|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:354079..356919+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004666-T1 ID=KJC3_004666-T1|Name=KJC3_004666-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2841bp|location=Sequence derived from alignment at ch4:354079..356919+ (Aspergillus niger KJC3)
CCCGAACATGGCAGCGATAGAAACCCATCTCGCAGTTACATGCCACAACG
CCAGTCGCTGAGGCCCCCAAATACCAGCTAATCTTTAGGACTCGTTCTAT
TCATGCTTGCTGCCGGGATATACTCCCCTAACCGGCTTACACCATGAAGA
ATGTCCGAAATGACTTTCTCCCCGCCGATCGGAAAATTGCAACCCGAGGT
ACGGAGAATCTCGATCACAACTCACTGCAAAACCTGCTGACACTTCAGAC
TGCCGTTTATGCACTAAAAGACGCATAAAATGTGATCGGACTATCCCACA
GTGCCGCAAATGCACTATTCGGGGGCACTGTTGTCCTGGGTTCGACGCAG
TTCAATTGAACTGGAACCATTCTATGGCACGTCGGGCGAACCAGATCTCA
TCTCGATCTGAATTCAGTCATCCGCAAGATCGAGAAACGAAAGGCTACCT
CGTTAGGCATGGTACTGCTATCCTCCATACTTTTGTTGTGGAGGCCAGTC
CGCCGATCCCTAACCCGCTGACAGATGACGGTCTCAGTCGTCGCCAGTCA
TCGACAGTTCTAGGTGAACGGCTGATCAATCATTTTAGCTGCCATGTTGT
AAGCATATTCTCGTGGATCGACAGTCACAAGAATCCTTGGAGGAAGATCG
TGCTACCTCTGGCACAGGGGTCTATAAGTGTCCGCCTGTCTATACTGAAC
CTCGCTGCCGCTCACTTAGCAGCCACTTCTACTGGTACCATTGCATTACG
TATGAAACAGGTCAACTATAGCCTAAGAGATATTGCCTTACGCAGCCTAA
ACCAAGAGATCCAGCGCCAACTAGACTGCCATGCCGTGAAGCCACCTGAC
CAGCTATGTCTGACTAGAATTCTCATTGCTGCGATTACACTTTGCCATGC
GGAATTGGTGACTCGCGATTCGACCGATTGGACTACTCATCTACATGCAT
GTCGGTCGATCGTAAGCAGGTACGGCGTGTGCGCTCGCAACGAGTCTCTC
GATCCTATGACACAATTTGCGATCAAAGAGATCAGGGACGTTGAGGTGTT
CAACAACGTCTTCTCGTTCTCAAGCAGCAGTAAAGTAGCGACTACCGCAA
TTGAGTTTCAGCCCTGGACGTTTACAGACCTGATCAATGACATCACTTCC
ATGGAAAGACATCATTATGGGTATCTCAATGAAGGCCGACAGCCACCTGA
TGTTGACTTCAACACCTGGCAAGCAAAGCTAGAGCAAGCCTCCGCACAAA
TGAGTATGTCGGATATCACATGTCTGTTGGCCCAGGGGAAGACTACGCGA
GACGGCTTTGAAGCCCTCATAGACACCCATTATTACGCAACTCTTATATA
TCTCCATCAGGCGTTTGCATCTCCAACCTCAATGATGAAAACCGTCTCCT
CCACTTTACCCATCCTCCTTGATAGAATTCAAAAGGTTGCTTTGGCTTCC
AGCGATGCGTTCGCCCAGGATCTCTTTTTCCCTCTTTTTATTGCTGGTAC
AGAGTGTTGGGGAGATGAGGGTAAGCAACAGATAGTTCAACAGATTCTCC
TCAAGCTACTTGTCACGACTGGGTTGTGGTGCAACCACAGGGCGCTGGAT
TTTCTGCGTGCATTCTGGTCAAGCTCGAAGCATCATGGCACCGGAAAGTG
GATACAGTATGGTCGAGATTCCAAGCAACAGCTGGGTCATTTTCTTGTGT
