You are here

Home

KJC3_004717-T2, KJC3_004717-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004717-T2
Unique NameKJC3_004717-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:494769..497729-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004717-T2 ID=KJC3_004717-T2|Name=KJC3_004717-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2961bp|location=Sequence derived from alignment at ch4:494769..497729- (Aspergillus niger KJC3)
CATCCATCAATCTCTCGTCGCTGTCTGGTGGAGTCATCCACCCCCATTAT
ATCTTGGTTATCCCCAATACCCTTTCCTCTCACGTCTCGACCATTCAGAG
GGCTGCGTCTGCGCCCTGCCTACCTTTCTTCTGAGCAGAGCCAAGGTCCC
TTGCTCTCTGCCACCCGCGACCTCAGCTTCCCGTCGTCGACTATCGTGCC
AACAAAATGGAGGACAACCAGGTTATGTCTGGTGGCGCCACTGAGGATGC
TCAGGCTATTAACGTGGCACAGGATGCCCCAGGTGATGTGATTACCACTT
CCGGTGCGTTCACCCTCTTTCCGCCCCTAAGGGGATTGGAACTTGCCAAC
ACTCGCATCATGACACCCAGGATCGCAATCGCATCAGGGATCTCCCGAGA
AAAAGACCGAGACTGTTTCGGATACTGATAATCCGCTAGATGCACCCGCT
TCACCCAAGCCCCAGAATGCCGATGGCGAACCCGAGGATGAAGAGATGGG
CGGCACCGAGACGGAGACGAAGAAGGAGACCGATGGAGGCGAGGATCTCG
CTGATGTTGCCGCACAGTCCGGCGCTGAAGGTGCTACAGATGAACAGCCG
GCGCAGGCCAAGGCATCCATTGAGGCCTCTGCGCGCTCACATCTCGTTTC
GCAAACCCACGCCATCATCCTCCCCAGCTACTCTACCTGGTTCGACATGC
ACCTCATCCACCCGATCGAGAAGAAGGCTCTGGCGGAGTTCTTCAACGGC
AGAAACCGTAGCAAGACCCCTGCAGTTTACAAGGATTACCGTGATTTCAT
GATCAACACCTACCGTTTGAACCCCATTGAGTACCTCACAGTCACTGCGT
GCCGCCGCAACCTTGCTGGTGACGTGTGTGCGATCATGCGTGTGCACTCC
TTCCTGGAACAATGGGGTCTCATCAACTACCAGGTAAGTATCTGCCCGGT
GCCGACCTCAGGCCTGAGGTGCTGATACCTTGACTCAGGTGGATCCCCAA
ACGCGTCCGTCCAACATCGGCCCCCCTTTCACTGGCCATTTCCGAGTGGT
CGCCGATACCCCCAGAGGCCTCCAGCCATTCCAGCCCGGACCCAACCACT
TTGTCAAGCCTGGAAAGCCTCTGCCAGCTACGGATCGTGCAGCATCAGCG
ACCCCAGCTGCCAAGGCCGACCTGAACCTCGAGATTCGTCGCAATGTGTA
TGATGATAAGGGCAAGGAGATCACACCTGCCACGGAGGACAAAGACAAGC
AGACCAACGGCGAAGGCTCAACGAACGGTACGACGGGCGATTCGACCAAG
GCGATGGAGAGCGCTTCCAAGGAGCCGAGAAAGAAGTTCAACTGCTTCTC
TTGCGGCATCGATTGTACTCGCCTCAGATTCCACTATGCCAAGGCAACAC
CCGCAACCGCCAACCCAGCCGCACCTGACACCAAGTACGACCTGTGCCCC
AACTGCTTCCTGCAGGGCCGGATGCCCTCCAGCCACAGTGCCTCAGACTT
CGTCAAGCTTGAAGACAGCCCATACTCGATAGCCCCCGATCGGGATGCGC
CATGGTCGGATTCGGAGCTTGTTCTGCTGCTGGAGGGATTGGAAAACTTT
GACGACAACTGGGAACAAATTGCCACTCACGTTGGATCCAGGACAAAGGA
