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KJC3_004458-T1, KJC3_004458-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004458-T1
Unique NameKJC3_004458-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:5336379..5338174+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004458-T1 ID=KJC3_004458-T1|Name=KJC3_004458-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1796bp|location=Sequence derived from alignment at ch3:5336379..5338174+ (Aspergillus niger KJC3)
CAATTCCAGAAAATCCCACCCTAGTCGTTGTTCAACAATGGCCCAGGTGC
AGCTCATCTTATCCAGCAAACACCGGAAGAGCGCCGGGAAGAGATCTAGG
ACAGGTTGTCGTACCTGCCGGTAAGGAGGGGAAGCAGTACATGGAAACTG
ATGGCACGAGACACTAGCACTAACCGAGGACTTTCCATGCCCAGAATCCG
ACGGATCAAATGCGATGAATCGCCAGGACAATGCAACAACTGCGTCTCTG
CTAACTGGACGTGCGACGGATACGATGCGTACCGGTTGCCGCAGCGCCGA
GGTCTACAGGATATAGGCACTCGGCTGGGTTGGATGATGACGTCGGATGA
ACACCGTTGTTATTCCTATTTTCAATATCGTTCCGTTACGAATCTGGCCG
GGTTCTTCGACTCCCCACTCTGGCAGCAGTTGGCCCTACAGATGTCTCGC
ACTGATCCGGCTGTATTTCATGCGGTGAATATGTTGAGTGCTGCGCACCA
GGAGTCGGAATTGCATAATATGCAGATTTCTGCACGGTCACGCATTGGGA
GCCAGCAGTATTACTTTTCTCTTCAGCAGTCCACGCGGGCCATCGCGCTC
CTGAACCAGCGCCGGAACTCCCAGGATCCCCAGCTGCGCCAAACCATCCT
CCTGTGCTGTCTGCTCTTTGTTCTATTCGATGTGCTTGTCGCGCAGTATG
ACAGTGCGTTCACGCATTTACACGGCGGTCTCCGTATTCTAAAAGAACTC
GAAATCCAAGGGAAGCTGGAGTCGGAGGTTGAGCCATCAATAGTTGCCGC
ATTTCGCCGCCTGGATACACAGGCCTCTCTCTATGATACTCGGTTTCCGA
TCCTAAGCCTGGAGTATGGGAATCAATCCCCGCTTAAGTTGTTCGAAGCA
CCAACAGGCGGCTTTACTAGCCTTAGCCAGGTACGAGAGAAAATCACAGT
TCTATTCACAGCGGGTATACCCTTGGTTGCAAGGAGCTGGAGCCTGAACG
GTCCCAACATGGAGACCAACTACGAGTCACTCTACCAAAGTCAACGGCGA
TTGCTAGATGCTTTCGCTGAGTTTGACCTACATTTCACGTCTTTCCGCGT
GACAAAATATCATCAGTTAAGCGAGAAGGAGCAATTGGGAGCAGATATCA
CCTACTTGCTTTACCTTGGTCACACTCTCACACTCAAAACTGTGTTAATT
CGTGGACCAGTGCCAGAGTCTCTGGTTCCGGAATTCATTGCGCTACTTCA
GGCCCATGAAGACATGATCGAGAAGCTCAAGTCCGTCTCGGGCCTTGTAA
TGGACCACGTCATGATTGCCCACATGTACCTTGTGGCCACACAATGCCCA
GACGTGGGGATTCGCATACGCGCTATTCGTCTTTTGCGGTCATGGCCACA
TTACGAGGGCCTTCACAGCTCCAATGTCACTGCTCTGATGGCGTTGGGTG
CGCTCAAAAGGGACTTTCCCAATGAAGACAAGGCCTTGTCGATGTTGCAG
ACGACTGACGCGGAGAATGAATTTCTCGTCGACTCCTTGGAGTCTATCAA
GAATGGCGTGGGAGAACCTACAATTCCGCTTTTCAGGATGTCTGAGTTGC