TCTGAGATGGAATGATCTCGGAGAATATCCTCCGTTATCTATCACAAAAC
TGGTTTCATGCAGCTCATGCCATGTCACGCCATCACATATCAACGGTTTC
TTCATCCTCTACGCCGAACAACGCCCTCATTGGATCCTGATAATACATGA
ATCCAACCCCTGGCTCGCAGACTTTGTACCCTAGAAGTCTTTGGGCCTGG
GGCTTCATCTTCTTCACTCGCTCTAAGGGAACTACCAAGAACTGGTTCTC
GGCTGGACGTAGTGTTGGCTTGCAGAGGAAAATTCCCACCGTTTCGCGAT
AATTGTTTCTGAACGCAAAGATGGTCACCAAAATGCAACATTGAAATGAA
GAAGGGAGCAACATACTCTGTGACATTTGCACCACCAGCATGATACAGAT
TCCCCAAGAAGATAAACGCATCACCGGGTTCCAATTCTGCAGGAATGGCC
TCCTCATCTAATGGTCGCCGCTCCGGGCCCCAGAGATGTGAACCCGGAAT
GGCAACGGTCGCTCCATTTTCCTTGGTTGTCTTTGTCAATGCAGTCACAC
AGCCAATCATCACGGGCAGTTGCGCATCGTGTGGGTGATAGTCACTGCTT
TTCATCAGCCTACTAAAATTGGCAAAGGTCCCGTCAGGCCTACTTATCGT
CACGGTGAAGCACCTGCTGTTTGCTTCCCGGTGTCACTCGGAACCCAGCC
GTGCTAGAGATGATGGGCTTCCCAGACACCGTCACCTTATGATCGCCCTC
CAGAAGGAATAACTTGACGAGACAAGTGCATTGGCGATGCTGATATATGT
TGGATTACATGCCAATTCGATGCAGGCATCCGAGATGCCTAGCAGACCAG
TAGCACGCTGGGTTGTCGGAGGGAACAGACCATACTTGTCTGGTGTATCT
TTGTCGAAGTGTGGCTTCAGATCTTGTTTGATTTGCTCCGCTGCATCGCG
GGTGATGAGGCTCTCTACGATCACTCCCCCGTCTCGACGGATTGCCTCGA
CGAGGACATCAGTAGAGGTAGCGGTAGCATTAAAGCGTGTGAAAGAAGGC
TTGTTGTTAGAAGAGATCATTGTTCTTATATATAACAGCCAAATGAACCT
AGATGACGACGAATTTAATGCAAATACTGATGACCCTGCAA back to topCoding sequence (CDS) from alignment at ch4:354079..356919+ >KJC3_004666-T1 ID=KJC3_004666-T1|Name=KJC3_004666-T1|organism=Aspergillus niger KJC3|type=CDS|length=4347bp|location=Sequence derived from alignment at ch4:354079..356919+ (Aspergillus niger KJC3)
ATGAAGAATGTCCGAAATGACTTTCTCCCCGCCGATCGGAAAATTGCAAC
CCGAGACTGCCGTTTATGCACTAAAAGACGCATAAAATGTGATCGGACTA
TCCCACAGTGCCGCAAATGCACTATTCGGGGGCACTGTTGTCCTGGGTTC
GACGCAGTTCAATTGAACTGGAACCATTCTATGGCACGTCGGGCGAACCA
GATCTCATCTCGATCTGAATTCAGTCATCCGCAAGATCGAGAAACGAAAG
GCTACCTCGTTAGGCATGATGACGGTCTCAGTCGTCGCCAGTCATCGACA
GTTCTAGGTGAACGGCTGATCAATCATTTTAGCTGCCATGTTGTAAGCAT
ATTCTCGTGGATCGACAGTCACAAGAATCCTTGGAGGAAGATCGTGCTAC
CTCTGGCACAGGGGTCTATAAGTGTCCGCCTGTCTATACTGAACCTCGCT
GCCGCTCACTTAGCAGCCACTTCTACTGGTACCATTGCATTACGTATGAA
ACAGGTCAACTATAGCCTAAGAGATATTGCCTTACGCAGCCTAAACCAAG
AGATCCAGCGCCAACTAGACTGCCATGCCGTGAAGCCACCTGACCAGCTA
