You are here

Home

KJC3_004558-T2, KJC3_004558-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004558-T2
Unique NameKJC3_004558-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:97292..98732+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004558-T2 ID=KJC3_004558-T2|Name=KJC3_004558-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1441bp|location=Sequence derived from alignment at ch4:97292..98732+ (Aspergillus niger KJC3)
GTCCGATGTAAAAGTCCCACGGTACATTTCTGCTATCCTGGCAAGATCAG
CTCCTGCTCGGGGATTGCGGACCTGTGCAATATTGCAAACCTTATGTCCC
GGATTTAACGAGTCAGGTCATTTAACTCCGACCAGTGGCACAAGCGCGGG
AGGTATGGCACACGGAGGAAACGGAGACAAGCATGGAGAGAGGCAAAGGA
TATGAAGATAAATATTTTGGAGGGACGGCAGGTTAAATACTGGGAGCTAT
ATATATTGTCGTGCTCTCATTTATCCGATTTCGTTTGCATTGAGCGAATA
GAGCTGTGTCCACAATACGCACGATGGCATCCTACCTAGTTACCGGCAGC
ACTCGTGGAATCGGCTTCGAATTGGTCCGCCAATTATCAGAAAAGTCCCC
CTCAGAAGTCAGTACCATCATTGCCACCTCCCGATCGGTCAATGCCTCCC
TGCAGGACCTAGCAGACCGGCATCCCGGCCGGGTCGTGCTTGTTCCCTTG
GATGTTACGGTCCCCGAGTCCATCCAGAAGGCCGCCCAGACCGTGGAGAG
CATCATGGGCGACAAGGGACTTGATGTGCTCATTAACAATGCCGGCATCG
TGGGTTGGGGCCAGATTAAGGACATGTTCGTTTCAATCCATGGATGACTT
AAAACTGCTGATGGAAGCTAACGTCCACCAGGGCGGACCTGGAAGACACT
TTCCGGGTCAACGTGACCGGTCCACATATCATCACCCAGAACTTTTTGCC
GGTATTGCGAAAGGGCTCTATGAAGAAGATCGTCAACATGTAATGCCTCT
TGACCCGAAACCGACCGTGTTGAAGCCTGACTCGCATCCTCCAGTTCCAG
CAGCGTCGGCTCCATTGCAAAGCAGTCCGTTTACCGGGAGCTGCCTGCCC
CCTCCTATAAAATCACCAAGGCCGCCTTGAATATGATGACGGTGCTATAC
TCCCAAGAGCTTGAGATCGAGGGGTTCACCGTATTCTGCGTGAGTCCGGG
GGTGAGTGCCAATTTAGACCTCAAGCCAATCCCGACATATTTCTGATCTC
AACGTTAGTGGTTGAAGACAGACGAAGCCAATGCTCATGCCGATCTTCCG
GTCGGAACTGGAGTCGAGCGCGTTTTGGAGATGATCCGTGATAGGGGGGT
GGAAGTCAATGGAAGATTTTTAAATATTCATGTTCCTGGGTGGGAGAATA
ACCCTGGTTTAAACCAGTATGATGGAAAGGAGCTGCCATGGTAGACGGGG
CAGATGGATGACGATCGGCGGTGGGAGATGTACTAATCCATGTATGGCTT
ACGATCAAAGACCGATGAGTTGAAGATGCAGTAACAGGAACTCTAAACTG
ACTCGGTGGGAGAGACTATGACGCGATGCGTACTATTTTGCTATTTTTGT
GCAACTCTCGGCCTACTGAACGAGAGGCAGGTTGCCTGAGC
back to top

