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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:167580..170349- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004588-T1 ID=KJC3_004588-T1|Name=KJC3_004588-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2770bp|location=Sequence derived from alignment at ch4:167580..170349- (Aspergillus niger KJC3)
CCAGATTCTGTTCGATTACCCTTTCTTTCCGTTTTCGTTGATAATGCCCT
GCTCTGAGTGACATGACTTCCTCCAAGCAATCAGGCCGCCGGACTCGTCG
CAGTCATGCCCTGGGAGCCTGCAGAACGTGTCGAAGGCGTCATGCCAAAT
GCGACCAAAAGAGGCCTACCTGCCAGATGTGTCGGGCAACAGGTGTGGTA
TGTGAGGGGTTCGTTGATGAGATCCGATGGATGTCCGATCGGAAGTCCCA
GCCTTCTTCGGGGACAACAGCTAAGAAGGCAAATGATCCGGAGAAGCAGG
GGCCTCGACGCCATCTCTACACAGGTTGATCACCCTCTCTCATACATCGA
TGATCTGATCACCGGCTTCAAAATGGTAAAGCTAATGTATAGACATTAGA
AAAGTCGAGAGTCTCCATGAGCGATGCATTGAGTGCAGACTTGGTGTCGG
GCTCTATTGATGCCTCATTGGCTGAGATCGAAACAAGATCCCGGGATACG
GAGAGGCCCTCACAGGGCGATATTGTAGTTGGACCATTTGCTGTGCTGGA
CTTTAGCCTTACCGAACCCAAATCTGCAAGTCGGGCTCATCCCACTGACG
AGACTACGGTCGCAAATGATGTGATTCTACCGTCGGGGGATACCCTGGCT
GAAGGCGCTTCCGGAGTCAGTCCAGCTCTGTCGCAAGAGTCGATCGCCTA
CATGAATGACCTGCTGCAGTGGTCAGATATTCTTAGCTTGGATCCTCAGT
TGCAGAGTGCTACACTATCTGGCACATTCGACCTGGGCGATTGGTTGCCC
CTGGATTTGGGGACACAAGCCCCTATGCTGGAACATAATCTCCTTGGCGA
AGCTCCTAGTCTGATGGATGATACAGCAGCTCTCTACCATTGTGTCCCTG
GGCAAGACAATGCCTCCAAGATGGTGCCGCCGGTTGATAGCAATCCACCT
GATGTACTAGCAGATGCTCATTACCTACTACGACATTTCCAGGATCATGT
CATTTCGCGTATGATGGCCGTTCCTCTAGACCAGAAGTCACCTTGGAAGA
TACTCAATGTGCCATCTGCTGTTGTAACATATAGCGATATCACTTTTCTG
GGGTCGCAAAACATCACTCATGCTCGATTAGCCAATCTGTACTGCCTCTT
GGCCTGTTCAGCCCTCCATTTAACGGTAAACCCTTCCATGAGGACCTCGG
ACTCAACAGAACGATGGAAGCCGGTAGCGGAATATGCTTACCATCTGGCA
AAAGATCACATGCAGATGTCTCTGAAGCATGAAACACAAGAGCCAAAGAA
GGCCAAATACAAGGACCAGCTCATGGCAATTTGCGCCTTGACTGAATTTG
CTGTATGATTCCTGTCTAACTTTGTTCGAGGTAGCTTACTGAGGGAAACA
GATCCTAAGTAGTCAGCAGCAGGATGCAAGATGCTATATGATCGATGCTG
AGCGGCTGCTCCGCCTCCGAGGGTTGCCTAAACAACGGATTTCTCAAAAA
GCACGCCTCCTACACCACACATATACGTGGCTACGAATTGTAGGTGAGAG
CACCTACGCTTTGCACAACTACACGCCCTCGGATGCCTTTATGGAGGCTC
TCAAATATCGGTTTCGGTACCAGAAAGTCGAAAATACTCAAGCAGCTGGG
TACCGAACATCACGCTTGGACGACTTTTTGCGCCTCGATCGGCGCCCGTC
CGATAGCGACCTGGACATTGATGAGCCGAAGGAGGACGACGTTGGCCTAT