TGTCTGACTAGAATTCTCATTGCTGCGATTACACTTTGCCATGCGGAATT
GGTGACTCGCGATTCGACCGATTGGACTACTCATCTACATGCATGTCGGT
CGATCGTAAGCAGGTACGGCGTGTGCGCTCGCAACGAGTCTCTCGATCCT
ATGACACAATTTGCGATCAAAGAGATCAGGGACGTTGAGGTGTTCAACAA
CGTCTTCTCGTTCTCAAGCAGCAGTAAAGTAGCGACTACCGCAATTGAGT
TTCAGCCCTGGACGTTTACAGACCTGATCAATGACATCACTTCCATGGAA
AGACATCATTATGGGTATCTCAATGAAGGCCGACAGCCACCTGATGTTGA
CTTCAACACCTGGCAAGCAAAGCTAGAGCAAGCCTCCGCACAAATGAGTA
TGTCGGATATCACATGTCTGTTGGCCCAGGGGAAGACTACGCGAGACGGC
TTTGAAGCCCTCATAGACACCCATTATTACGCAACTCTTATATATCTCCA
TCAGGCGTTTGCATCTCCAACCTCAATGATGAAAACCGTCTCCTCCACTT
TACCCATCCTCCTTGATAGAATTCAAAAGGTTGCTTTGGCTTCCAGCGAT
GCGTTCGCCCAGGATCTCTTTTTCCCTCTTTTTATTGCTGGTACAGAGTG
TTGGGGAGATGAGGGTAAGCAACAGATAGTTCAACAGATTCTCCTCAAGC
TACTTGTCACGACTGGGTTGTGGTGCAACCACAGGGCGCTGGATTTTCTG
CGTGCATTCTGGTCAAGCTCGAAGCATCATGGCACCGGAAAGTGGATACA
GTATGGTCGAGATTCCAAGCAACAGCTGGGTCATTTTCTTGTGTTCTGAA
TGAAGAATGTCCGAAATGACTTTCTCCCCGCCGATCGGAAAATTGCAACC
CGAGACTGCCGTTTATGCACTAAAAGACGCATAAAATGTGATCGGACTAT
CCCACAGTGCCGCAAATGCACTATTCGGGGGCACTGTTGTCCTGGGTTCG
ACGCAGTTCAATTGAACTGGAACCATTCTATGGCACGTCGGGCGAACCAG
ATCTCATCTCGATCTGAATTCAGTCATCCGCAAGATCGAGAAACGAAAGG
CTACCTCGTTAGGCATGATGACGGTCTCAGTCGTCGCCAGTCATCGACAG
TTCTAGGTGAACGGCTGATCAATCATTTTAGCTGCCATGTTGTAAGCATA
TTCTCGTGGATCGACAGTCACAAGAATCCTTGGAGGAAGATCGTGCTACC
TCTGGCACAGGGGTCTATAAGTGTCCGCCTGTCTATACTGAACCTCGCTG
CCGCTCACTTAGCAGCCACTTCTACTGGTACCATTGCATTACGTATGAAA
CAGGTCAACTATAGCCTAAGAGATATTGCCTTACGCAGCCTAAACCAAGA
GATCCAGCGCCAACTAGACTGCCATGCCGTGAAGCCACCTGACCAGCTAT
GTCTGACTAGAATTCTCATTGCTGCGATTACACTTTGCCATGCGGAATTG
GTGACTCGCGATTCGACCGATTGGACTACTCATCTACATGCATGTCGGTC
GATCGTAAGCAGGTACGGCGTGTGCGCTCGCAACGAGTCTCTCGATCCTA
TGACACAATTTGCGATCAAAGAGATCAGGGACGTTGAGGTGTTCAACAAC
GTCTTCTCGTTCTCAAGCAGCAGTAAAGTAGCGACTACCGCAATTGAGTT
TCAGCCCTGGACGTTTACAGACCTGATCAATGACATCACTTCCATGGAAA
GACATCATTATGGGTATCTCAATGAAGGCCGACAGCCACCTGATGTTGAC
TTCAACACCTGGCAAGCAAAGCTAGAGCAAGCCTCCGCACAAATGAGTAT
GTCGGATATCACATGTCTGTTGGCCCAGGGGAAGACTACGCGAGACGGCT
TTGAAGCCCTCATAGACACCCATTATTACGCAACTCTTATATATCTCCAT
CAGGCGTTTGCATCTCCAACCTCAATGATGAAAACCGTCTCCTCCACTTT
ACCCATCCTCCTTGATAGAATTCAAAAGGTTGCTTTGGCTTCCAGCGATG
