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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:611115..613388- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004756-T1 ID=KJC3_004756-T1|Name=KJC3_004756-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2274bp|location=Sequence derived from alignment at ch4:611115..613388- (Aspergillus niger KJC3)
TTGGCAATGATGCCCGAAAGATCTTTTTTTATCTTCGAGAGGTGCGATGC
TCACAACTCCCCTCTCCCGACCTGTGTTGGCAACGTAATTCACCCCGAAC
TCACCTTTTCGTCCGCCTTGCTCTACGCCCATTTCCTCTCGACCGTCATC
CCATTCTTGTCCGGGGTGGCGTCCTTCCGTTAAACCACAGTCGCTCGCCG
CATCCCAACCCCCGTGGTCTGGTCCGCACCACGATCCGGTGGGTTGCGGT
ATTCTTGCAATGAGCTTGACCTCGCGCGTCTTGGGCCTGTTCACGACGAC
AGAGACACCGTCTACCGACCCCCCTTCTCCTGAGTCGGCCTCTCAGTTCC
CCAACGTTGCTTCCGCTAGCAGCGACCATGTCTTTCATTCCGCCGGCCCG
ATAAGCGCAACCAGCGACCATAATGCTCAGAAGGCTGCGTCCCTTGCGGA
CGAGGAGGAGCCTCGGCCTCCCTATCTACATGTATGTTTGTGTTGGTCTG
GTGGAGCGCGACCCTGTTCGCGCAGGTTCCGTTACTACTCGGTATAGCTT
CCAGATCGTTGGTTCTGACCATTGTTGCTTCAATAGGCTATGCTGGCTGG
AGGTACCGGTGGTACCTGCGGTGACATGCTTATGCATTCGTTAGATACGG
TGAAGACTCGACAGCAAGGCGATCCCCACTTCCCTCCGAAATATACCTCC
ATGACCTCGTCGTATGCGACTATCTATCGACAAGAGGGTTTCTTCCGTGG
TCTGTATGGTGGTGTTACGCCGGCGCTCTTCGGGTCCTTTCCTGGAACGG
TCATCTTCTTTGGTGTTTATGAGTTCACCAAGCGGAAGATGCTGGACTCT
GGGATTAACCCCAATATTGCGTATCTGTCTGGAGGTAAGGGTGTTTTTGT
GGCTTCACCTTGGATGGGTGATACTAACTCGGTTGCTGCTAGGCTTCTTC
GCTGATTTGGCTGCCTCCATCGTATACGTTCCCTCCGAGGTTTTGAAGAC
GCGACTGCAGTTGCAGGGACGCTACAACAACCCGCATTTCAACTCGGGAT
ACAACTACCGCTCGACAACGGATGCGCTACGCACGATTGTTCGCCAGGAA
GGGTTCTCCGCCCTCTTCTACGGATACCGGGCCACCATCTACCGTGACCT
TCCATTCTCGGCCCTGCAGTTCGCCTTCTACGAACAAGAACAGCGGTTGG
CGAAAGAATGGGTGGGCTCGCGAGAAATCGGACTGCCCATGGAGATCTTG
ACGGCTGTCACGGCTGGTGGAATGGCAGGTGTTATGACCTGTCCGATGGA
CGTTGTCAAGACGCGGATCCAGACGCAGAAGAACCCGGAAAGCTCGAGCT
CGACCAAGTCGTCGGGTGAGCCTGCGTCGACCAAGGAGAGCCCGCGCCAG
CATACGTCATCGCATACGACGTCCAACCTGCGCACACACTCGCGACCCAT
CTCGACGTCTGGAGCATCGACGTCGGTCGCGCCGCCCGGGGCTCCCCGTC
TGGATACCTCGTCTTTCTTCACTGGCCTGAAGATGATCTACCAGACCGAG
GGAATCGCGGGATGGTTCCGCGGAGTCGGACCCCGCGGAGTGTGGACCAG
TATTCAGAGTGGAACAATGCTGGTTATGTACCAGTACCTTTTGAAGAAAC
TGGAAGCTTACCAGGGGGTGGAAGACCTGAGCCCGCTGTAAGGGTGAGCT
TCCGCGACTTGCATTCAGGATTTGACATCTGCGACCCGATAGATTACCAT
CGGCGGGTGTCTGGGACACAGGGTGCTGTGTTCGCTGTAGATAAGAAAAG
AGCGCACCACAACCGGAGCTTGAGCATGAGCATAGTATGGGCATGAGCAT
GAGCATTATAGACGGCTATGTTGGAAGGGCGACCGGACGGGAGTGGCATG
ATTTCTTACTTTGTTTTCTTCTTATTATCTTACTTTTCGGCCTCTTGTGT
