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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:433869..435942+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004695-T1 ID=KJC3_004695-T1|Name=KJC3_004695-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2074bp|location=Sequence derived from alignment at ch4:433869..435942+ (Aspergillus niger KJC3)
TTTCACGAGTATAGGTATCATTTCTCTTTTTGAAATCTATCTTGGATAAG
TGCAAGGGGATACAGGTCATCACATCGTCAGACAGCAGTTGGAACGATTG
TTGATCCGCATGTTTTATAAACTCGGAACAGGTCTGTGTGAAATCTTGCT
TCATCATTGAAGGATGACTTGTATGGGTGTGGAACGCTGCAAATGAAAAA
ACATGCAATAAACAAAATGGAAAATTGAATATTGGCGACATTTTTGCAAG
TCTGCTGAGCAGCTGACGGAATGCATTAATCCCGTGGCTTGAGAGCTGTC
AGATGACTGTTTCTTAAACAGTCACCATAGCGAGTAACATAGATATCTGA
GTTGATTCAATCCCGCTGCAGGGAAGAATATTAACGCTGTTAGGAAGAAG
GAATGAGAAGAAAACAAAGGGCGGCTTTATATGATGAAAATCTCCCCCGG
TTCGCTAACAGGCCAATCATCGGCAGCGCAGAGATTAATCCATCTCCAGC
TGTTTGCGCTGTTTGCGGCATTTGCGCTGTTTGGTTTCATTTCGCATCAA
AAAAATGTAGAGGGCAATTTTCTGACGCAGGCTACAGCGTCGACGTTTTT
TCAGTGTTGACTTTCACTCTTTTTGTTGTTCGGGGGTTTTATCTTGCCTT
GGGAATTTTCTGGAAGGCAGACGTTGGCTTTTCTGTGACGCTTCTTTTGT
CCTGTTCACCGGTATGAATCCCCTCTCTTCATGATCGTGATCGTCTCTGT
CCGATTAGGAAATAAGTAAATTCTGTGTCAATCCATACTAACGAACTTTG
GATCGATAGACTATACCCCTCCACCCCTCACTCCATATTCTACCGTCACA
ATGGTCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAAGTGTGTAGGC
GATCGCATTGGGCTGCTCATCTGGGGCTGGATCCAATTTTTTCAAGGCCA
TATCCTAAATCGCTAATGCGTGCCTAGCTCCCCAAAAGAATGTCTACCAG
AATGGGGTGAGAACCACAGGCCGGGCCTTCCACTCTCCCAACTGGCGTGT
GAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCTGCCGGATCCCCCG
GTCCCAAGACAAGCACCTCGAGACTCGCATTCAGCAGACCCAGCCCGCAT
GTGCCCCAGGCTATTTCGGAGGGTCGCCGTCTCTATGTGGGCAACATGCC
CTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTCGATGCGGCTGAGT
TCCGAATGTATGGATTCTTTGAACTGAAGACAACCGTGGGAGTTCCAAAC
TGAGTGCTTAATAGCGAGCGTATCGACATCGCCATCGATCCTTTCACCGG
CCGTAACCCCTCATACTGTTTCGTCGATCTGGAGACCAAGGAGCTGGCTG
AGCGCGCCATGACGGAATTGGACGGTCGGGACATGCTTGGTCGTCCCGTC
AAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGGCTCAGCAACA
GCAGCAACAGCAGCAGCGCTCCGATGCCTCCCCTCGTGAGACGCGGTCTT
CTCCGTTCAGCATGGACCGTTGGCGCCGCGGTGACGAGGCCCAGCCCCCG
CGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCACCCCCTCAAA
CAGTGATCCCAGCCGTCGCCTCTATGTTGGCGGCCTGCCGAGGTTGACGG
ACCAGGAAGCCATCACCAGCAACATGACCAACTTCTTCAAGGATTACAAT
GTGTATGGATCAGTCTTGAGTGCGTTGATTGTTCGGGATATGCTAACCTG
GCTGTATAGTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGA
GGTTCGAGCCCGGTGACCACTACTACCTGTTCGTCGATTTCAGCAGCGTC