CGTTCGCCCAGGATCTCTTTTTCCCTCTTTTTATTGCTGGTACAGAGTGT
TGGGGAGATGAGGGTAAGCAACAGATAGTTCAACAGATTCTCCTCAAGCT
ACTTGTCACGACTGGGTTGTGGTGCAACCACAGGGCGCTGGATTTTCTGC
GTGCATTCTGGTCAAGCTCGAAGCATCATGGCACCGGAAAGTGGATACAG
TATGGTCGAGATTCCAAGCAACAGCTGGGTCATTTTCTTGTGTTCTGAAT
GAAGAATGTCCGAAATGACTTTCTCCCCGCCGATCGGAAAATTGCAACCC
GAGACTGCCGTTTATGCACTAAAAGACGCATAAAATGTGATCGGACTATC
CCACAGTGCCGCAAATGCACTATTCGGGGGCACTGTTGTCCTGGGTTCGA
CGCAGTTCAATTGAACTGGAACCATTCTATGGCACGTCGGGCGAACCAGA
TCTCATCTCGATCTGAATTCAGTCATCCGCAAGATCGAGAAACGAAAGGC
TACCTCGTTAGGCATGATGACGGTCTCAGTCGTCGCCAGTCATCGACAGT
TCTAGGTGAACGGCTGATCAATCATTTTAGCTGCCATGTTGTAAGCATAT
TCTCGTGGATCGACAGTCACAAGAATCCTTGGAGGAAGATCGTGCTACCT
CTGGCACAGGGGTCTATAAGTGTCCGCCTGTCTATACTGAACCTCGCTGC
CGCTCACTTAGCAGCCACTTCTACTGGTACCATTGCATTACGTATGAAAC
AGGTCAACTATAGCCTAAGAGATATTGCCTTACGCAGCCTAAACCAAGAG
ATCCAGCGCCAACTAGACTGCCATGCCGTGAAGCCACCTGACCAGCTATG
TCTGACTAGAATTCTCATTGCTGCGATTACACTTTGCCATGCGGAATTGG
TGACTCGCGATTCGACCGATTGGACTACTCATCTACATGCATGTCGGTCG
ATCGTAAGCAGGTACGGCGTGTGCGCTCGCAACGAGTCTCTCGATCCTAT
GACACAATTTGCGATCAAAGAGATCAGGGACGTTGAGGTGTTCAACAACG
TCTTCTCGTTCTCAAGCAGCAGTAAAGTAGCGACTACCGCAATTGAGTTT
CAGCCCTGGACGTTTACAGACCTGATCAATGACATCACTTCCATGGAAAG
ACATCATTATGGGTATCTCAATGAAGGCCGACAGCCACCTGATGTTGACT
TCAACACCTGGCAAGCAAAGCTAGAGCAAGCCTCCGCACAAATGAGTATG
TCGGATATCACATGTCTGTTGGCCCAGGGGAAGACTACGCGAGACGGCTT
TGAAGCCCTCATAGACACCCATTATTACGCAACTCTTATATATCTCCATC
AGGCGTTTGCATCTCCAACCTCAATGATGAAAACCGTCTCCTCCACTTTA
CCCATCCTCCTTGATAGAATTCAAAAGGTTGCTTTGGCTTCCAGCGATGC
GTTCGCCCAGGATCTCTTTTTCCCTCTTTTTATTGCTGGTACAGAGTGTT
GGGGAGATGAGGGTAAGCAACAGATAGTTCAACAGATTCTCCTCAAGCTA
CTTGTCACGACTGGGTTGTGGTGCAACCACAGGGCGCTGGATTTTCTGCG
TGCATTCTGGTCAAGCTCGAAGCATCATGGCACCGGAAAGTGGATACAGT
ATGGTCGAGATTCCAAGCAACAGCTGGGTCATTTTCTTGTGTTCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004666-T1.utr5p1 | KJC3_004666-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004666-T1.utr3p1 | KJC3_004666-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR021858 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:354079..356919 + |
|
