You are here

Home

KJC3_004638-T2, KJC3_004638-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004638-T2
Unique NameKJC3_004638-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:287228..289216+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004638-T2 ID=KJC3_004638-T2|Name=KJC3_004638-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1989bp|location=Sequence derived from alignment at ch4:287228..289216+ (Aspergillus niger KJC3)
GCCGATCATCCACGCAACTAAACCGCACTGGGCAGGTACCATCTGTCCGT
TCAAACAGCTTCACCCTCAACACGTTCCACACTGCAATCAACAGTAAACC
TTCATCTCCAGCCCGGGGCGTTGCAGACCGCTCAACTCAGGTTCCGCTCT
CTCCAGCTGCACCTGATGGCTTTCCCCCTTTCTTCTCGATCTTTCCGGTC
GAACCTCTCTGCCTCCTTGTGCAGTTTTGCATCATCGCAACCACCACACT
AATTTCTCAAATCTGAACCCCGCTTCTCCTATTTCCAACGGTGCTGGGTC
TCCTGGTTTCGGTTCATGGAAAACACCCCCTTGCACTGCCCCAACCGTTC
GTGTGCCCCGTACGGAGGAGATCTCCGCAACCGTCCACAGATCTCGGCTC
CCGATCGCCGCCATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCAC
TGAGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCTT
CTGTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGAC
GATGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAATCAC
CTTGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCTATC
ACTCGTATCGTGATGGAGCCTACTGGGTGGGTTGTTCGGCTTCGAGGGAG
TTGTCCACAGCTGTGGGCTAACGGATTACGATTCCACCTGCAGGGCCCCA
ACGATGACATCGCCAATGAACAGCAAGATCTGGCGCATCATATGTACTGT
CTGACTCTCGACGGGAAGCTACACCTAGCACCCATTTCGAATCCACAGGT
ATGGCTGGCGTTGCTTGAAGCATCTTGCAGGCTTTTTTGAGGTCTCCTGA
CTCTTGGAAAGCCCGAGTCGACAACTGTCTAAGAATGAATCGCAGGAAAT
CCTTGATGTGGGTACGGGAACCGGGATATGGGCTACGTGCGTGATCACTA
TTGCTTCCGTCGTTCCTACCATGTACCGATTACTGACTTTTGGCTCAAGC
GACATGGCAGATGAATATCCCAGTGCCAAAGTTACCGGAGTAGACTTATC
TCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTGTTTGAGATTGACG
ATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTTCGATTTTATTCAC
GTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACGAGTTCTTTCGGCA
ATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAGGTGGTAGAGCATT
CGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCCAAATCACTTCTAC
CGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGCAGTTTGGCAAAAC
CTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGGGATGCAGGTTTTG
TTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAACGCGTAGGTCTTG
CTCCTCTGTTTCCGCGTATCTCTTCTGGCTGACGACTATAACAGGTGGAG
TGCAGACCCCAAGCTCCATGAACTTGTAAGTACTTGTCCTTTGTCAGTGC
TGCTACTGCTAACACTGTCTAGGGCCGCTGGAACCAGCTTCGACTGCACG
GTGGGGTAGAGGGCTTCATGCTTCGTCTTCTCACTTCCACGCTGGAATGG
TCATACGAGCGAGCGCAGGTGTTCCTCGCTCAAATGCGCGCCTCCCTGCG
CGACTACCAGACCCACGCCTATCTACCAGTGACCGTTGTCTACGCTCGGA
AGCCTGAGAATGGTGCTATTTCCGATAGGCTGACGGTCAACTGGTCTCAC
TGACTTATGTATCTGTATACTTCGCTTTATACCCCATGACTGATGTACAA
TATGATGAATAATGAGTTACAAGCGTTTAAGATGAGAACTGTACCACGAT
ATGATTATTTGGTTACAATAGCAAGTGGTTATTCGCAAC
back to top