TCTAATTCTTGGATTCCCATTCCCCTCCTGTCGTTTTCCCCGCATGTTGA
GAGCATGATTGCATGATTCGGGTGGTTGTGGTTTCGGGCGCGCATTTTGT
GTATAGGAGGAAAGACATTCATCTCATGTACGGATACTTACCATTGATAG
ACATTAGACAAAGGCTGGTAATGAAGCATTGTATATTATTCACTCAAGAG
AGGACAGAGTTTACTAAGAACCAGAGATGATGCCCAGCCAAAACAAAGCG
ATCGACAAAGAGAAACCCGCCAGTTGCCGAGGGGCGCGAAGAGAAAAGTA
AACAAAGCCGGATGCGGTCAGAGC back to topCoding sequence (CDS) from alignment at ch4:611115..613388- >KJC3_004756-T1 ID=KJC3_004756-T1|Name=KJC3_004756-T1|organism=Aspergillus niger KJC3|type=CDS|length=3807bp|location=Sequence derived from alignment at ch4:611115..613388- (Aspergillus niger KJC3)
GCTTCTTCGCTGATTTGGCTGCCTCCATCGTATACGTTCCCTCCGAGGTT
TTGAAGACGCGACTGCAGTTGCAGGGACGCTACAACAACCCGCATTTCAA
CTCGGGATACAACTACCGCTCGACAACGGATGCGCTACGCACGATTGTTC
GCCAGGAAGGGTTCTCCGCCCTCTTCTACGGATACCGGGCCACCATCTAC
CGTGACCTTCCATTCTCGGCCCTGCAGTTCGCCTTCTACGAACAAGAACA
GCGGTTGGCGAAAGAATGGGTGGGCTCGCGAGAAATCGGACTGCCCATGG
AGATCTTGACGGCTGTCACGGCTGGTGGAATGGCAGGTGTTATGACCTGT
CCGATGGACGTTGTCAAGACGCGGATCCAGACGCAGAAGAACCCGGAAAG
CTCGAGCTCGACCAAGTCGTCGGGTGAGCCTGCGTCGACCAAGGAGAGCC
CGCGCCAGCATACGTCATCGCATACGACGTCCAACCTGCGCACACACTCG
CGACCCATCTCGACGTCTGGAGCATCGACGTCGGTCGCGCCGCCCGGGGC
TCCCCGTCTGGATACCTCGTCTTTCTTCACTGGCCTGAAGATGATCTACC
AGACCGAGGGAATCGCGGGATGGTTCCGCGGAGTCGGACCCCGCGGAGTG
TGGACCAGTATTCAGAGTGGAACAATGCTGGTTATGTACCAGTACCTTTT
GAAGAAACTGGAAGCTTACCAGGGGGTGGAAGACCTGAGCCCGCTGTAAG
CTATGCTGGCTGGAGGTACCGGTGGTACCTGCGGTGACATGCTTATGCAT
TCGTTAGATACGGTGAAGACTCGACAGCAAGGCGATCCCCACTTCCCTCC
GAAATATACCTCCATGACCTCGTCGTATGCGACTATCTATCGACAAGAGG
GTTTCTTCCGTGGTCTGTATGGTGGTGTTACGCCGGCGCTCTTCGGGTCC
TTTCCTGGAACGGTCATCTTCTTTGGTGTTTATGAGTTCACCAAGCGGAA
GATGCTGGACTCTGGGATTAACCCCAATATTGCGTATCTGTCTGGAGATG
AGCTTGACCTCGCGCGTCTTGGGCCTGTTCACGACGACAGAGACACCGTC
TACCGACCCCCCTTCTCCTGAGTCGGCCTCTCAGTTCCCCAACGTTGCTT
CCGCTAGCAGCGACCATGTCTTTCATTCCGCCGGCCCGATAAGCGCAACC
AGCGACCATAATGCTCAGAAGGCTGCGTCCCTTGCGGACGAGGAGGAGCC
TCGGCCTCCCTATCTACATGCTTCTTCGCTGATTTGGCTGCCTCCATCGT
ATACGTTCCCTCCGAGGTTTTGAAGACGCGACTGCAGTTGCAGGGACGCT
ACAACAACCCGCATTTCAACTCGGGATACAACTACCGCTCGACAACGGAT
GCGCTACGCACGATTGTTCGCCAGGAAGGGTTCTCCGCCCTCTTCTACGG
ATACCGGGCCACCATCTACCGTGACCTTCCATTCTCGGCCCTGCAGTTCG
CCTTCTACGAACAAGAACAGCGGTTGGCGAAAGAATGGGTGGGCTCGCGA
GAAATCGGACTGCCCATGGAGATCTTGACGGCTGTCACGGCTGGTGGAAT
GGCAGGTGTTATGACCTGTCCGATGGACGTTGTCAAGACGCGGATCCAGA
CGCAGAAGAACCCGGAAAGCTCGAGCTCGACCAAGTCGTCGGGTGAGCCT
