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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:185568..186857- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004596-T1 ID=KJC3_004596-T1|Name=KJC3_004596-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1290bp|location=Sequence derived from alignment at ch4:185568..186857- (Aspergillus niger KJC3)
GAAAACTTAATTATTTGACCTTTGGGTCAAGGCGGTTAGGGTGTGGCGGA
CCGCTCGATCTCTCGGCAGACCCACACGTATTCGTATACAGCATGGCTTG
AAGGGTTCCAGGGTCCAATGCAACGATTCTGATATCCTTATATTTATCTC
GTCTCATCTAGCCCTGCAGTCTCCATTCATTCAGTCTCTCCTTCCATTTC
TTACCATCCTATACTCAAGATGGCCTCCCAAAATGACTCCAGTGTATCCT
TCGTTCTCTATCGATACACCCCGTCAATCCCAGCGGCGGCCATATTCACT
GCTGTGTTCATCATCCTGGCCATAGTCCACACCTATCTTGCTATAAGACA
TCGATCAAAATATTTCATTCCTTTCATCATTGGTCTACTCTGTAAGTACA
TCTTCCAGCATATGCAACCCTCACCGAACTAACATATCACGGTCTGAATA
GTCGAAGCAGCCGGCTACATCGCCCGAATCTTCTCCCACTATGACACCCT
CGCTCTCGGCCCCTACATCATCCAGACCATGCTCATCCTCGTCGCGCCTC
CCCTCTTCGCCGCTTCAATCTACATGACCTTAGGCAGACTGATTCTCTAT
CTCGACGCCGAGTCCGCCTCTCTCCTTCGAGTAAAATACATTGCTAAGAT
ATTCGTCGTCGGGGATATCATCTCCTTCCTGTTGCAATGTGGAGGTAAAT
ATACCCTACTACGCCATCAAAGTCCTCTCGAGAACCCGCCACTAACATAT
TGCAGGCGGTGGCTACATGTCAGCCGGAAGCCTCTCCGCAATGGAAGACG
GCGCCCACATTGTAATCGCCGGTTTAGCCGTCCAGCTTCTCTTCTTCGGA
TTTTTCATCATCGCCAGCGCTATCTTCCACTACCGAGTGAAGACGAATTC
GCAATACTACACTACTAGACAGGTGATATCATCCTCCTCCCGTCGTCGCG
ACTCGTGGGAATGCATGCTGTGGTGTATTTATGGGGCGTGTGTGTTGATT
CTCATTCGGTCCATTTATCGTGTCGTTGAGTTCGTGGAGGGGAATGATGG
CTTTGTTATGCGCCTGGAGTACCTGTTGTATATTTTTGATGCTGTGTTGA
TGGCCTTGCAGGCGATGTTGTTGTTGGTTGGCTATCCTGGACGGGTGTTG
GGAGGGGGCAAACGCAACGATGGGGGTGTTCCGTTGGAGGAGAGGGCGGA
TTCAGCGGAGGGTTTTCTGGGACGTGGGAAGGGGGCAGTTTAGTGTTGGT
TTAGATGCACGGATTGGGATAACGGGTCGGGTATACGGAG back to topCoding sequence (CDS) from alignment at ch4:185568..186857- >KJC3_004596-T1 ID=KJC3_004596-T1|Name=KJC3_004596-T1|organism=Aspergillus niger KJC3|type=CDS|length=2709bp|location=Sequence derived from alignment at ch4:185568..186857- (Aspergillus niger KJC3)
GCGGTGGCTACATGTCAGCCGGAAGCCTCTCCGCAATGGAAGACGGCGCC
CACATTGTAATCGCCGGTTTAGCCGTCCAGCTTCTCTTCTTCGGATTTTT
CATCATCGCCAGCGCTATCTTCCACTACCGAGTGAAGACGAATTCGCAAT
ACTACACTACTAGACAGGTGATATCATCCTCCTCCCGTCGTCGCGACTCG
TGGGAATGCATGCTGTGGTGTATTTATGGGGCGTGTGTGTTGATTCTCAT
TCGGTCCATTTATCGTGTCGTTGAGTTCGTGGAGGGGAATGATGGCTTTG
TTATGCGCCTGGAGTACCTGTTGTATATTTTTGATGCTGTGTTGATGGCC
TTGCAGGCGATGTTGTTGTTGGTTGGCTATCCTGGACGGGTGTTGGGAGG
GGGCAAACGCAACGATGGGGGTGTTCCGTTGGAGGAGAGGGCGGATTCAG
CGGAGGGTTTTCTGGGACGTGGGAAGGGGGCAGTTTAGTCGAAGCAGCCG
GCTACATCGCCCGAATCTTCTCCCACTATGACACCCTCGCTCTCGGCCCC
TACATCATCCAGACCATGCTCATCCTCGTCGCGCCTCCCCTCTTCGCCGC