CGTCACGCCCATGATCATGTAGTGAGCGATAAGCGTGGACTGCGGATACG
CATTCGTAGCTTCCACTCCAGTCAAAGCCGACGTTATCCATCACCACACG
TCTCGAGCATATTTGTAGCACAGAGCGATTCCGAGAACAGGAATAAGCCG
GGGCCAATCTGACGCGCTTGGATCCTGCCATAGGGTATTCCCGAGA
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Coding sequence (CDS) from alignment at ch3:5336379..5338174+

>KJC3_004458-T1 ID=KJC3_004458-T1|Name=KJC3_004458-T1|organism=Aspergillus niger KJC3|type=CDS|length=3006bp|location=Sequence derived from alignment at ch3:5336379..5338174+ (Aspergillus niger KJC3)
ATGGCCCAGGTGCAGCTCATCTTATCCAGCAAACACCGGAAGAGCGCCGG
GAAGAGATCTAGGACAGGTTGTCGTACCTGCCGAATCCGACGGATCAAAT
GCGATGAATCGCCAGGACAATGCAACAACTGCGTCTCTGCTAACTGGACG
TGCGACGGATACGATGCGTACCGGTTGCCGCAGCGCCGAGGTCTACAGGA
TATAGGCACTCGGCTGGGTTGGATGATGACGTCGGATGAACACCGTTGTT
ATTCCTATTTTCAATATCGTTCCGTTACGAATCTGGCCGGGTTCTTCGAC
TCCCCACTCTGGCAGCAGTTGGCCCTACAGATGTCTCGCACTGATCCGGC
TGTATTTCATGCGGTGAATATGTTGAGTGCTGCGCACCAGGAGTCGGAAT
TGCATAATATGCAGATTTCTGCACGGTCACGCATTGGGAGCCAGCAGTAT
TACTTTTCTCTTCAGCAGTCCACGCGGGCCATCGCGCTCCTGAACCAGCG
CCGGAACTCCCAGGATCCCCAGCTGCGCCAAACCATCCTCCTGTGCTGTC
TGCTCTTTGTTCTATTCGATGTGCTTGTCGCGCAGTATGACAGTGCGTTC
ACGCATTTACACGGCGGTCTCCGTATTCTAAAAGAACTCGAAATCCAAGG
GAAGCTGGAGTCGGAGGTTGAGCCATCAATAGTTGCCGCATTTCGCCGCC
TGGATACACAGGCCTCTCTCTATGATACTCGGTTTCCGATCCTAAGCCTG
GAGTATGGGAATCAATCCCCGCTTAAGTTGTTCGAAGCACCAACAGGCGG
CTTTACTAGCCTTAGCCAGGTACGAGAGAAAATCACAGTTCTATTCACAG
CGGGTATACCCTTGGTTGCAAGGAGCTGGAGCCTGAACGGTCCCAACATG
GAGACCAACTACGAGTCACTCTACCAAAGTCAACGGCGATTGCTAGATGC
TTTCGCTGAGTTTGACCTACATTTCACGTCTTTCCGCGTGACAAAATATC
ATCAGTTAAGCGAGAAGGAGCAATTGGGAGCAGATATCACCTACTTGCTT
TACCTTGGTCACACTCTCACACTCAAAACTGTGTTAATTCGTGGACCAGT
GCCAGAGTCTCTGGTTCCGGAATTCATTGCGCTACTTCAGGCCCATGAAG
ACATGATCGAGAAGCTCAAGTCCGTCTCGGGCCTTGTAATGGACCACGTC
ATGATTGCCCACATGTACCTTGTGGCCACACAATGCCCAGACGTGGGGAT
TCGCATACGCGCTATTCGTCTTTTGCGGTCATGGCCACATTACGAGGGCC
TTCACAGCTCCAATGTCACTGCTCTGATGGCGTTGGGTGCGCTCAAAAGG
GACTTTCCCAATGAAGACAAGGCCTTGTCGATGTTGCAGACGACTGACGC
GGAGAATGAATTTCTCGTCGACTCCTTGGAGTCTATCAAGAATGGCGTGG
GAGAACCTACAATTCCGCTTTTCAGGATGTCTGAGTTGCCGTCACGCCCA
TGAATGGCCCAGGTGCAGCTCATCTTATCCAGCAAACACCGGAAGAGCGC
CGGGAAGAGATCTAGGACAGGTTGTCGTACCTGCCGAATCCGACGGATCA