GGAGTGCGTGATGAAGTTCTTGCAGCTGGAGATCGAAGACAAGTATCTGG
ATGACATGCCTGAAGTTCGGGCAGGCAGTGGGCGGGAGCCTATCAGCCAG
GCCGAGAACCCTGTCCTGTCCGTTGTCGCTTTCCTTGCACAGATGGCTGA
GCCTGCAGTGGCCGCGGCTGCCGCCGGCCGTTCCGTGGAGGAGATCCGCA
AGGAATTGAGAAAGCAGCTTGAGAAGGGCTCTGGAGCTCAAGACAAGGGC
AAGGAGAAGGAAGGCAGTGCGACAGTCAAGGCTGAGGATTCCATGGAAGT
GGACTCTGCTCGTGAGGAAGCAACCGAGCAAGCCGTCGAGGTTGCTGGTT
CCGACAAGGGCAAGGCTTCCCTTCCCACCGTGGCTCTTGCCGCTTCTGCC
GCTCGTGCTGGCGCCCTGGCTTCTCACGAAGAACGTGAAATGACCCGCCT
GGTTTCCTCGGCCGTCAATGTTACCCTCCAGAAGTTCGAGATTAAGCTGC
AGCAGTTCAATGAGATGGAGGAGATCATCGAAGCCGAACGCCGGGAACTC
GAGCTTGCTCGTCAGCAGCTCTTCCTCGACCGCATGGCCTTTAAGAAGCG
CGTCAAGGAGGTCCAGGACACCCTGCAGGCCGTCAGTCTTCGAGGCCCTG
GTGAGGAGACCAACAACATGCTTGCCGATGCTGCTACGACTGGGATTGGC
AACCGCTATAACTTCCAACCGGCAGGAGGTGACGTTAGAGGCGTGCAGCC
ACTGAGTGCAGAAGCAGGCGCTGACTACAAGACGTTGGACCTGTAATGTA
CCTATGAAAAGGGAATGTTCCACCAATGATGACATGCTTTCTTCCAACAG
CTGGAGAATTCGATAACTCTTTCCTTTCATTTCTAACGACCGGGCGAAGG
AGCCGTACGGGGTTGCTTTTCAATAATATCCATTGTATTGTACAATATCA
TAGGGCTGGGCAGGTGGAGCTATGAAGAAGAATGAATAGTCAGGATGTAT
CTGACACGGACAGACAAGGTGGTAGTAAAGTGATGTGTGATGGATTGATG
GATGGCTTGCACTATGATCTGGTCTGATTATCTTCTTTTTTTTCCTTTTA
CATTCGATTTACAATCCGCTAGGTAGGAAAAGGCGCAAATGTTTTGGGAG
TTCAGAGCTAAGTATTGTACGCGTGTGCCTTGCAAATCGATGTTCTATTG
TTGAAATCACTCCTTGTCTTCGCATGTTAGTAGTTTTTTTTTGGGGTTCG
GTTTCTAGATAGGCCTGGAGGTGGTTAGAAACGCCATTGTAGTCTTCTAT
GTCAACATTGC
back to top

Coding sequence (CDS) from alignment at ch4:494769..497729-

>KJC3_004717-T2 ID=KJC3_004717-T2|Name=KJC3_004717-T2|organism=Aspergillus niger KJC3|type=CDS|length=3792bp|location=Sequence derived from alignment at ch4:494769..497729- (Aspergillus niger KJC3)
GTGGATCCCCAAACGCGTCCGTCCAACATCGGCCCCCCTTTCACTGGCCA
TTTCCGAGTGGTCGCCGATACCCCCAGAGGCCTCCAGCCATTCCAGCCCG
GACCCAACCACTTTGTCAAGCCTGGAAAGCCTCTGCCAGCTACGGATCGT
GCAGCATCAGCGACCCCAGCTGCCAAGGCCGACCTGAACCTCGAGATTCG
TCGCAATGTGTATGATGATAAGGGCAAGGAGATCACACCTGCCACGGAGG
ACAAAGACAAGCAGACCAACGGCGAAGGCTCAACGAACGGTACGACGGGC
GATTCGACCAAGGCGATGGAGAGCGCTTCCAAGGAGCCGAGAAAGAAGTT
CAACTGCTTCTCTTGCGGCATCGATTGTACTCGCCTCAGATTCCACTATG
CCAAGGCAACACCCGCAACCGCCAACCCAGCCGCACCTGACACCAAGTAC
GACCTGTGCCCCAACTGCTTCCTGCAGGGCCGGATGCCCTCCAGCCACAG
