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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:189163..191075+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004597-T1 ID=KJC3_004597-T1|Name=KJC3_004597-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1913bp|location=Sequence derived from alignment at ch4:189163..191075+ (Aspergillus niger KJC3)
CCTCTTATTTGCATTCTTTCCTCCTTCAATATTCCCTGCACCTTTCAACC
ACCATGGCGTGCTACCCGAGAATCCCATATCCCATCAATTCAAACACCAA
TGCTCGATTAATAGGATGGACTCGTGTGGGCAACCTTACCGCCGTTGCTG
CGATTCTTGATTCTCCAGAAGTAGTGGACCTTCCGAAGTCTGGTGAAACA
GCACTCCATGAGGCCATCAAGCGCAACCGGCCAGACTTACTTCGTTATTT
GATTTCCCGAGGCTTCGATGTTAATCAGAAGGGCATCGAACCATATGGTG
AAGTTTGCCTGACTCCATTGCATCTTGTCGCCGCAAGCAACTCTGCCGAG
ATGGTGGATATTCTCCTCGAGGCGGGAGCAGATGCGACCCTGGATGATGT
TTCAACGGACGGAATGCGTGGCGTTCTTGGAGGGATGGATAGCGAGCCGC
ACACTCCATTTATGGCCGCAGCCTTTTGGGGCTCTAACGCTGTCGTTCAA
CGGCTGATTGATCGCCTACCTTCAGACACCATTGGCAGCCGCGAATGGTC
TCTTGCCGTCGCTGCTGCTGCACTTTATCGCCATCCAGAAACGCTAGCCA
CTCTGCTCCATAACTACCCGGCTCCTGGAGTACCACAAGATATCCTGGAC
CGCGCCTTGGCTGATGCAGCTGAGAATGAAGAGTATGACCCTTACCATGG
GATATTACCGGCCCTACCAGAGGAGTCTTGGTCCAGGGGAATCGAGACGT
TCCGGCTTTTGCTTGCCCGCGGAGCACGCCCGAACGCACAACCCCCTATG
TCCATCTATGTACCCCCTTGGACTGTGCATAAACCAATCATTCACGCCAC
CATTGACACCTCTATGGGCATGGAAATGGTCAAGATGCTTGTTGACCACG
GAGTGGACCTCCCTGACGGCTTTGCTGGGGAAGGAGAGGGGATCAGCCTT
TTTGCTCGGGCGGTGCGCAATGGGCACCCGGATCTGATCCGTTATTTCTA
TGAGCGTGAAGGCGCCATGATTAACATGAACGAAGAGCTCCGTGAGACCA
ATGTCTCCCCAGGGGGCTCCCTCCTTCATGCCGCAGCGGGTGGTGGTCGT
CTAGCAACTGTGCGATTTCTGCTGGATCACGGAGCAGACCCTAATATAAT
GAACACCAAAGGCTGGCTACCAGTGCACCAAGCCTGTCAGGGTCGCTATC
TAGAGATCATCAAAATTCTCTGGCCACTCACCTGCCCGGCTGCCGTCTCA
GATCTTGCTAATTATCGCACAGAGGACGGCCATATCGCTTTTCATCTCGC
CATGTGTTGGCGCGTTGACGATGAGGATCCCGAAGTCGAGGCACTTAGCA
CGCAGCTCCTTCACTTTTTCGAGGAAAAGGGCGCCGACCTGACCAGCCTT
GACCGCTATGGAAAAAATATACTTCACTACGCACTGCCACAGAATGAGAA
CATGTTCCCATGGTTTCGCACCCTGATTGAAGCGGGCGCACAGTTGCGTC
CTAATGCCCAAGGCCAGACGGAACTTCATCTCATTCTCGACGAACCAGAC
CGGAACCTTGTCGGTCCCAGGTTTCTTTTGGCCCAGGGTGCTAACAAGGA
TATCAACACACAAGACAACAAGGGCCGTACTCCACTGTATCACTACATCC
AGACACATTATTATGAACCGGGAAACGGGCAAGGCACCTTTCAAATCCGG
GCGGATGTTTTGGATCTCCTGATGGAGACAGGGGCTGATCCAGATATCCG
TGACGCGTCGGGAAAGTCTGCGAGGGATCTGCTGATAGAAAAGGGTTTCC
CGTACGATTTTTGATAAATACAAAGCCGTGATGTAGGCTGAATTAGTGTA
CATAATAAGATATCGTACTGCATTCGCATGGTAAGACTTCATAGTGATAC
