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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:55902..57033- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004541-T1 ID=KJC3_004541-T1|Name=KJC3_004541-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1132bp|location=Sequence derived from alignment at ch4:55902..57033- (Aspergillus niger KJC3)
CACTAACTAGTTCACTAGTTAACTAACTCTGCCATTCCGCCTTCTTTAGA
TTACTGCCTGGTAGCAGTCCCGACTTCTCATTCCATTTTCATTTTTTTCT
TCTCTTCAATAATATTCACCATAATAACGTCGCAAGCTATTCTAAAGTCA
GAACCTTTCCAATATGTCTCCTGCGACCCTCCCAATCATCGTTATCGTTC
CAGGTGCCTTTGGCACACCCCAAGGCTTCGAGAAATTGCTGCCGCATCTC
ACCGAAGCCGGATACGCAACACACCCAGGATCATACCCCAGTTGCAACCC
CTCTGATCCGGCCAATGTGTCTTCCCCCCAGGATATCGCTCACTTGCGTG
ACAATGTGCTACTCCCTCTCTTGAACGAAGAAGGAAAAGATGTCGTTATC
ATCGCACACTCATACGGGGGTGTTGTTGCAGGTGGCGCAGCAAGAGGACT
TGCAAAGGGCACCAGAACAGCCCAAGGTCAATCGACTGGCGTGATTGGCC
TTATTTACGTGGTGGGCAACATCACACTCGATGGTGAATCTCTGTTCAAT
GCGGTAGGCGGTGCTTACCCCCCATTTATCAAAGTCGACAAGGTACGGTC
TACCCAGAACAATCGCAGTAATAATGATAGAATATTAATAATTTTGTCCC
CAGCCATCTAAGGGCCTGGCTATCATTGAACCGGCGATGGACGTTTTGTA
CAATGACTGCGACCGTTCCCTTCAGCCGGAATTGGATAGACTAATGCAGC
CACATGCACTCCGAGCTTTTGAAACTACCGCCACTGCCCCAGCGTGGGCG
GAGAGTGCGTTTGATGGTAGGAGAGCATATGTGCGTACTTTGGACGACTG
TTGCAACCCTTCATCGTTGCAGGATATGTGGCTGGAGAAGTCCAAGGTTG
AATGGGAAGTTGTGGATTTCAAGACCGGACACATGCCATTTGTGAGCCAG
CCTCAGGCTTTGGCGGAGCAGGTTACCAAGTTCATTGATGGTTTTATGGC
AAAGTAAATAGTTTATACAGAGTCTACCACGTGATGTAGGCTTCGCAACA
CACACCAATCACGTTTACCCGCTCCATGAGTTATCGCCAACTGACACCAT
TCCAATGCATACGGCCTGGCCAACATCAAATC back to topCoding sequence (CDS) from alignment at ch4:55902..57033- >KJC3_004541-T1 ID=KJC3_004541-T1|Name=KJC3_004541-T1|organism=Aspergillus niger KJC3|type=CDS|length=1566bp|location=Sequence derived from alignment at ch4:55902..57033- (Aspergillus niger KJC3)
CCATCTAAGGGCCTGGCTATCATTGAACCGGCGATGGACGTTTTGTACAA
TGACTGCGACCGTTCCCTTCAGCCGGAATTGGATAGACTAATGCAGCCAC
ATGCACTCCGAGCTTTTGAAACTACCGCCACTGCCCCAGCGTGGGCGGAG
AGTGCGTTTGATGGTAGGAGAGCATATGTGCGTACTTTGGACGACTGTTG
CAACCCTTCATCGTTGCAGGATATGTGGCTGGAGAAGTCCAAGGTTGAAT
GGGAAGTTGTGGATTTCAAGACCGGACACATGCCATTTGTGAGCCAGCCT
CAGGCTTTGGCGGAGCAGGTTACCAAGTTCATTGATGGTTTTATGGCAAA
GTAAATGTCTCCTGCGACCCTCCCAATCATCGTTATCGTTCCAGGTGCCT
TTGGCACACCCCAAGGCTTCGAGAAATTGCTGCCGCATCTCACCGAAGCC
GGATACGCAACACACCCAGGATCATACCCCAGTTGCAACCCCTCTGATCC
GGCCAATGTGTCTTCCCCCCAGGATATCGCTCACTTGCGTGACAATGTGC
TACTCCCTCTCTTGAACGAAGAAGGAAAAGATGTCGTTATCATCGCACAC
TCATACGGGGGTGTTGTTGCAGGTGGCGCAGCAAGAGGACTTGCAAAGGG
CACCAGAACAGCCCAAGGTCAATCGACTGGCGTGATTGGCCTTATTTACG
TGGTGGGCAACATCACACTCGATGGTGAATCTCTGTTCAATGCGGTAGGC
GGTGCTTACCCCCCATTTATCAAAGTCGACAAGCCATCTAAGGGCCTGGC
TATCATTGAACCGGCGATGGACGTTTTGTACAATGACTGCGACCGTTCCC
TTCAGCCGGAATTGGATAGACTAATGCAGCCACATGCACTCCGAGCTTTT
GAAACTACCGCCACTGCCCCAGCGTGGGCGGAGAGTGCGTTTGATGGTAG
GAGAGCATATGTGCGTACTTTGGACGACTGTTGCAACCCTTCATCGTTGC
AGGATATGTGGCTGGAGAAGTCCAAGGTTGAATGGGAAGTTGTGGATTTC
AAGACCGGACACATGCCATTTGTGAGCCAGCCTCAGGCTTTGGCGGAGCA
GGTTACCAAGTTCATTGATGGTTTTATGGCAAAGTAAATGTCTCCTGCGA
CCCTCCCAATCATCGTTATCGTTCCAGGTGCCTTTGGCACACCCCAAGGC
TTCGAGAAATTGCTGCCGCATCTCACCGAAGCCGGATACGCAACACACCC
AGGATCATACCCCAGTTGCAACCCCTCTGATCCGGCCAATGTGTCTTCCC
CCCAGGATATCGCTCACTTGCGTGACAATGTGCTACTCCCTCTCTTGAAC
GAAGAAGGAAAAGATGTCGTTATCATCGCACACTCATACGGGGGTGTTGT
TGCAGGTGGCGCAGCAAGAGGACTTGCAAAGGGCACCAGAACAGCCCAAG
GTCAATCGACTGGCGTGATTGGCCTTATTTACGTGGTGGGCAACATCACA
CTCGATGGTGAATCTCTGTTCAATGCGGTAGGCGGTGCTTACCCCCCATT
TATCAAAGTCGACAAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004541-T1.utr3p1 | KJC3_004541-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004541-T1.utr5p1 | KJC3_004541-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000073 |
| DBxref | InterPro:IPR029058 |
| DBxref | PFAM:PF12697 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:55902..57033 - |
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