TGCCTCAGACTTCGTCAAGCTTGAAGACAGCCCATACTCGATAGCCCCCG
ATCGGGATGCGCCATGGTCGGATTCGGAGCTTGTTCTGCTGCTGGAGGGA
TTGGAAAACTTTGACGACAACTGGGAACAAATTGCCACTCACGTTGGATC
CAGGACAAAGGAGGAGTGCGTGATGAAGTTCTTGCAGCTGGAGATCGAAG
ACAAGTATCTGGATGACATGCCTGAAGTTCGGGCAGGCAGTGGGCGGGAG
CCTATCAGCCAGGCCGAGAACCCTGTCCTGTCCGTTGTCGCTTTCCTTGC
ACAGATGGCTGAGCCTGCAGTGGCCGCGGCTGCCGCCGGCCGTTCCGTGG
AGGAGATCCGCAAGGAATTGAGAAAGCAGCTTGAGAAGGGCTCTGGAGCT
CAAGACAAGGGCAAGGAGAAGGAAGGCAGTGCGACAGTCAAGGCTGAGGA
TTCCATGGAAGTGGACTCTGCTCGTGAGGAAGCAACCGAGCAAGCCGTCG
AGGTTGCTGGTTCCGACAAGGGCAAGGCTTCCCTTCCCACCGTGGCTCTT
GCCGCTTCTGCCGCTCGTGCTGGCGCCCTGGCTTCTCACGAAGAACGTGA
AATGACCCGCCTGGTTTCCTCGGCCGTCAATGTTACCCTCCAGAAGTTCG
AGATTAAGCTGCAGCAGTTCAATGAGATGGAGGAGATCATCGAAGCCGAA
CGCCGGGAACTCGAGCTTGCTCGTCAGCAGCTCTTCCTCGACCGCATGGC
CTTTAAGAAGCGCGTCAAGGAGGTCCAGGACACCCTGCAGGCCGTCAGTC
TTCGAGGCCCTGGTGAGGAGACCAACAACATGCTTGCCGATGCTGCTACG
ACTGGGATTGGCAACCGCTATAACTTCCAACCGGCAGGAGGTGACGTTAG
AGGCGTGCAGCCACTGAGTGCAGAAGCAGGCGCTGACTACAAGACGTTGG
ACCTGTAAATGGGCGGCACCGAGACGGAGACGAAGAAGGAGACCGATGGA
GGCGAGGATCTCGCTGATGTTGCCGCACAGTCCGGCGCTGAAGGTGCTAC
AGATGAACAGCCGGCGCAGGCCAAGGCATCCATTGAGGCCTCTGCGCGCT
CACATCTCGTTTCGCAAACCCACGCCATCATCCTCCCCAGCTACTCTACC
TGGTTCGACATGCACCTCATCCACCCGATCGAGAAGAAGGCTCTGGCGGA
GTTCTTCAACGGCAGAAACCGTAGCAAGACCCCTGCAGTTTACAAGGATT
ACCGTGATTTCATGATCAACACCTACCGTTTGAACCCCATTGAGTACCTC
ACAGTCACTGCGTGCCGCCGCAACCTTGCTGGTGACGTGTGTGCGATCAT
GCGTGTGCACTCCTTCCTGGAACAATGGGGTCTCATCAACTACCAGGTGG
ATCCCCAAACGCGTCCGTCCAACATCGGCCCCCCTTTCACTGGCCATTTC
CGAGTGGTCGCCGATACCCCCAGAGGCCTCCAGCCATTCCAGCCCGGACC
CAACCACTTTGTCAAGCCTGGAAAGCCTCTGCCAGCTACGGATCGTGCAG
CATCAGCGACCCCAGCTGCCAAGGCCGACCTGAACCTCGAGATTCGTCGC
AATGTGTATGATGATAAGGGCAAGGAGATCACACCTGCCACGGAGGACAA
AGACAAGCAGACCAACGGCGAAGGCTCAACGAACGGTACGACGGGCGATT
CGACCAAGGCGATGGAGAGCGCTTCCAAGGAGCCGAGAAAGAAGTTCAAC
TGCTTCTCTTGCGGCATCGATTGTACTCGCCTCAGATTCCACTATGCCAA
GGCAACACCCGCAACCGCCAACCCAGCCGCACCTGACACCAAGTACGACC
TGTGCCCCAACTGCTTCCTGCAGGGCCGGATGCCCTCCAGCCACAGTGCC
TCAGACTTCGTCAAGCTTGAAGACAGCCCATACTCGATAGCCCCCGATCG
GGATGCGCCATGGTCGGATTCGGAGCTTGTTCTGCTGCTGGAGGGATTGG
AAAACTTTGACGACAACTGGGAACAAATTGCCACTCACGTTGGATCCAGG
ACAAAGGAGGAGTGCGTGATGAAGTTCTTGCAGCTGGAGATCGAAGACAA
