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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:338993..340544+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004659-T1 ID=KJC3_004659-T1|Name=KJC3_004659-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1552bp|location=Sequence derived from alignment at ch4:338993..340544+ (Aspergillus niger KJC3)
CTTCATTCCAAAGCCATACGTGGTACTCCTGCCATTGCCGTTCCGTTTGT
TTAGATCGTCGTCCACATCCCCCTGTCGCCATCCCTCGCAGCCCGCTGTC
GCATATTCCTCACGCAGTTACTACAATCAACACAACAAACAGTCATGGTA
CGTGGCCGTCTCGCAATGTCAATTAAAAGCATCATTATCCCTCGCTGGCG
GGAGAGGAATTGTCCGGATGGCATCAGGAACGAGCAGCACTCTGTATCCC
TTGTTTGTTGACTGTCGTGGTCAACCTCGCGGATAACTGGTGTGGTTGGA
TCCATTGAATTCCGGCCCCTCGTCGGCCCATCCAATCCCTTTGCTCGTTT
CCATGGTTCACTAGTAGTCGTGGCTGCTTGTTCGTCATCGGCACACTTCA
TCTCCCTGTCTTCTTTCCATCCTCCATTTCATCTCTGATCTTTACTCTTC
ATCCCGGATTTTTGCACGTGTGATTTCACTTTCAAGATGTCTCGCTCACC
AGATATGCACCATGACCAGGCCTCGACCAACTACAAGGAAGCCTTCTCTC
TCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCGAGTCGCTAGGCGAC
CTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCGGAGATCGCAGATTT
GGAGAAGTCCATCGGTGGAGACTGTACGTTTTGACTTGCTCTGAAATGGC
TCATGTGTATCTAACACACTTGTGCGCAGTTGACTTCGAGTCGTTCTTGA
AGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAA
TACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGG
TGTGGGACAGCTCCGATACAGTATGTGAAGCAGGATGGAGTTTACTGGAT
TGATACTGATCATGGCTACAGTCCTGACGAATCTCGGTGAGAAGATGTCG
GATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGTTCCGGCGA
GATCAACTACACCGGTATGTTACACCATCTGATTGTTCACCATGCCTTTG
TGTTGGGTCAAGCTAACAGCAGCAGACCTCGTCCGCACCATCCTGGCCAA
CTAAACGACACACGATACCGATACCCTCCTGACGTTCCTGATGATTTCTG
TTACGACGCGAACCTTCTACCAGCCGTGCCGGAGTTGAAGGCTTGAGCAT
AGTTTAGTTATAGTGCATTGTATATGGGATATTGCGCGATTCAGCATCGG
ATAAACATAAGATAAATAAACATGATAAAATGATACATGGTATATGGAAG
TAAAGTATAAATAGCACAATCAACTCCTCATAATAATCACTTCCCCTTCC
CAACACCATAGCCACTACCAAACCCATCATTTAGAAATATACACCATAAC
CCACAACATCAAAGGTACGCCATCCGAACTGATTATCCCTCCAACCACCC
CACCCACTCTCTATCCAACCCCTTGACCACCTTCTCTAGCTCATCCCCCA
TCATAACCCCCGTCTCCACCAAAGCCCCCGGCAAGAGATAAACCACCCTA
GC back to topCoding sequence (CDS) from alignment at ch4:338993..340544+ >KJC3_004659-T1 ID=KJC3_004659-T1|Name=KJC3_004659-T1|organism=Aspergillus niger KJC3|type=CDS|length=2100bp|location=Sequence derived from alignment at ch4:338993..340544+ (Aspergillus niger KJC3)
ATGGCCTCGACCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGG
TACCGGCAAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCG
GTCAGAATCCTACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGT
GGAGACTTTGACTTCGAGTCGTTCTTGAAGGTCCTCAACCGCCCTGGAGG
CTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCCGCGGATTCCAGGTGT
TCGACAAGGACCTGACTGGGTTTATCGGTGTGGGACAGCTCCGATACATC
CTGACGAATCTCGGTGAGAAGATGTCGGATGAGGAGGTTGACGAGCTACT
CAAGGCCGTCGACACCAGTTCCGGCGAGATCAACTACACCGACCTCGTCC
GCACCATCCTGGCCAACTAAATGGCCTCGACCAACTACAAGGAAGCCTTC
TCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCGAGTCGCTAGG
CGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCGGAGATCGCAG
ATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTCGTTCTTGAAG
GTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATA
CTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTG
TGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAAGATGTCGGAT
GAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGTTCCGGCGAGAT
CAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAAATGGCCTCGA
CCAACTACAAGGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAG
GTCGCGCTCGAGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCC
TACTTTGGCGGAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTG
ACTTCGAGTCGTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGAC
CCTGGCGAGCCCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGA
CCTGACTGGGTTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATC
TCGGTGAGAAGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTC
GACACCAGTTCCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCT
GGCCAACTAAATGGCCTCGACCAACTACAAGGAAGCCTTCTCTCTCTTCG
ATAAGCGTGGTACCGGCAAGGTCGCGCTCGAGTCGCTAGGCGACCTCCTG
CGCGCATGCGGTCAGAATCCTACTTTGGCGGAGATCGCAGATTTGGAGAA
GTCCATCGGTGGAGACTTTGACTTCGAGTCGTTCTTGAAGGTCCTCAACC
GCCCTGGAGGCTTCCGTGACCCTGGCGAGCCCGAAGAATACTGCCGCGGA
TTCCAGGTGTTCGACAAGGACCTGACTGGGTTTATCGGTGTGGGACAGCT
CCGATACATCCTGACGAATCTCGGTGAGAAGATGTCGGATGAGGAGGTTG
ACGAGCTACTCAAGGCCGTCGACACCAGTTCCGGCGAGATCAACTACACC
GACCTCGTCCGCACCATCCTGGCCAACTAAATGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGTT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004659-T1.utr5p1 | KJC3_004659-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004659-T1.utr3p1 | KJC3_004659-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265591 |
| DBxref | InterPro:IPR011992 |
| DBxref | InterPro:IPR002048 |
| DBxref | PFAM:PF13833 |
| DBxref | PFAM:PF13499 |
| Product | SCF ubiquitin ligase complex subunit cdc4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:338993..340544 + |
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