ATGATATTCATTTGCAGGATTCGCGCAAGTATCCTGCCACACTATATAGC
CAGATTTACGGGGTATCGGAGACGTGGCTCAGCTTGGTATCTCAAACAAC
ACGCCTGGCCAATGTAATGGAAACCTTTCGAGTTGCGCGCGAAATGCGTC
AAGGGAATAATGCAAGTCTCGAAGCATGGGAAGCATTGCATCGGCGCAGT
GCTCGTCTCGAGAGCATGGTGTGCACATTCGCGTCCAGGAGAACAGAGGA
CAACATATGCGATTCGACCAACATATTGGCCAAGTCACATGGATGCCTTT
TACAGGCTTTAAATTCTGCGCTGGTTATCTTCTTCTATAGACGCATCCGT
CAGGTCCACCCGGCTATTTTGGAGAGCCAGGTGGACAAGGTGATCTCATC
GTTGAACGAGTTTGATGTAGCACTAGTGGAAGCAGATCACACCGGCCCAG
GTACAGTCTGGCCTCTTTTCATTGCTGGGTGCGAGGCGACGACGCCCGAA
AGGCGGCAATCGATCACACTGCTGCTAGACAAAGGCGAAGCACGATGTGG
ATTTTCTGCCTATCATACTGTCCGGGACGTCATGAACCAGGTATGGGACA
AACAAGATGCGCACTTTACACGAAGCAGAGGAGAGACTTTTCCGACCTGG
CTTGATGTTGTCAAAAGCAAGCAAATATGGCCCATTCTAGCATGATGACC
GCCGGGGTCTGTTACAAGGCGCTACAAGAGATACGATGACATGTCCTCAT
AAATTTATTTTTCTATATCCAATGGCGACTATTTCATGACGAACGCTTGA
CAACATTAACATTCGCATTCACCATCAACTGGGCCAGCTCGCTCTGGAGA
TCATCCTTCAAGAGGGCGAATGGCTTCCGCAACCCACCAGTGGCCTGTCC
CCTCAGCTCCACGCCTGTCTTGACCGCTGCAGCGTAATTGTGCGACTCAA
GGAACTTGCAGATCGGCCATGCCTTGGCCCACAGTTCCCGACCCTTCTTG
AGGTCTCCTTCAACCGAAAC back to topCoding sequence (CDS) from alignment at ch4:167580..170349- >KJC3_004588-T1 ID=KJC3_004588-T1|Name=KJC3_004588-T1|organism=Aspergillus niger KJC3|type=CDS|length=6777bp|location=Sequence derived from alignment at ch4:167580..170349- (Aspergillus niger KJC3)
ATCCTAAGTAGTCAGCAGCAGGATGCAAGATGCTATATGATCGATGCTGA
GCGGCTGCTCCGCCTCCGAGGGTTGCCTAAACAACGGATTTCTCAAAAAG
CACGCCTCCTACACCACACATATACGTGGCTACGAATTGTAGGTGAGAGC
ACCTACGCTTTGCACAACTACACGCCCTCGGATGCCTTTATGGAGGCTCT
CAAATATCGGTTTCGGTACCAGAAAGTCGAAAATACTCAAGCAGCTGGGT
ACCGAACATCACGCTTGGACGACTTTTTGCGCCTCGATCGGCGCCCGTCC
GATAGCGACCTGGACATTGATGAGCCGAAGGAGGACGACGTTGGCCTATA
TGATATTCATTTGCAGGATTCGCGCAAGTATCCTGCCACACTATATAGCC
AGATTTACGGGGTATCGGAGACGTGGCTCAGCTTGGTATCTCAAACAACA
CGCCTGGCCAATGTAATGGAAACCTTTCGAGTTGCGCGCGAAATGCGTCA
AGGGAATAATGCAAGTCTCGAAGCATGGGAAGCATTGCATCGGCGCAGTG
CTCGTCTCGAGAGCATGGTGTGCACATTCGCGTCCAGGAGAACAGAGGAC
AACATATGCGATTCGACCAACATATTGGCCAAGTCACATGGATGCCTTTT
ACAGGCTTTAAATTCTGCGCTGGTTATCTTCTTCTATAGACGCATCCGTC
AGGTCCACCCGGCTATTTTGGAGAGCCAGGTGGACAAGGTGATCTCATCG
TTGAACGAGTTTGATGTAGCACTAGTGGAAGCAGATCACACCGGCCCAGG