GTATCTGGATGACATGCCTGAAGTTCGGGCAGGCAGTGGGCGGGAGCCTA
TCAGCCAGGCCGAGAACCCTGTCCTGTCCGTTGTCGCTTTCCTTGCACAG
ATGGCTGAGCCTGCAGTGGCCGCGGCTGCCGCCGGCCGTTCCGTGGAGGA
GATCCGCAAGGAATTGAGAAAGCAGCTTGAGAAGGGCTCTGGAGCTCAAG
ACAAGGGCAAGGAGAAGGAAGGCAGTGCGACAGTCAAGGCTGAGGATTCC
ATGGAAGTGGACTCTGCTCGTGAGGAAGCAACCGAGCAAGCCGTCGAGGT
TGCTGGTTCCGACAAGGGCAAGGCTTCCCTTCCCACCGTGGCTCTTGCCG
CTTCTGCCGCTCGTGCTGGCGCCCTGGCTTCTCACGAAGAACGTGAAATG
ACCCGCCTGGTTTCCTCGGCCGTCAATGTTACCCTCCAGAAGTTCGAGAT
TAAGCTGCAGCAGTTCAATGAGATGGAGGAGATCATCGAAGCCGAACGCC
GGGAACTCGAGCTTGCTCGTCAGCAGCTCTTCCTCGACCGCATGGCCTTT
AAGAAGCGCGTCAAGGAGGTCCAGGACACCCTGCAGGCCGTCAGTCTTCG
AGGCCCTGGTGAGGAGACCAACAACATGCTTGCCGATGCTGCTACGACTG
GGATTGGCAACCGCTATAACTTCCAACCGGCAGGAGGTGACGTTAGAGGC
GTGCAGCCACTGAGTGCAGAAGCAGGCGCTGACTACAAGACGTTGGACCT
GTAAATGGGCGGCACCGAGACGGAGACGAAGAAGGAGACCGATGGAGGCG
AGGATCTCGCTGATGTTGCCGCACAGTCCGGCGCTGAAGGTGCTACAGAT
GAACAGCCGGCGCAGGCCAAGGCATCCATTGAGGCCTCTGCGCGCTCACA
TCTCGTTTCGCAAACCCACGCCATCATCCTCCCCAGCTACTCTACCTGGT
TCGACATGCACCTCATCCACCCGATCGAGAAGAAGGCTCTGGCGGAGTTC
TTCAACGGCAGAAACCGTAGCAAGACCCCTGCAGTTTACAAGGATTACCG
TGATTTCATGATCAACACCTACCGTTTGAACCCCATTGAGTACCTCACAG
TCACTGCGTGCCGCCGCAACCTTGCTGGTGACGTGTGTGCGATCATGCGT
GTGCACTCCTTCCTGGAACAATGGGGTCTCATCAACTACCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004717KJC3_004717Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004717-T2KJC3_004717-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004717-T2.cdsKJC3_004717-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004717-T2.utr3p1KJC3_004717-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004717-T2.exon2KJC3_004717-T2.exon2Aspergillus niger KJC3exon
KJC3_004717-T2.exon1KJC3_004717-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004717-T2.utr5p1KJC3_004717-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009057
DBxrefInterPro:IPR041984
DBxrefInterPro:IPR017884
DBxrefInterPro:IPR007526
DBxrefInterPro:IPR032451
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR001005
DBxrefPFAM:PF16495
DBxrefPFAM:PF04433
DBxrefPFAM:PF13921
DBxrefPFAM:PF00249
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:494769..497729 -
Powered by Drupal