GAGGAGGCTGAGAACGCCATGAACGCTCTGAACCGGGCGGAAGGTCCCTG
GGGTGCCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAG
AGCGGAGACCCAAGTGGTCGTCCAGCCGGGACGAAGCCACCCCGGCTGCT
GAGGAGGTTGCAGTCGCTGCATAG back to topCoding sequence (CDS) from alignment at ch4:433869..435942+ >KJC3_004695-T1 ID=KJC3_004695-T1|Name=KJC3_004695-T1|organism=Aspergillus niger KJC3|type=CDS|length=4092bp|location=Sequence derived from alignment at ch4:433869..435942+ (Aspergillus niger KJC3)
ATGGTCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAACTCCCCAAAA
GAATGTCTACCAGAATGGGGTGAGAACCACAGGCCGGGCCTTCCACTCTC
CCAACTGGCGTGTGAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCT
GCCGGATCCCCCGGTCCCAAGACAAGCACCTCGAGACTCGCATTCAGCAG
ACCCAGCCCGCATGTGCCCCAGGCTATTTCGGAGGGTCGCCGTCTCTATG
TGGGCAACATGCCCTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTC
GATGCGGCTGAGTTCCGAATCGAGCGTATCGACATCGCCATCGATCCTTT
CACCGGCCGTAACCCCTCATACTGTTTCGTCGATCTGGAGACCAAGGAGC
TGGCTGAGCGCGCCATGACGGAATTGGACGGTCGGGACATGCTTGGTCGT
CCCGTCAAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGGCTCA
GCAACAGCAGCAACAGCAGCAGCGCTCCGATGCCTCCCCTCGTGAGACGC
GGTCTTCTCCGTTCAGCATGGACCGTTGGCGCCGCGGTGACGAGGCCCAG
CCCCCGCGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCACCCC
CTCAAACAGTGATCCCAGCCGTCGCCTCTATGTTGGCGGCCTGCCGAGGT
TGACGGACCAGGAAGCCATCACCAGCAACATGACCAACTTCTTCAAGGAT
TACAATGTTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGAG
GTTCGAGCCCGGTGACCACTACTACCTGTTCGTCGATTTCAGCAGCGTCG
AGGAGGCTGAGAACGCCATGAACGCTCTGAACCGGGCGGAAGGTCCCTGG
GGTGCCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAGA
GCGGAGACCCAAGTGGTCGTCCAGCCGGGACGAAGCCACCCCGGCTGCTG
AGGAGGTTGCAGTCGCTGCATAGATGGTCGACGCTCCCGAGAGCCCGAGG
CCCCAGGAACAAACTCCCCAAAAGAATGTCTACCAGAATGGGGTGAGAAC
CACAGGCCGGGCCTTCCACTCTCCCAACTGGCGTGTGAAGCGCGAAGAGA
GCCCTAGTGGGCAGAACGCCGCTGCCGGATCCCCCGGTCCCAAGACAAGC
ACCTCGAGACTCGCATTCAGCAGACCCAGCCCGCATGTGCCCCAGGCTAT
TTCGGAGGGTCGCCGTCTCTATGTGGGCAACATGCCCTACACGGCCAAGT
CGGAGGATGTGCAGGCTCTCTTCGATGCGGCTGAGTTCCGAATCGAGCGT
ATCGACATCGCCATCGATCCTTTCACCGGCCGTAACCCCTCATACTGTTT
CGTCGATCTGGAGACCAAGGAGCTGGCTGAGCGCGCCATGACGGAATTGG
ACGGTCGGGACATGCTTGGTCGTCCCGTCAAGATCAAGCCCGGTGTCGTG
AAGACCCAGAGTGAACGGGCTCAGCAACAGCAGCAACAGCAGCAGCGCTC
CGATGCCTCCCCTCGTGAGACGCGGTCTTCTCCGTTCAGCATGGACCGTT
GGCGCCGCGGTGACGAGGCCCAGCCCCCGCGCACTCCCTCGAAGACCACT
ACCACCACCACCGCCAGCACCCCCTCAAACAGTGATCCCAGCCGTCGCCT
CTATGTTGGCGGCCTGCCGAGGTTGACGGACCAGGAAGCCATCACCAGCA
ACATGACCAACTTCTTCAAGGATTACAATGTTGAGAATGTCAGCAAGCTG
TTCGCTCCCCACCCCGCGAAGAGGTTCGAGCCCGGTGACCACTACTACCT
