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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:418785..420387+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004689-T1 ID=KJC3_004689-T1|Name=KJC3_004689-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1603bp|location=Sequence derived from alignment at ch4:418785..420387+ (Aspergillus niger KJC3)
TTTTCCCTCTTTTTCCTCCTCGTCCTCGCGCATCTCCCGCCACAGACGCC
TACCAATCGCTGCTAGAGGTTCTCAGATCGCTGGTAGGTCTGAGAATCAT
ATTATGCCATTAGCTCTGAGACTGTTCAGGCAGAATGGACCTGCGCAATG
AGCCGCTCTGGCAGTGGCCTTCTAGCTCTGCCTCCGTCTCAGCCTCGGAC
CCTGACTTTGGTGTAAGGCAGAGTCCGGAAGATGATGCTGGACCTGATGG
CTCTTCGCAACCTTCAGGCGAGACTTTCGAAAAGCATTACCCTCCTCGTA
CATGTCGCATTTGCCTGGAGACCGTCTACCCTACTTTCCCTCCTCCATCC
GAACACCTGCCTGGGTTTCTTCAGTCCAAGCAACGCGTGACATACCAGTC
CTCAGACCCGGAGTCTGGTCGATTGCTTCGCCCTTGCAAATGCAAAGGAT
CCTCGCGTTATGTGCATGAGGGATGTTTACAACTTTGGCGACACGCGGAC
CCAGGTTATGGCAAGAGGAATTATTGGCACTGTCCGACTTGTGGTTTCCA
CTATCGCTTAGAGCGCCTCCGGTGGGCACACTGGATCAGTAGCCCATTGA
CGCAGCTTGGACTCACCCTAATAATTCTAATGTTGACTGTATTTTTACTT
GGTTTTATTGCTGACCCGATCATTAATTTATACGTGGACCCTATGGACCC
CATTATCCGCTCGGACTACTGGGATACGCGTCCTGTGGCGAGTATCTTAC
CTGACAACGAAGAGGCTTCCTGGACTGAGCACTTCATCAAGGGGCTAGCC
TCTTTGGGATTTCTGTCTTTCATCAAGGCCGTGTTTGCGCTTTCTTCATG
GCACGGATTGACACTGCGCGGCACAGGGATGTTTGGTGGCGGAAGGAATT
CTGGCCGCAACCGGGTCGCGTGGCTTGTCATCGTCATCGGTGTTGGTAGT
TTTCTTTGGGTATGTTCACAACCTATAATTCTTTTATTTATTGGCAACTT
CTGACCGCAAATATTAGGCTGTTTACAAAGGTGTAAGAACATGGAGCTGC
AGGGCTTTAGAAAAAGCCGGAGAGCGAGTCATGGATGTTCCGTTGCCTGA
TGACGAGGATGAAGATGATAAAGCCTCCGCGGAAAAGTCCGATGAAAGTA
AGAAGGAAGATTGACCCTGGTCCGACGTATGCCATCTACAGTCATGAATC
TTCGTACTCAAGTTTGTTTTCTATCCTTCTAAGTGCTCTATTCGCTGGCG
ATATTCACGCACTACTTTGAGTTGTCACACTCCTTATCAATGAGGTGCCA
ATCAGTCACTGTGCGAAGAACGATGCAGACCCTCGCTAACCTCACAGCTC
ATGTCTGTTAAGTAGTGTGGCTGGCGAGGACGTTTTGTTCTTTCCTTTTC
ACCTGCTTAGTTCCGCATTCATGACTGGAGGGAGGGTCAAACTGCATTCT
CGATTAAACTAGACGCTCGAATCTTTCGGGATTTTTTGGTAAGCGTCATT
GATTGAGATGCGGTACACTCATAATATGTAGTTTTCATATACCCTGAATG
TTATTTACATTGTGCCTTATTCCATATGCCATTCTCAAATAGTTCGTTTC
TCA back to topCoding sequence (CDS) from alignment at ch4:418785..420387+ >KJC3_004689-T1 ID=KJC3_004689-T1|Name=KJC3_004689-T1|organism=Aspergillus niger KJC3|type=CDS|length=1944bp|location=Sequence derived from alignment at ch4:418785..420387+ (Aspergillus niger KJC3)
ATGGACCTGCGCAATGAGCCGCTCTGGCAGTGGCCTTCTAGCTCTGCCTC