AATGCGATGAATCGCCAGGACAATGCAACAACTGCGTCTCTGCTAACTGG
ACGTGCGACGGATACGATGCGTACCGGTTGCCGCAGCGCCGAGGTCTACA
GGATATAGGCACTCGGCTGGGTTGGATGATGACGTCGGATGAACACCGTT
GTTATTCCTATTTTCAATATCGTTCCGTTACGAATCTGGCCGGGTTCTTC
GACTCCCCACTCTGGCAGCAGTTGGCCCTACAGATGTCTCGCACTGATCC
GGCTGTATTTCATGCGGTGAATATGTTGAGTGCTGCGCACCAGGAGTCGG
AATTGCATAATATGCAGATTTCTGCACGGTCACGCATTGGGAGCCAGCAG
TATTACTTTTCTCTTCAGCAGTCCACGCGGGCCATCGCGCTCCTGAACCA
GCGCCGGAACTCCCAGGATCCCCAGCTGCGCCAAACCATCCTCCTGTGCT
GTCTGCTCTTTGTTCTATTCGATGTGCTTGTCGCGCAGTATGACAGTGCG
TTCACGCATTTACACGGCGGTCTCCGTATTCTAAAAGAACTCGAAATCCA
AGGGAAGCTGGAGTCGGAGGTTGAGCCATCAATAGTTGCCGCATTTCGCC
GCCTGGATACACAGGCCTCTCTCTATGATACTCGGTTTCCGATCCTAAGC
CTGGAGTATGGGAATCAATCCCCGCTTAAGTTGTTCGAAGCACCAACAGG
CGGCTTTACTAGCCTTAGCCAGGTACGAGAGAAAATCACAGTTCTATTCA
CAGCGGGTATACCCTTGGTTGCAAGGAGCTGGAGCCTGAACGGTCCCAAC
ATGGAGACCAACTACGAGTCACTCTACCAAAGTCAACGGCGATTGCTAGA
TGCTTTCGCTGAGTTTGACCTACATTTCACGTCTTTCCGCGTGACAAAAT
ATCATCAGTTAAGCGAGAAGGAGCAATTGGGAGCAGATATCACCTACTTG
CTTTACCTTGGTCACACTCTCACACTCAAAACTGTGTTAATTCGTGGACC
AGTGCCAGAGTCTCTGGTTCCGGAATTCATTGCGCTACTTCAGGCCCATG
AAGACATGATCGAGAAGCTCAAGTCCGTCTCGGGCCTTGTAATGGACCAC
GTCATGATTGCCCACATGTACCTTGTGGCCACACAATGCCCAGACGTGGG
GATTCGCATACGCGCTATTCGTCTTTTGCGGTCATGGCCACATTACGAGG
GCCTTCACAGCTCCAATGTCACTGCTCTGATGGCGTTGGGTGCGCTCAAA
AGGGACTTTCCCAATGAAGACAAGGCCTTGTCGATGTTGCAGACGACTGA
CGCGGAGAATGAATTTCTCGTCGACTCCTTGGAGTCTATCAAGAATGGCG
TGGGAGAACCTACAATTCCGCTTTTCAGGATGTCTGAGTTGCCGTCACGC
CCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004458KJC3_004458Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004458-T1.utr5p1KJC3_004458-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004458-T1.exon1KJC3_004458-T1.exon1Aspergillus niger KJC3exon
KJC3_004458-T1.exon2KJC3_004458-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004458-T1.cdsKJC3_004458-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004458-T1.utr3p1KJC3_004458-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004458-T1KJC3_004458-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR021858
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:5336379..5338174 +
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