|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5433327..5434808- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004494-T1 ID=KJC3_004494-T1|Name=KJC3_004494-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1482bp|location=Sequence derived from alignment at ch3:5433327..5434808- (Aspergillus niger KJC3)
CGCAGCCAATCCCTCCTGGCGCCAACCTTGCGCTGACACGAGATGGCTTC
AACTTGCTTTCACAGCTCGCGTCTTTATCTGTCAGGGAAAGAACGCCGAC
AGCCAATCGTATCGGAGCATCTCATTGGCCCGATATTGTGATATATCCAG
CACACCATGACAGATCACTGCTTCAGAGACATACATTCCGGTCATGCCCG
ATTGCTGTCACTCTACGTGGAAAATGTCTCGGATTACACTTTGAGGTCCC
TTTTTTTGTCTCCTCCCGGGAGAGGTTCAGCTCATGCTGATGATCAATCT
CGTATTGCTGCCTCAGTGAGCGGTCTAGACAATCGGCCTGGTCCCGATCG
GTTGGGCTTCAGCTAAACGCTGCTGAGTGATTCAGTACAGAAGAGTATAC
GGTTTGTCGGTTTACGATCCCGTCAAAGAGACCCCTTCTCAAGGACGATG
TGTATATATAGCAGGTTAATTTCCCGGTAGAAGACTTGACACTACTTCCT
AGATAACCTCATCAGTAGCAATCCCAATCGTATCAACATGCGCTTCGCAA
TCACCGCCGCCTCGCTGAGCCTCGTCTCTTCGGCTTTGGCCATCACCATC
ACCCAGCCCACCTCAGGCACCGAGTGGGATTTCTCCACTCCGAAGACTAT
CAAGTTCACCAGCGATGCGAATGATCCGTCAGTGATCAGCATCATCTTGC
GCACTCAGGATGGATCCTTCCAGACCAAGCTGGCGGACAACGTAAAGACT
TCCACGGGGGAATACACTACCCAGCCCAACCCTAGCATTTCCAACGGGTA
CGTACCCTAGATCTTAGTGGACTCACCGATAGTTGAAAGGGGGAACGCTA
CTAACTTTGTGTTTCTGATCCTAGGTCTGACTATGAAATCGAGATCATCG
ACTCTTCGGGCGAGCTCGCTGTGAGCCCGACTTTTACTGTCGAAAAGGGT
GCTTCGACCGATGGTACTACTTCCTCCTCATCAGCTTCTTCCACATCCAC
TACATCTTCTTCCTCTTCCTCTTCTTCTTCCTCCACCACCACTTCCTCCT
CTTCGACATCCAGTGAGACCGAATCCACCACAGTCACCTCTACGACTGCG
GTGTCTTCGACATCTACCTCGTCGAGCAGTCCTCTGTCTTCATCTTCAGG
CAAGATGTCATTTCGTCATTGTGGCACGGCGACCTCACTGACCGAAGCTT
GATTTTTCTACAGGATCGGCCACCTCTACCTCCACGTCTTCGTCGTCTTC
TACGGGCACTACGCTCGCCACATCTGCGTCTTCTACCTCGAGCTCAAACA
GCACTGCCACCACATCCACCGCTCAGCTATCCACCGGCGCGGCTTCGTCT
ACATTTAATGCTCCCCAGGGAGTCGTGGCTCTGCTTGGTGCTGCTTTGGC
GCTTCTCTACGTCTGATTATCAAAATCTATCTCGGGGTCATGTACATGTT
CCTTTTAATCTATGAGTAATGAGAATTGAAAC back to topCoding sequence (CDS) from alignment at ch3:5433327..5434808- >KJC3_004494-T1 ID=KJC3_004494-T1|Name=KJC3_004494-T1|organism=Aspergillus niger KJC3|type=CDS|length=2214bp|location=Sequence derived from alignment at ch3:5433327..5434808- (Aspergillus niger KJC3)
GATCGGCCACCTCTACCTCCACGTCTTCGTCGTCTTCTACGGGCACTACG
CTCGCCACATCTGCGTCTTCTACCTCGAGCTCAAACAGCACTGCCACCAC
ATCCACCGCTCAGCTATCCACCGGCGCGGCTTCGTCTACATTTAATGCTC
CCCAGGGAGTCGTGGCTCTGCTTGGTGCTGCTTTGGCGCTTCTCTACGTC
TGAGTCTGACTATGAAATCGAGATCATCGACTCTTCGGGCGAGCTCGCTG