TGTGACATTCCCG back to topCoding sequence (CDS) from alignment at ch4:189163..191075+ >KJC3_004597-T1 ID=KJC3_004597-T1|Name=KJC3_004597-T1|organism=Aspergillus niger KJC3|type=CDS|length=1761bp|location=Sequence derived from alignment at ch4:189163..191075+ (Aspergillus niger KJC3)
ATGGCGTGCTACCCGAGAATCCCATATCCCATCAATTCAAACACCAATGC
TCGATTAATAGGATGGACTCGTGTGGGCAACCTTACCGCCGTTGCTGCGA
TTCTTGATTCTCCAGAAGTAGTGGACCTTCCGAAGTCTGGTGAAACAGCA
CTCCATGAGGCCATCAAGCGCAACCGGCCAGACTTACTTCGTTATTTGAT
TTCCCGAGGCTTCGATGTTAATCAGAAGGGCATCGAACCATATGGTGAAG
TTTGCCTGACTCCATTGCATCTTGTCGCCGCAAGCAACTCTGCCGAGATG
GTGGATATTCTCCTCGAGGCGGGAGCAGATGCGACCCTGGATGATGTTTC
AACGGACGGAATGCGTGGCGTTCTTGGAGGGATGGATAGCGAGCCGCACA
CTCCATTTATGGCCGCAGCCTTTTGGGGCTCTAACGCTGTCGTTCAACGG
CTGATTGATCGCCTACCTTCAGACACCATTGGCAGCCGCGAATGGTCTCT
TGCCGTCGCTGCTGCTGCACTTTATCGCCATCCAGAAACGCTAGCCACTC
TGCTCCATAACTACCCGGCTCCTGGAGTACCACAAGATATCCTGGACCGC
GCCTTGGCTGATGCAGCTGAGAATGAAGAGTATGACCCTTACCATGGGAT
ATTACCGGCCCTACCAGAGGAGTCTTGGTCCAGGGGAATCGAGACGTTCC
GGCTTTTGCTTGCCCGCGGAGCACGCCCGAACGCACAACCCCCTATGTCC
ATCTATGTACCCCCTTGGACTGTGCATAAACCAATCATTCACGCCACCAT
TGACACCTCTATGGGCATGGAAATGGTCAAGATGCTTGTTGACCACGGAG
TGGACCTCCCTGACGGCTTTGCTGGGGAAGGAGAGGGGATCAGCCTTTTT
GCTCGGGCGGTGCGCAATGGGCACCCGGATCTGATCCGTTATTTCTATGA
GCGTGAAGGCGCCATGATTAACATGAACGAAGAGCTCCGTGAGACCAATG
TCTCCCCAGGGGGCTCCCTCCTTCATGCCGCAGCGGGTGGTGGTCGTCTA
GCAACTGTGCGATTTCTGCTGGATCACGGAGCAGACCCTAATATAATGAA
CACCAAAGGCTGGCTACCAGTGCACCAAGCCTGTCAGGGTCGCTATCTAG
AGATCATCAAAATTCTCTGGCCACTCACCTGCCCGGCTGCCGTCTCAGAT
CTTGCTAATTATCGCACAGAGGACGGCCATATCGCTTTTCATCTCGCCAT
GTGTTGGCGCGTTGACGATGAGGATCCCGAAGTCGAGGCACTTAGCACGC
AGCTCCTTCACTTTTTCGAGGAAAAGGGCGCCGACCTGACCAGCCTTGAC
CGCTATGGAAAAAATATACTTCACTACGCACTGCCACAGAATGAGAACAT
GTTCCCATGGTTTCGCACCCTGATTGAAGCGGGCGCACAGTTGCGTCCTA
ATGCCCAAGGCCAGACGGAACTTCATCTCATTCTCGACGAACCAGACCGG
AACCTTGTCGGTCCCAGGTTTCTTTTGGCCCAGGGTGCTAACAAGGATAT
CAACACACAAGACAACAAGGGCCGTACTCCACTGTATCACTACATCCAGA
CACATTATTATGAACCGGGAAACGGGCAAGGCACCTTTCAAATCCGGGCG
GATGTTTTGGATCTCCTGATGGAGACAGGGGCTGATCCAGATATCCGTGA
CGCGTCGGGAAAGTCTGCGAGGGATCTGCTGATAGAAAAGGGTTTCCCGT
ACGATTTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004597-T1.utr5p1 | KJC3_004597-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004597-T1.utr3p1 | KJC3_004597-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:189163..191075 + |
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