Coding sequence (CDS) from alignment at ch4:97292..98732+

>KJC3_004558-T2 ID=KJC3_004558-T2|Name=KJC3_004558-T2|organism=Aspergillus niger KJC3|type=CDS|length=1836bp|location=Sequence derived from alignment at ch4:97292..98732+ (Aspergillus niger KJC3)
ATGGCATCCTACCTAGTTACCGGCAGCACTCGTGGAATCGGCTTCGAATT
GGTCCGCCAATTATCAGAAAAGTCCCCCTCAGAAGTCAGTACCATCATTG
CCACCTCCCGATCGGTCAATGCCTCCCTGCAGGACCTAGCAGACCGGCAT
CCCGGCCGGGTCGTGCTTGTTCCCTTGGATGTTACGGTCCCCGAGTCCAT
CCAGAAGGCCGCCCAGACCGTGGAGAGCATCATGGGCGACAAGGGACTTG
ATGTGCTCATTAACAATGCCGGCATCGTGGGTTGGGGCCAGATTAAGGAC
ATGGCGGACCTGGAAGACACTTTCCGGGTCAACGTGACCGGTCCACATAT
CATCACCCAGAACTTTTTGCCGGTATTGCGAAAGGGCTCTATGAAGAAGA
TCGTCAACATTTCCAGCAGCGTCGGCTCCATTGCAAAGCAGTCCGTTTAC
CGGGAGCTGCCTGCCCCCTCCTATAAAATCACCAAGGCCGCCTTGAATAT
GATGACGGTGCTATACTCCCAAGAGCTTGAGATCGAGGGGTTCACCGTAT
TCTGCGTGAGTCCGGGGGTGAGTGCCAATTTAGACCTCAAGCCAATCCCG
ACATATTTCTGAATGGCATCCTACCTAGTTACCGGCAGCACTCGTGGAAT
CGGCTTCGAATTGGTCCGCCAATTATCAGAAAAGTCCCCCTCAGAAGTCA
GTACCATCATTGCCACCTCCCGATCGGTCAATGCCTCCCTGCAGGACCTA
GCAGACCGGCATCCCGGCCGGGTCGTGCTTGTTCCCTTGGATGTTACGGT
CCCCGAGTCCATCCAGAAGGCCGCCCAGACCGTGGAGAGCATCATGGGCG
ACAAGGGACTTGATGTGCTCATTAACAATGCCGGCATCGTGGGTTGGGGC
CAGATTAAGGACATGGCGGACCTGGAAGACACTTTCCGGGTCAACGTGAC
CGGTCCACATATCATCACCCAGAACTTTTTGCCGGTATTGCGAAAGGGCT
CTATGAAGAAGATCGTCAACATTTCCAGCAGCGTCGGCTCCATTGCAAAG
CAGTCCGTTTACCGGGAGCTGCCTGCCCCCTCCTATAAAATCACCAAGGC
CGCCTTGAATATGATGACGGTGCTATACTCCCAAGAGCTTGAGATCGAGG
GGTTCACCGTATTCTGCGTGAGTCCGGGGGTGAGTGCCAATTTAGACCTC
AAGCCAATCCCGACATATTTCTGAATGGCATCCTACCTAGTTACCGGCAG
CACTCGTGGAATCGGCTTCGAATTGGTCCGCCAATTATCAGAAAAGTCCC
CCTCAGAAGTCAGTACCATCATTGCCACCTCCCGATCGGTCAATGCCTCC
CTGCAGGACCTAGCAGACCGGCATCCCGGCCGGGTCGTGCTTGTTCCCTT
GGATGTTACGGTCCCCGAGTCCATCCAGAAGGCCGCCCAGACCGTGGAGA
GCATCATGGGCGACAAGGGACTTGATGTGCTCATTAACAATGCCGGCATC
GTGGGTTGGGGCCAGATTAAGGACATGGCGGACCTGGAAGACACTTTCCG
GGTCAACGTGACCGGTCCACATATCATCACCCAGAACTTTTTGCCGGTAT
TGCGAAAGGGCTCTATGAAGAAGATCGTCAACATTTCCAGCAGCGTCGGC
TCCATTGCAAAGCAGTCCGTTTACCGGGAGCTGCCTGCCCCCTCCTATAA
AATCACCAAGGCCGCCTTGAATATGATGACGGTGCTATACTCCCAAGAGC
TTGAGATCGAGGGGTTCACCGTATTCTGCGTGAGTCCGGGGGTGAGTGCC
AATTTAGACCTCAAGCCAATCCCGACATATTTCTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004558KJC3_004558Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004558-T2KJC3_004558-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004558-T2.utr5p1KJC3_004558-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004558-T2.exon1KJC3_004558-T2.exon1Aspergillus niger KJC3exon
KJC3_004558-T2.exon2KJC3_004558-T2.exon2Aspergillus niger KJC3exon
KJC3_004558-T2.exon3KJC3_004558-T2.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004558-T2.cdsKJC3_004558-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004558-T2.utr3p1KJC3_004558-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF08659
DBxrefPFAM:PF01370
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:97292..98732 +
Powered by Drupal