TTCAATCTACATGACCTTAGGCAGACTGATTCTCTATCTCGACGCCGAGT
CCGCCTCTCTCCTTCGAGTAAAATACATTGCTAAGATATTCGTCGTCGGG
GATATCATCTCCTTCCTGTTGCAATGTGGAGATGGCCTCCCAAAATGACT
CCAGTGTATCCTTCGTTCTCTATCGATACACCCCGTCAATCCCAGCGGCG
GCCATATTCACTGCTGTGTTCATCATCCTGGCCATAGTCCACACCTATCT
TGCTATAAGACATCGATCAAAATATTTCATTCCTTTCATCATTGGTCTAC
TCTGCGGTGGCTACATGTCAGCCGGAAGCCTCTCCGCAATGGAAGACGGC
GCCCACATTGTAATCGCCGGTTTAGCCGTCCAGCTTCTCTTCTTCGGATT
TTTCATCATCGCCAGCGCTATCTTCCACTACCGAGTGAAGACGAATTCGC
AATACTACACTACTAGACAGGTGATATCATCCTCCTCCCGTCGTCGCGAC
TCGTGGGAATGCATGCTGTGGTGTATTTATGGGGCGTGTGTGTTGATTCT
CATTCGGTCCATTTATCGTGTCGTTGAGTTCGTGGAGGGGAATGATGGCT
TTGTTATGCGCCTGGAGTACCTGTTGTATATTTTTGATGCTGTGTTGATG
GCCTTGCAGGCGATGTTGTTGTTGGTTGGCTATCCTGGACGGGTGTTGGG
AGGGGGCAAACGCAACGATGGGGGTGTTCCGTTGGAGGAGAGGGCGGATT
CAGCGGAGGGTTTTCTGGGACGTGGGAAGGGGGCAGTTTAGTCGAAGCAG
CCGGCTACATCGCCCGAATCTTCTCCCACTATGACACCCTCGCTCTCGGC
CCCTACATCATCCAGACCATGCTCATCCTCGTCGCGCCTCCCCTCTTCGC
CGCTTCAATCTACATGACCTTAGGCAGACTGATTCTCTATCTCGACGCCG
AGTCCGCCTCTCTCCTTCGAGTAAAATACATTGCTAAGATATTCGTCGTC
GGGGATATCATCTCCTTCCTGTTGCAATGTGGAGATGGCCTCCCAAAATG
ACTCCAGTGTATCCTTCGTTCTCTATCGATACACCCCGTCAATCCCAGCG
GCGGCCATATTCACTGCTGTGTTCATCATCCTGGCCATAGTCCACACCTA
TCTTGCTATAAGACATCGATCAAAATATTTCATTCCTTTCATCATTGGTC
TACTCTGCGGTGGCTACATGTCAGCCGGAAGCCTCTCCGCAATGGAAGAC
GGCGCCCACATTGTAATCGCCGGTTTAGCCGTCCAGCTTCTCTTCTTCGG
ATTTTTCATCATCGCCAGCGCTATCTTCCACTACCGAGTGAAGACGAATT
CGCAATACTACACTACTAGACAGGTGATATCATCCTCCTCCCGTCGTCGC
GACTCGTGGGAATGCATGCTGTGGTGTATTTATGGGGCGTGTGTGTTGAT
TCTCATTCGGTCCATTTATCGTGTCGTTGAGTTCGTGGAGGGGAATGATG
GCTTTGTTATGCGCCTGGAGTACCTGTTGTATATTTTTGATGCTGTGTTG
ATGGCCTTGCAGGCGATGTTGTTGTTGGTTGGCTATCCTGGACGGGTGTT
GGGAGGGGGCAAACGCAACGATGGGGGTGTTCCGTTGGAGGAGAGGGCGG
ATTCAGCGGAGGGTTTTCTGGGACGTGGGAAGGGGGCAGTTTAGTCGAAG
CAGCCGGCTACATCGCCCGAATCTTCTCCCACTATGACACCCTCGCTCTC
GGCCCCTACATCATCCAGACCATGCTCATCCTCGTCGCGCCTCCCCTCTT
CGCCGCTTCAATCTACATGACCTTAGGCAGACTGATTCTCTATCTCGACG
CCGAGTCCGCCTCTCTCCTTCGAGTAAAATACATTGCTAAGATATTCGTC
GTCGGGGATATCATCTCCTTCCTGTTGCAATGTGGAGATGGCCTCCCAAA
ATGACTCCAGTGTATCCTTCGTTCTCTATCGATACACCCCGTCAATCCCA
GCGGCGGCCATATTCACTGCTGTGTTCATCATCCTGGCCATAGTCCACAC
CTATCTTGCTATAAGACATCGATCAAAATATTTCATTCCTTTCATCATTG
GTCTACTCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004596-T1.utr3p1 | KJC3_004596-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004596-T1.utr5p1 | KJC3_004596-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007568 |
| DBxref | PFAM:PF04479 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:185568..186857 - |
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