CGTCTCAGCCTCGGACCCTGACTTTGGTGTAAGGCAGAGTCCGGAAGATG
ATGCTGGACCTGATGGCTCTTCGCAACCTTCAGGCGAGACTTTCGAAAAG
CATTACCCTCCTCGTACATGTCGCATTTGCCTGGAGACCGTCTACCCTAC
TTTCCCTCCTCCATCCGAACACCTGCCTGGGTTTCTTCAGTCCAAGCAAC
GCGTGACATACCAGTCCTCAGACCCGGAGTCTGGTCGATTGCTTCGCCCT
TGCAAATGCAAAGGATCCTCGCGTTATGTGCATGAGGGATGTTTACAACT
TTGGCGACACGCGGACCCAGGTTATGGCAAGAGGAATTATTGGCACTGTC
CGACTTGTGGTTTCCACTATCGCTTAGAGCGCCTCCGGTGGGCACACTGG
ATCAGTAGCCCATTGACGCAGCTTGGACTCACCCTAATAATTCTAATGTT
GACTGTATTTTTACTTGGTTTTATTGCTGACCCGATCATTAATTTATACG
TGGACCCTATGGACCCCATTATCCGCTCGGACTACTGGGATACGCGTCCT
GTGGCGAGTATCTTACCTGACAACGAAGAGGCTTCCTGGACTGAGCACTT
CATCAAGGGGCTAGCCTCTTTGGGATTTCTGTCTTTCATCAAGGCCGTGT
TTGCGCTTTCTTCATGGCACGGATTGACACTGCGCGGCACAGGGATGTTT
GGTGGCGGAAGGAATTCTGGCCGCAACCGGGTCGCGTGGCTTGTCATCGT
CATCGGTGTTGGTAGTTTTCTTTGGGCTGTTTACAAAGGTGTAAGAACAT
GGAGCTGCAGGGCTTTAGAAAAAGCCGGAGAGCGAGTCATGGATGTTCCG
TTGCCTGATGACGAGGATGAAGATGATAAAGCCTCCGCGGAAAAGTCCGA
TGAAAGTAAGAAGGAAGATTGAATGGACCTGCGCAATGAGCCGCTCTGGC
AGTGGCCTTCTAGCTCTGCCTCCGTCTCAGCCTCGGACCCTGACTTTGGT
GTAAGGCAGAGTCCGGAAGATGATGCTGGACCTGATGGCTCTTCGCAACC
TTCAGGCGAGACTTTCGAAAAGCATTACCCTCCTCGTACATGTCGCATTT
GCCTGGAGACCGTCTACCCTACTTTCCCTCCTCCATCCGAACACCTGCCT
GGGTTTCTTCAGTCCAAGCAACGCGTGACATACCAGTCCTCAGACCCGGA
GTCTGGTCGATTGCTTCGCCCTTGCAAATGCAAAGGATCCTCGCGTTATG
TGCATGAGGGATGTTTACAACTTTGGCGACACGCGGACCCAGGTTATGGC
AAGAGGAATTATTGGCACTGTCCGACTTGTGGTTTCCACTATCGCTTAGA
GCGCCTCCGGTGGGCACACTGGATCAGTAGCCCATTGACGCAGCTTGGAC
TCACCCTAATAATTCTAATGTTGACTGTATTTTTACTTGGTTTTATTGCT
GACCCGATCATTAATTTATACGTGGACCCTATGGACCCCATTATCCGCTC
GGACTACTGGGATACGCGTCCTGTGGCGAGTATCTTACCTGACAACGAAG
AGGCTTCCTGGACTGAGCACTTCATCAAGGGGCTAGCCTCTTTGGGATTT
CTGTCTTTCATCAAGGCCGTGTTTGCGCTTTCTTCATGGCACGGATTGAC
ACTGCGCGGCACAGGGATGTTTGGTGGCGGAAGGAATTCTGGCCGCAACC
GGGTCGCGTGGCTTGTCATCGTCATCGGTGTTGGTAGTTTTCTTTGGGCT
GTTTACAAAGGTGTAAGAACATGGAGCTGCAGGGCTTTAGAAAAAGCCGG
AGAGCGAGTCATGGATGTTCCGTTGCCTGATGACGAGGATGAAGATGATA
AAGCCTCCGCGGAAAAGTCCGATGAAAGTAAGAAGGAAGATTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004689-T1.utr5p1 | KJC3_004689-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004689-T1.utr3p1 | KJC3_004689-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR011016 |
| DBxref | PFAM:PF12906 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:418785..420387 + |
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