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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5419499..5420193- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004489-T1 ID=KJC3_004489-T1|Name=KJC3_004489-T1|organism=Aspergillus niger KJC3|type=mRNA|length=695bp|location=Sequence derived from alignment at ch3:5419499..5420193- (Aspergillus niger KJC3)
CTTCATCCATCTCCTCAATTTATTCCAGCATCGAAAACCATGGCTGAACA
CCCCTCTTTTACTCTGGCTTGCCTGCGTAAGCTCACACCTCTCTAAATGC
GTGAATGACCAGACATAGGCTAAACAATCAATAACCCAACAGTGCCGGTG
GGTGGCATCGCCGGCTACATGCGGACGCGTTCCGCCCCGTCCCTGATCGC
AGGTGTCGGCCTGGGTCTTTCCTACGCCTATGCAGGTACGTAGCAATTCT
ATACAACTTAGGGGATATGAACTGACAACAAGCTTGCAGGCTATTTGATC
AAGGAGAACAAGGACTACGGCACGGAATTGGCCCTGGGAAACAGTGTGGT
CCTCCTCGTCTCCGGTGTCATGCGCTCTATCAAGACCCGCGCTAGGGCTC
CGATCCCCTTGGCTCTGGGTGCGACGGGTCTGTTGGCATCTTTCTACTAC
CAGAAGAAGGTGCGCGAGTTTAGATTTGGTGTTTGAAAGATATTACTGGC
CCCGACAGACATCTCAAATCAGTGCTAGTAATAGCATCGAATTGTACTAT
ATTTTGTATCCTAAACGCATTGTAAAAGTCAGTTTGCCTCTGCCCCACGC
AGCCAGATGTTAGTGATATCCATTCGTTGTGTAAGCGGCATTATTGGATT
ACTAAAAACACGGTCATAGTCATGCAGTAATGGGGTGAATGTCCG back to topCoding sequence (CDS) from alignment at ch3:5419499..5420193- >KJC3_004489-T1 ID=KJC3_004489-T1|Name=KJC3_004489-T1|organism=Aspergillus niger KJC3|type=CDS|length=981bp|location=Sequence derived from alignment at ch3:5419499..5420193- (Aspergillus niger KJC3)
GCTATTTGATCAAGGAGAACAAGGACTACGGCACGGAATTGGCCCTGGGA
AACAGTGTGGTCCTCCTCGTCTCCGGTGTCATGCGCTCTATCAAGACCCG
CGCTAGGGCTCCGATCCCCTTGGCTCTGGGTGCGACGGGTCTGTTGGCAT
CTTTCTACTACCAGAAGAAGGTGCGCGAGTTTAGATTTGGTGTTTGATGC
CGGTGGGTGGCATCGCCGGCTACATGCGGACGCGTTCCGCCCCGTCCCTG
ATCGCAGGTGTCGGCCTGGGTCTTTCCTACGCCTATGCAGATGGCTGAAC
ACCCCTCTTTTACTCTGGCTTGCCTGCGCTATTTGATCAAGGAGAACAAG
GACTACGGCACGGAATTGGCCCTGGGAAACAGTGTGGTCCTCCTCGTCTC
CGGTGTCATGCGCTCTATCAAGACCCGCGCTAGGGCTCCGATCCCCTTGG
CTCTGGGTGCGACGGGTCTGTTGGCATCTTTCTACTACCAGAAGAAGGTG
CGCGAGTTTAGATTTGGTGTTTGATGCCGGTGGGTGGCATCGCCGGCTAC
ATGCGGACGCGTTCCGCCCCGTCCCTGATCGCAGGTGTCGGCCTGGGTCT
TTCCTACGCCTATGCAGATGGCTGAACACCCCTCTTTTACTCTGGCTTGC
CTGCGCTATTTGATCAAGGAGAACAAGGACTACGGCACGGAATTGGCCCT
GGGAAACAGTGTGGTCCTCCTCGTCTCCGGTGTCATGCGCTCTATCAAGA
CCCGCGCTAGGGCTCCGATCCCCTTGGCTCTGGGTGCGACGGGTCTGTTG
GCATCTTTCTACTACCAGAAGAAGGTGCGCGAGTTTAGATTTGGTGTTTG
ATGCCGGTGGGTGGCATCGCCGGCTACATGCGGACGCGTTCCGCCCCGTC
CCTGATCGCAGGTGTCGGCCTGGGTCTTTCCTACGCCTATGCAGATGGCT
GAACACCCCTCTTTTACTCTGGCTTGCCTGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004489-T1.utr5p1 | KJC3_004489-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR005349 |
| DBxref | PFAM:PF03647 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5419499..5420193 - |
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