TACAGTCTGGCCTCTTTTCATTGCTGGGTGCGAGGCGACGACGCCCGAAA
GGCGGCAATCGATCACACTGCTGCTAGACAAAGGCGAAGCACGATGTGGA
TTTTCTGCCTATCATACTGTCCGGGACGTCATGAACCAGGTATGGGACAA
ACAAGATGCGCACTTTACACGAAGCAGAGGAGAGACTTTTCCGACCTGGC
TTGATGTTGTCAAAAGCAAGCAAATATGGCCCATTCTAGCATGAAAAAGT
CGAGAGTCTCCATGAGCGATGCATTGAGTGCAGACTTGGTGTCGGGCTCT
ATTGATGCCTCATTGGCTGAGATCGAAACAAGATCCCGGGATACGGAGAG
GCCCTCACAGGGCGATATTGTAGTTGGACCATTTGCTGTGCTGGACTTTA
GCCTTACCGAACCCAAATCTGCAAGTCGGGCTCATCCCACTGACGAGACT
ACGGTCGCAAATGATGTGATTCTACCGTCGGGGGATACCCTGGCTGAAGG
CGCTTCCGGAGTCAGTCCAGCTCTGTCGCAAGAGTCGATCGCCTACATGA
ATGACCTGCTGCAGTGGTCAGATATTCTTAGCTTGGATCCTCAGTTGCAG
AGTGCTACACTATCTGGCACATTCGACCTGGGCGATTGGTTGCCCCTGGA
TTTGGGGACACAAGCCCCTATGCTGGAACATAATCTCCTTGGCGAAGCTC
CTAGTCTGATGGATGATACAGCAGCTCTCTACCATTGTGTCCCTGGGCAA
GACAATGCCTCCAAGATGGTGCCGCCGGTTGATAGCAATCCACCTGATGT
ACTAGCAGATGCTCATTACCTACTACGACATTTCCAGGATCATGTCATTT
CGCGTATGATGGCCGTTCCTCTAGACCAGAAGTCACCTTGGAAGATACTC
AATGTGCCATCTGCTGTTGTAACATATAGCGATATCACTTTTCTGGGGTC
GCAAAACATCACTCATGCTCGATTAGCCAATCTGTACTGCCTCTTGGCCT
GTTCAGCCCTCCATTTAACGGTAAACCCTTCCATGAGGACCTCGGACTCA
ACAGAACGATGGAAGCCGGTAGCGGAATATGCTTACCATCTGGCAAAAGA
TCACATGCAGATGTCTCTGAAGCATGAAACACAAGAGCCAAAGAAGGCCA
AATACAAGGACCAGCTCATGGCAATTTGCGCCTTGACTGAATTTGCTATG
ACTTCCTCCAAGCAATCAGGCCGCCGGACTCGTCGCAGTCATGCCCTGGG
AGCCTGCAGAACGTGTCGAAGGCGTCATGCCAAATGCGACCAAAAGAGGC
CTACCTGCCAGATGTGTCGGGCAACAGGTGTGGTATGTGAGGGGTTCGTT
GATGAGATCCGATGGATGTCCGATCGGAAGTCCCAGCCTTCTTCGGGGAC
AACAGCTAAGAAGGCAAATGATCCGGAGAAGCAGGGGCCTCGACGCCATC
TCTACACAGATCCTAAGTAGTCAGCAGCAGGATGCAAGATGCTATATGAT
CGATGCTGAGCGGCTGCTCCGCCTCCGAGGGTTGCCTAAACAACGGATTT
CTCAAAAAGCACGCCTCCTACACCACACATATACGTGGCTACGAATTGTA
GGTGAGAGCACCTACGCTTTGCACAACTACACGCCCTCGGATGCCTTTAT
GGAGGCTCTCAAATATCGGTTTCGGTACCAGAAAGTCGAAAATACTCAAG
CAGCTGGGTACCGAACATCACGCTTGGACGACTTTTTGCGCCTCGATCGG
CGCCCGTCCGATAGCGACCTGGACATTGATGAGCCGAAGGAGGACGACGT
TGGCCTATATGATATTCATTTGCAGGATTCGCGCAAGTATCCTGCCACAC
TATATAGCCAGATTTACGGGGTATCGGAGACGTGGCTCAGCTTGGTATCT
CAAACAACACGCCTGGCCAATGTAATGGAAACCTTTCGAGTTGCGCGCGA
AATGCGTCAAGGGAATAATGCAAGTCTCGAAGCATGGGAAGCATTGCATC
GGCGCAGTGCTCGTCTCGAGAGCATGGTGTGCACATTCGCGTCCAGGAGA
ACAGAGGACAACATATGCGATTCGACCAACATATTGGCCAAGTCACATGG