TGAGCCCGACTTTTACTGTCGAAAAGGGTGCTTCGACCGATGGTACTACT
TCCTCCTCATCAGCTTCTTCCACATCCACTACATCTTCTTCCTCTTCCTC
TTCTTCTTCCTCCACCACCACTTCCTCCTCTTCGACATCCAGTGAGACCG
AATCCACCACAGTCACCTCTACGACTGCGGTGTCTTCGACATCTACCTCG
TCGAGCAGTCCTCTGTCTTCATCTTCAGATGCGCTTCGCAATCACCGCCG
CCTCGCTGAGCCTCGTCTCTTCGGCTTTGGCCATCACCATCACCCAGCCC
ACCTCAGGCACCGAGTGGGATTTCTCCACTCCGAAGACTATCAAGTTCAC
CAGCGATGCGAATGATCCGTCAGTGATCAGCATCATCTTGCGCACTCAGG
ATGGATCCTTCCAGACCAAGCTGGCGGACAACGTAAAGACTTCCACGGGG
GAATACACTACCCAGCCCAACCCTAGCATTTCCAACGGGATCGGCCACCT
CTACCTCCACGTCTTCGTCGTCTTCTACGGGCACTACGCTCGCCACATCT
GCGTCTTCTACCTCGAGCTCAAACAGCACTGCCACCACATCCACCGCTCA
GCTATCCACCGGCGCGGCTTCGTCTACATTTAATGCTCCCCAGGGAGTCG
TGGCTCTGCTTGGTGCTGCTTTGGCGCTTCTCTACGTCTGAGTCTGACTA
TGAAATCGAGATCATCGACTCTTCGGGCGAGCTCGCTGTGAGCCCGACTT
TTACTGTCGAAAAGGGTGCTTCGACCGATGGTACTACTTCCTCCTCATCA
GCTTCTTCCACATCCACTACATCTTCTTCCTCTTCCTCTTCTTCTTCCTC
CACCACCACTTCCTCCTCTTCGACATCCAGTGAGACCGAATCCACCACAG
TCACCTCTACGACTGCGGTGTCTTCGACATCTACCTCGTCGAGCAGTCCT
CTGTCTTCATCTTCAGATGCGCTTCGCAATCACCGCCGCCTCGCTGAGCC
TCGTCTCTTCGGCTTTGGCCATCACCATCACCCAGCCCACCTCAGGCACC
GAGTGGGATTTCTCCACTCCGAAGACTATCAAGTTCACCAGCGATGCGAA
TGATCCGTCAGTGATCAGCATCATCTTGCGCACTCAGGATGGATCCTTCC
AGACCAAGCTGGCGGACAACGTAAAGACTTCCACGGGGGAATACACTACC
CAGCCCAACCCTAGCATTTCCAACGGGATCGGCCACCTCTACCTCCACGT
CTTCGTCGTCTTCTACGGGCACTACGCTCGCCACATCTGCGTCTTCTACC
TCGAGCTCAAACAGCACTGCCACCACATCCACCGCTCAGCTATCCACCGG
CGCGGCTTCGTCTACATTTAATGCTCCCCAGGGAGTCGTGGCTCTGCTTG
GTGCTGCTTTGGCGCTTCTCTACGTCTGAGTCTGACTATGAAATCGAGAT
CATCGACTCTTCGGGCGAGCTCGCTGTGAGCCCGACTTTTACTGTCGAAA
AGGGTGCTTCGACCGATGGTACTACTTCCTCCTCATCAGCTTCTTCCACA
TCCACTACATCTTCTTCCTCTTCCTCTTCTTCTTCCTCCACCACCACTTC
CTCCTCTTCGACATCCAGTGAGACCGAATCCACCACAGTCACCTCTACGA
CTGCGGTGTCTTCGACATCTACCTCGTCGAGCAGTCCTCTGTCTTCATCT
TCAGATGCGCTTCGCAATCACCGCCGCCTCGCTGAGCCTCGTCTCTTCGG
CTTTGGCCATCACCATCACCCAGCCCACCTCAGGCACCGAGTGGGATTTC
TCCACTCCGAAGACTATCAAGTTCACCAGCGATGCGAATGATCCGTCAGT
GATCAGCATCATCTTGCGCACTCAGGATGGATCCTTCCAGACCAAGCTGG
CGGACAACGTAAAGACTTCCACGGGGGAATACACTACCCAGCCCAACCCT
AGCATTTCCAACGG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004494-T1.utr3p1 | KJC3_004494-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004494-T1.utr5p1 | KJC3_004494-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-18) |
| DBxref | InterPro:IPR018466 |
| DBxref | PFAM:PF10342 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5433327..5434808 - |
|