Coding sequence (CDS) from alignment at ch4:287228..289216+

>KJC3_004638-T2 ID=KJC3_004638-T2|Name=KJC3_004638-T2|organism=Aspergillus niger KJC3|type=CDS|length=3420bp|location=Sequence derived from alignment at ch4:287228..289216+ (Aspergillus niger KJC3)
ATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCACTGAGATCCCTTT
GAGCATCAGCACAGATACCCCACACCGTGTCTATTCTTCTGTCGATATGT
CAACCCGCATGAGCGATGGCGAGGACAACATCGCGGACGATGACTCCGCG
TACGGCGAGGACACCTTGATCGGCGATGACACAATCACCTTGTCCACTTA
CATCACCGACTACCGATATGAGTATGGCCGTCGCTATCACTCGTATCGTG
ATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAATGAACAGCAAGAT
CTGGCGCATCATATGTACTGTCTGACTCTCGACGGGAAGCTACACCTAGC
ACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGTACGGGAACCGGGA
TATGGGCTACCGACATGGCAGATGAATATCCCAGTGCCAAAGTTACCGGA
GTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTCCGAACTGCGTGTT
TGAGATTGACGATGTGACGCTCCCGTGGACCTATGCGGAAAACCAGTTCG
ATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACCTGATTGGGACGAG
TTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCGGTTACATTGAGGT
GGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGGACCGTGCCCCCAA
ATCACTTCTACCGACTCTGGGGACAAACCGTCATTGGTGCCGGAGAGCAG
TTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCGCACGTCTGAGGGA
TGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAATGAACG
CGTAGATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCACTGAGATC
CCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCTTCTGTCGA
TATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGACGATGACT
CCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAATCACCTTGTCC
ACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCTATCACTCGTA
TCGTGATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAATGAACAGC
AAGATCTGGCGCATCATATGTACTGTCTGACTCTCGACGGGAAGCTACAC
CTAGCACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGTACGGGAAC
CGGGATATGGGCTACCGACATGGCAGATGAATATCCCAGTGCCAAAGTTA
CCGGAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTCCGAACTGC
GTGTTTGAGATTGACGATGTGACGCTCCCGTGGACCTATGCGGAAAACCA
GTTCGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACCTGATTGGG
ACGAGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCGGTTACATT
GAGGTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGGACCGTGCC
CCCAAATCACTTCTACCGACTCTGGGGACAAACCGTCATTGGTGCCGGAG
AGCAGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCGCACGTCTG
AGGGATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAGTGGCCAAT
GAACGCGTAGATGACCTCTTCCCGCTGCGAGGAACATAGCCTTACCACTG
AGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATTCTTCT
GTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCGGACGA
TGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAATCACCT
TGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCTATCAC
TCGTATCGTGATGGAGCCTACTGGGGCCCCAACGATGACATCGCCAATGA
ACAGCAAGATCTGGCGCATCATATGTACTGTCTGACTCTCGACGGGAAGC
TACACCTAGCACCCATTTCGAATCCACAGGAAATCCTTGATGTGGGTACG
GGAACCGGGATATGGGCTACCGACATGGCAGATGAATATCCCAGTGCCAA
AGTTACCGGAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCCTCCGA
ACTGCGTGTTTGAGATTGACGATGTGACGCTCCCGTGGACCTATGCGGAA
AACCAGTTCGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATACCTGA
TTGGGACGAGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGGCGGTT
ACATTGAGGTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATGGGACC
GTGCCCCCAAATCACTTCTACCGACTCTGGGGACAAACCGTCATTGGTGC
CGGAGAGCAGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGCCGCAC
GTCTGAGGGATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCCAGTGG
CCAATGAACGCGTAGATGACCTCTTCCCGCTGCGAGGAACATAGCCTTAC
CACTGAGATCCCTTTGAGCATCAGCACAGATACCCCACACCGTGTCTATT
CTTCTGTCGATATGTCAACCCGCATGAGCGATGGCGAGGACAACATCGCG
GACGATGACTCCGCGTACGGCGAGGACACCTTGATCGGCGATGACACAAT
CACCTTGTCCACTTACATCACCGACTACCGATATGAGTATGGCCGTCGCT
ATCACTCGTATCGTGATGGAGCCTACTGGGGCCCCAACGATGACATCGCC
AATGAACAGCAAGATCTGGCGCATCATATGTACTGTCTGACTCTCGACGG
GAAGCTACACCTAGCACCCATTTCGAATCCACAGGAAATCCTTGATGTGG
GTACGGGAACCGGGATATGGGCTACCGACATGGCAGATGAATATCCCAGT
GCCAAAGTTACCGGAGTAGACTTATCTCCGATTCAGCCCCCATTCGTCCC
TCCGAACTGCGTGTTTGAGATTGACGATGTGACGCTCCCGTGGACCTATG
CGGAAAACCAGTTCGATTTTATTCACGTGCGGGAATTGTTTGGCTGCATA
CCTGATTGGGACGAGTTCTTTCGGCAATGCTGGCGTTGCCTCAAACCCGG
CGGTTACATTGAGGTGGTAGAGCATTCGGTCGAGCCGGTCGCGGATGATG
GGACCGTGCCCCCAAATCACTTCTACCGACTCTGGGGACAAACCGTCATT
GGTGCCGGAGAGCAGTTTGGCAAAACCTTCAAAATCTGGGAACAGAGCGC
CGCACGTCTGAGGGATGCAGGTTTTGTTGGCGTTGTGGAAAACAAGTTCC
AGTGGCCAATGAACGCGTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004638KJC3_004638Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004638-T2KJC3_004638-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004638-T2.utr5p1KJC3_004638-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004638-T2.exon1KJC3_004638-T2.exon1Aspergillus niger KJC3exon
KJC3_004638-T2.exon2KJC3_004638-T2.exon2Aspergillus niger KJC3exon
KJC3_004638-T2.exon3KJC3_004638-T2.exon3Aspergillus niger KJC3exon
KJC3_004638-T2.exon4KJC3_004638-T2.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004638-T2.cdsKJC3_004638-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004638-T2.utr3p1KJC3_004638-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029063
DBxrefPFAM:PF13649
DBxrefPFAM:PF13489
DBxrefPFAM:PF08242
DBxrefPFAM:PF08241
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:287228..289216 +
Powered by Drupal