ATGCCTTTTACAGGCTTTAAATTCTGCGCTGGTTATCTTCTTCTATAGAC
GCATCCGTCAGGTCCACCCGGCTATTTTGGAGAGCCAGGTGGACAAGGTG
ATCTCATCGTTGAACGAGTTTGATGTAGCACTAGTGGAAGCAGATCACAC
CGGCCCAGGTACAGTCTGGCCTCTTTTCATTGCTGGGTGCGAGGCGACGA
CGCCCGAAAGGCGGCAATCGATCACACTGCTGCTAGACAAAGGCGAAGCA
CGATGTGGATTTTCTGCCTATCATACTGTCCGGGACGTCATGAACCAGGT
ATGGGACAAACAAGATGCGCACTTTACACGAAGCAGAGGAGAGACTTTTC
CGACCTGGCTTGATGTTGTCAAAAGCAAGCAAATATGGCCCATTCTAGCA
TGAAAAAGTCGAGAGTCTCCATGAGCGATGCATTGAGTGCAGACTTGGTG
TCGGGCTCTATTGATGCCTCATTGGCTGAGATCGAAACAAGATCCCGGGA
TACGGAGAGGCCCTCACAGGGCGATATTGTAGTTGGACCATTTGCTGTGC
TGGACTTTAGCCTTACCGAACCCAAATCTGCAAGTCGGGCTCATCCCACT
GACGAGACTACGGTCGCAAATGATGTGATTCTACCGTCGGGGGATACCCT
GGCTGAAGGCGCTTCCGGAGTCAGTCCAGCTCTGTCGCAAGAGTCGATCG
CCTACATGAATGACCTGCTGCAGTGGTCAGATATTCTTAGCTTGGATCCT
CAGTTGCAGAGTGCTACACTATCTGGCACATTCGACCTGGGCGATTGGTT
GCCCCTGGATTTGGGGACACAAGCCCCTATGCTGGAACATAATCTCCTTG
GCGAAGCTCCTAGTCTGATGGATGATACAGCAGCTCTCTACCATTGTGTC
CCTGGGCAAGACAATGCCTCCAAGATGGTGCCGCCGGTTGATAGCAATCC
ACCTGATGTACTAGCAGATGCTCATTACCTACTACGACATTTCCAGGATC
ATGTCATTTCGCGTATGATGGCCGTTCCTCTAGACCAGAAGTCACCTTGG
AAGATACTCAATGTGCCATCTGCTGTTGTAACATATAGCGATATCACTTT
TCTGGGGTCGCAAAACATCACTCATGCTCGATTAGCCAATCTGTACTGCC
TCTTGGCCTGTTCAGCCCTCCATTTAACGGTAAACCCTTCCATGAGGACC
TCGGACTCAACAGAACGATGGAAGCCGGTAGCGGAATATGCTTACCATCT
GGCAAAAGATCACATGCAGATGTCTCTGAAGCATGAAACACAAGAGCCAA
AGAAGGCCAAATACAAGGACCAGCTCATGGCAATTTGCGCCTTGACTGAA
TTTGCTATGACTTCCTCCAAGCAATCAGGCCGCCGGACTCGTCGCAGTCA
TGCCCTGGGAGCCTGCAGAACGTGTCGAAGGCGTCATGCCAAATGCGACC
AAAAGAGGCCTACCTGCCAGATGTGTCGGGCAACAGGTGTGGTATGTGAG
GGGTTCGTTGATGAGATCCGATGGATGTCCGATCGGAAGTCCCAGCCTTC
TTCGGGGACAACAGCTAAGAAGGCAAATGATCCGGAGAAGCAGGGGCCTC
GACGCCATCTCTACACAGATCCTAAGTAGTCAGCAGCAGGATGCAAGATG
CTATATGATCGATGCTGAGCGGCTGCTCCGCCTCCGAGGGTTGCCTAAAC
AACGGATTTCTCAAAAAGCACGCCTCCTACACCACACATATACGTGGCTA
CGAATTGTAGGTGAGAGCACCTACGCTTTGCACAACTACACGCCCTCGGA
TGCCTTTATGGAGGCTCTCAAATATCGGTTTCGGTACCAGAAAGTCGAAA
ATACTCAAGCAGCTGGGTACCGAACATCACGCTTGGACGACTTTTTGCGC
CTCGATCGGCGCCCGTCCGATAGCGACCTGGACATTGATGAGCCGAAGGA
GGACGACGTTGGCCTATATGATATTCATTTGCAGGATTCGCGCAAGTATC
CTGCCACACTATATAGCCAGATTTACGGGGTATCGGAGACGTGGCTCAGC
TTGGTATCTCAAACAACACGCCTGGCCAATGTAATGGAAACCTTTCGAGT
