCATCCCCTTCGAGGGCATATCCCGTCGCTTGCTCGCCGCGGGGGCT
GATCCTACCGCCGTAAATCGCCCGGGTGATATATTACCCGCCATCGTTCT
GGCGTCAGGTCGTACGGCAATAGTCCAGATGCTGATCGATCAGGGACTCG
ATCTGTCGCGCCATATGAGTCGGGCCAATCTCCTTCACCAAGCCATTCGC
GGGGGGCCGGCGGTTCTCGATCTGCTCGTCCGGACGGGGAAATGGAATAA
CTACATCTTCCCAGAGCACTTGGACAAAACCGCGTGCGAGCAGGCTCTCG
GTATCGCGGCTTCTACGGGAAAGATTGAGACACTTCAGTGGCTGCTGGAC
CGAGGCTTTCCGGTAGCCCAGTCGTCGCCCACTGTCAACTTGCTCGCTGA
AGCAGCCTGTACAGCTGCATCAGATGCAGACGCCGCCAAAACAATCGATC
TCTTGCTTCAACACGGCCTGGACATAAACGAGCTTATTAAAGAACCCATT
GGCTGCGAGACGCCACTGTCACACGTGGCCATTCATTACAATAGGCATAT
GGATAGCCACACCGGCCGCGTCCGTATGCGCATGCTGCTCAATCGTGGCG
CCCATCTCCTGCCACCGCGCAGCCTTTCCCAGCGGTACAATCCTTATACA
TCCACTAAAGTCGTCTGCGTTGGTAGAAGCTCTGATCTCGATGAGATGAT
TTTTCAGGAGATGGAGGCCCGGCGTGAGCCGTGGAGAGCGGTCGAATGGC
TCTTCCAGTGCGCTGAGCTCCATGCGCGTGAACGCTGGGATTGGAAGGGC
GTTAGGATGGACAATAAATTGGTGGCAATTTAAATGACGGCTATTCTCCT
TCCAGTCGAGCTCATCGAACAGATTGTGGGCCACCTTGAATATGCAAGTG
ATATCAATGCCCTCGCTCGCACTCATGGAACCTTCTACCGCGTCGTGAAT
CCCATGCTGTATCGATATAATGTACAACATAATAACGGCTCTGCGTTATC
CTGGGGAATTGAGCACAGATGCCTCGCAACTGTGCAGAAGACTCTGAAGG
CCGGTGCGTCGGTTAATGAGTGTGATCCGGATACTCTCTGGCGACCTATG
CCGTTGGCGGTTTTAGAGGGCGATGAAGCCATTGTCCGGTATCTGTATGA
GCAGGGAGTCGACATCCGTCACACCCGTGGCTGGCTCAATCCGCGCCATG
AGGACTATGACAGGGGCCCTGGAAGCCTGTTGTTGCTGGCTGCCGTACGT
GGTCATGAAGCCCTGGTCCGCTTCTTCATGGATCACCTGCCGCGGCCGTT
TCATGTCGATTACCCTGCCGATTCGGACGGACGAACACCCCTTATAGAGG
CTGCCGAAGGAGGCCATCTAGCCATTGTGCAGCTATTGGTCGACGCTGGA
GCAGACATCCACGCCCGAGATCACCAACAAATGACTCCCCTCATGCTTTC
TGCGCGCGGGGGCCACCTTGAGGTCATGCAGTTCCTGCTCCAACGGGGAG
CCGATCCCACCATCCCCACGGTACTGGACGGATGCTCCGCCTTGTGCTGT
GCAGCGCGTCTGGGTCACTTCGAGTGTGTCCGGTGTCTGCTCGATGCGGG
CGTGATGGATCAATTAAACCGCTGCCAAGGCTCAGAATTGCCGTCGTCCC
ATAATGCTGCGATGTGTCCCCTCACGTCAAGCGCACAATGGAAATGCGAC
AACGTAGTTGATATCCTCTTTGAACGATGGGATTACCTGACTAGCACCGT
TGAGCCCGCAGACAAGGCTGCGCTGCTGTGCGTAGCCGCGGCGCGCGGGA
ATACGGCTCTGGTTCGGCAGCTACTTGAGTGCCATGGGTACGACCCAAAT
GCTCGATATGGTCAATCGTTCATCCTGGATGATCTCCCGACTGCCATTTG
CTGGGCTGTAGTCCGAGGTCACGCCGAGGTCGTCCAGGTGCTCCTCGCTC
ACGGTGCCGAGGCATCTCCATCGCCGGGACGGATGCGTATGCGGAAGCCC
TTAATTGAGGCCATTATCCAGGGCTCGGAAGCCATGGTCTCCATGTTACT
TAGCGCCGGGGCAGACCCCAATGATCAGGATGCGCAGGACGGTTATGCGG
CTTTAAGGCATGCCATCCCCTTCGAGGGCATATCCCGTCGCTTGCTCGCC
GCGGGGGCTGATCCTACCGCCGTAAATCGCCCGGGTGATATATTACCCGC
CATCGTTCTGGCGTCAGGTCGTACGGCAATAGTCCAGATGCTGATCGATC
AGGGACTCGATCTGTCGCGCCATATGAGTCGGGCCAATCTCCTTCACCAA
GCCATTCGCGGGGGGCCGGCGGTTCTCGATCTGCTCGTCCGGACGGGGAA
ATGGAATAACTACATCTTCCCAGAGCACTTGGACAAAACCGCGTGCGAGC
AGGCTCTCGGTATCGCGGCTTCTACGGGAAAGATTGAGACACTTCAGTGG
CTGCTGGACCGAGGCTTTCCGGTAGCCCAGTCGTCGCCCACTGTCAACTT
GCTCGCTGAAGCAGCCTGTACAGCTGCATCAGATGCAGACGCCGCCAAAA
CAATCGATCTCTTGCTTCAACACGGCCTGGACATAAACGAGCTTATTAAA
GAACCCATTGGCTGCGAGACGCCACTGTCACACGTGGCCATTCATTACAA
TAGGCATATGGATAGCCACACCGGCCGCGTCCGTATGCGCATGCTGCTCA
ATCGTGGCGCCCATCTCCTGCCACCGCGCAGCCTTTCCCAGCGGTACAAT
CCTTATACATCCACTAAAGTCGTCTGCGTTGGTAGAAGCTCTGATCTCGA
TGAGATGATTTTTCAGGAGATGGAGGCCCGGCGTGAGCCGTGGAGAGCGG
TCGAATGGCTCTTCCAGTGCGCTGAGCTCCATGCGCGTGAACGCTGGGAT
TGGAAGGGCGTTAGGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004451-T1.utr3p1 | KJC3_004451-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004451-T1.utr5p1 | KJC3_004451-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5316357..5318641 - |
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