GTTCGTCGATTTCAGCAGCGTCGAGGAGGCTGAGAACGCCATGAACGCTC
TGAACCGGGCGGAAGGTCCCTGGGGTGCCGTCCTCAGGGTTCAGAGAGCC
CGTGGAGAGAACAACTCGCAAGAGCGGAGACCCAAGTGGTCGTCCAGCCG
GGACGAAGCCACCCCGGCTGCTGAGGAGGTTGCAGTCGCTGCATAGATGG
TCGACGCTCCCGAGAGCCCGAGGCCCCAGGAACAAACTCCCCAAAAGAAT
GTCTACCAGAATGGGGTGAGAACCACAGGCCGGGCCTTCCACTCTCCCAA
CTGGCGTGTGAAGCGCGAAGAGAGCCCTAGTGGGCAGAACGCCGCTGCCG
GATCCCCCGGTCCCAAGACAAGCACCTCGAGACTCGCATTCAGCAGACCC
AGCCCGCATGTGCCCCAGGCTATTTCGGAGGGTCGCCGTCTCTATGTGGG
CAACATGCCCTACACGGCCAAGTCGGAGGATGTGCAGGCTCTCTTCGATG
CGGCTGAGTTCCGAATCGAGCGTATCGACATCGCCATCGATCCTTTCACC
GGCCGTAACCCCTCATACTGTTTCGTCGATCTGGAGACCAAGGAGCTGGC
TGAGCGCGCCATGACGGAATTGGACGGTCGGGACATGCTTGGTCGTCCCG
TCAAGATCAAGCCCGGTGTCGTGAAGACCCAGAGTGAACGGGCTCAGCAA
CAGCAGCAACAGCAGCAGCGCTCCGATGCCTCCCCTCGTGAGACGCGGTC
TTCTCCGTTCAGCATGGACCGTTGGCGCCGCGGTGACGAGGCCCAGCCCC
CGCGCACTCCCTCGAAGACCACTACCACCACCACCGCCAGCACCCCCTCA
AACAGTGATCCCAGCCGTCGCCTCTATGTTGGCGGCCTGCCGAGGTTGAC
GGACCAGGAAGCCATCACCAGCAACATGACCAACTTCTTCAAGGATTACA
ATGTTGAGAATGTCAGCAAGCTGTTCGCTCCCCACCCCGCGAAGAGGTTC
GAGCCCGGTGACCACTACTACCTGTTCGTCGATTTCAGCAGCGTCGAGGA
GGCTGAGAACGCCATGAACGCTCTGAACCGGGCGGAAGGTCCCTGGGGTG
CCGTCCTCAGGGTTCAGAGAGCCCGTGGAGAGAACAACTCGCAAGAGCGG
AGACCCAAGTGGTCGTCCAGCCGGGACGAAGCCACCCCGGCTGCTGAGGA
GGTTGCAGTCGCTGCATAGATGGTCGACGCTCCCGAGAGCCCGAGGCCCC
AGGAACAAACTCCCCAAAAGAATGTCTACCAGAATGGGGTGAGAACCACA
GGCCGGGCCTTCCACTCTCCCAACTGGCGTGTGAAGCGCGAAGAGAGCCC
TAGTGGGCAGAACGCCGCTGCCGGATCCCCCGGTCCCAAGACAAGCACCT
CGAGACTCGCATTCAGCAGACCCAGCCCGCATGTGCCCCAGGCTATTTCG
GAGGGTCGCCGTCTCTATGTGGGCAACATGCCCTACACGGCCAAGTCGGA
GGATGTGCAGGCTCTCTTCGATGCGGCTGAGTTCCGAATCGAGCGTATCG
ACATCGCCATCGATCCTTTCACCGGCCGTAACCCCTCATACTGTTTCGTC
GATCTGGAGACCAAGGAGCTGGCTGAGCGCGCCATGACGGAATTGGACGG
TCGGGACATGCTTGGTCGTCCCGTCAAGATCAAGCCCGGTGTCGTGAAGA
CCCAGAGTGAACGGGCTCAGCAACAGCAGCAACAGCAGCAGCGCTCCGAT
GCCTCCCCTCGTGAGACGCGGTCTTCTCCGTTCAGCATGGACCGTTGGCG
CCGCGGTGACGAGGCCCAGCCCCCGCGCACTCCCTCGAAGACCACTACCA
CCACCACCGCCAGCACCCCCTCAAACAGTGATCCCAGCCGTCGCCTCTAT
GTTGGCGGCCTGCCGAGGTTGACGGACCAGGAAGCCATCACCAGCAACAT
GACCAACTTCTTCAAGGATTACAATGTTGAGAATGTCAGCAAGCTGTTCG
CTCCCCACCCCGCGAAGAGGTTCGAGCCCGGTGACCACTACTACCTGTTC
GTCGATTTCAGCAGCGTCGAGGAGGCTGAGAACGCCATGAACGCTCTGAA
CCGGGCGGAAGGTCCCTGGGGTGCCGTCCTCAGGGTTCAGAGAGCCCGTG
GAGAGAACAACTCGCAAGAGCGGAGACCCAAGTGGTCGTCCAGCCGGGAC
GAAGCCACCCCGGCTGCTGAGGAGGTTGCAGTCGCTGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:433869..435942 + |
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