TGCGCGCGAAATGCGTCAAGGGAATAATGCAAGTCTCGAAGCATGGGAAG
CATTGCATCGGCGCAGTGCTCGTCTCGAGAGCATGGTGTGCACATTCGCG
TCCAGGAGAACAGAGGACAACATATGCGATTCGACCAACATATTGGCCAA
GTCACATGGATGCCTTTTACAGGCTTTAAATTCTGCGCTGGTTATCTTCT
TCTATAGACGCATCCGTCAGGTCCACCCGGCTATTTTGGAGAGCCAGGTG
GACAAGGTGATCTCATCGTTGAACGAGTTTGATGTAGCACTAGTGGAAGC
AGATCACACCGGCCCAGGTACAGTCTGGCCTCTTTTCATTGCTGGGTGCG
AGGCGACGACGCCCGAAAGGCGGCAATCGATCACACTGCTGCTAGACAAA
GGCGAAGCACGATGTGGATTTTCTGCCTATCATACTGTCCGGGACGTCAT
GAACCAGGTATGGGACAAACAAGATGCGCACTTTACACGAAGCAGAGGAG
AGACTTTTCCGACCTGGCTTGATGTTGTCAAAAGCAAGCAAATATGGCCC
ATTCTAGCATGAAAAAGTCGAGAGTCTCCATGAGCGATGCATTGAGTGCA
GACTTGGTGTCGGGCTCTATTGATGCCTCATTGGCTGAGATCGAAACAAG
ATCCCGGGATACGGAGAGGCCCTCACAGGGCGATATTGTAGTTGGACCAT
TTGCTGTGCTGGACTTTAGCCTTACCGAACCCAAATCTGCAAGTCGGGCT
CATCCCACTGACGAGACTACGGTCGCAAATGATGTGATTCTACCGTCGGG
GGATACCCTGGCTGAAGGCGCTTCCGGAGTCAGTCCAGCTCTGTCGCAAG
AGTCGATCGCCTACATGAATGACCTGCTGCAGTGGTCAGATATTCTTAGC
TTGGATCCTCAGTTGCAGAGTGCTACACTATCTGGCACATTCGACCTGGG
CGATTGGTTGCCCCTGGATTTGGGGACACAAGCCCCTATGCTGGAACATA
ATCTCCTTGGCGAAGCTCCTAGTCTGATGGATGATACAGCAGCTCTCTAC
CATTGTGTCCCTGGGCAAGACAATGCCTCCAAGATGGTGCCGCCGGTTGA
TAGCAATCCACCTGATGTACTAGCAGATGCTCATTACCTACTACGACATT
TCCAGGATCATGTCATTTCGCGTATGATGGCCGTTCCTCTAGACCAGAAG
TCACCTTGGAAGATACTCAATGTGCCATCTGCTGTTGTAACATATAGCGA
TATCACTTTTCTGGGGTCGCAAAACATCACTCATGCTCGATTAGCCAATC
TGTACTGCCTCTTGGCCTGTTCAGCCCTCCATTTAACGGTAAACCCTTCC
ATGAGGACCTCGGACTCAACAGAACGATGGAAGCCGGTAGCGGAATATGC
TTACCATCTGGCAAAAGATCACATGCAGATGTCTCTGAAGCATGAAACAC
AAGAGCCAAAGAAGGCCAAATACAAGGACCAGCTCATGGCAATTTGCGCC
TTGACTGAATTTGCTATGACTTCCTCCAAGCAATCAGGCCGCCGGACTCG
TCGCAGTCATGCCCTGGGAGCCTGCAGAACGTGTCGAAGGCGTCATGCCA
AATGCGACCAAAAGAGGCCTACCTGCCAGATGTGTCGGGCAACAGGTGTG
GTATGTGAGGGGTTCGTTGATGAGATCCGATGGATGTCCGATCGGAAGTC
CCAGCCTTCTTCGGGGACAACAGCTAAGAAGGCAAATGATCCGGAGAAGC
AGGGGCCTCGACGCCATCTCTACACAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004588-T1.utr3p1 | KJC3_004588-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004588-T1.utr5p1 | KJC3_004588-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.3 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:167580..170349 - |
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