GCGTCGACCAAGGAGAGCCCGCGCCAGCATACGTCATCGCATACGACGTC
CAACCTGCGCACACACTCGCGACCCATCTCGACGTCTGGAGCATCGACGT
CGGTCGCGCCGCCCGGGGCTCCCCGTCTGGATACCTCGTCTTTCTTCACT
GGCCTGAAGATGATCTACCAGACCGAGGGAATCGCGGGATGGTTCCGCGG
AGTCGGACCCCGCGGAGTGTGGACCAGTATTCAGAGTGGAACAATGCTGG
TTATGTACCAGTACCTTTTGAAGAAACTGGAAGCTTACCAGGGGGTGGAA
GACCTGAGCCCGCTGTAAGCTATGCTGGCTGGAGGTACCGGTGGTACCTG
CGGTGACATGCTTATGCATTCGTTAGATACGGTGAAGACTCGACAGCAAG
GCGATCCCCACTTCCCTCCGAAATATACCTCCATGACCTCGTCGTATGCG
ACTATCTATCGACAAGAGGGTTTCTTCCGTGGTCTGTATGGTGGTGTTAC
GCCGGCGCTCTTCGGGTCCTTTCCTGGAACGGTCATCTTCTTTGGTGTTT
ATGAGTTCACCAAGCGGAAGATGCTGGACTCTGGGATTAACCCCAATATT
GCGTATCTGTCTGGAGATGAGCTTGACCTCGCGCGTCTTGGGCCTGTTCA
CGACGACAGAGACACCGTCTACCGACCCCCCTTCTCCTGAGTCGGCCTCT
CAGTTCCCCAACGTTGCTTCCGCTAGCAGCGACCATGTCTTTCATTCCGC
CGGCCCGATAAGCGCAACCAGCGACCATAATGCTCAGAAGGCTGCGTCCC
TTGCGGACGAGGAGGAGCCTCGGCCTCCCTATCTACATGCTTCTTCGCTG
ATTTGGCTGCCTCCATCGTATACGTTCCCTCCGAGGTTTTGAAGACGCGA
CTGCAGTTGCAGGGACGCTACAACAACCCGCATTTCAACTCGGGATACAA
CTACCGCTCGACAACGGATGCGCTACGCACGATTGTTCGCCAGGAAGGGT
TCTCCGCCCTCTTCTACGGATACCGGGCCACCATCTACCGTGACCTTCCA
TTCTCGGCCCTGCAGTTCGCCTTCTACGAACAAGAACAGCGGTTGGCGAA
AGAATGGGTGGGCTCGCGAGAAATCGGACTGCCCATGGAGATCTTGACGG
CTGTCACGGCTGGTGGAATGGCAGGTGTTATGACCTGTCCGATGGACGTT
GTCAAGACGCGGATCCAGACGCAGAAGAACCCGGAAAGCTCGAGCTCGAC
CAAGTCGTCGGGTGAGCCTGCGTCGACCAAGGAGAGCCCGCGCCAGCATA
CGTCATCGCATACGACGTCCAACCTGCGCACACACTCGCGACCCATCTCG
ACGTCTGGAGCATCGACGTCGGTCGCGCCGCCCGGGGCTCCCCGTCTGGA
TACCTCGTCTTTCTTCACTGGCCTGAAGATGATCTACCAGACCGAGGGAA
TCGCGGGATGGTTCCGCGGAGTCGGACCCCGCGGAGTGTGGACCAGTATT
CAGAGTGGAACAATGCTGGTTATGTACCAGTACCTTTTGAAGAAACTGGA
AGCTTACCAGGGGGTGGAAGACCTGAGCCCGCTGTAAGCTATGCTGGCTG
GAGGTACCGGTGGTACCTGCGGTGACATGCTTATGCATTCGTTAGATACG
GTGAAGACTCGACAGCAAGGCGATCCCCACTTCCCTCCGAAATATACCTC
CATGACCTCGTCGTATGCGACTATCTATCGACAAGAGGGTTTCTTCCGTG
GTCTGTATGGTGGTGTTACGCCGGCGCTCTTCGGGTCCTTTCCTGGAACG
GTCATCTTCTTTGGTGTTTATGAGTTCACCAAGCGGAAGATGCTGGACTC
TGGGATTAACCCCAATATTGCGTATCTGTCTGGAGATGAGCTTGACCTCG
CGCGTCTTGGGCCTGTTCACGACGACAGAGACACCGTCTACCGACCCCCC
TTCTCCTGAGTCGGCCTCTCAGTTCCCCAACGTTGCTTCCGCTAGCAGCG
ACCATGTCTTTCATTCCGCCGGCCCGATAAGCGCAACCAGCGACCATAAT
GCTCAGAAGGCTGCGTCCCTTGCGGACGAGGAGGAGCCTCGGCCTCCCTA
TCTACAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004756-T1.utr3p1 | KJC3_004756-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004756-T1.utr5p1 | KJC3_004756-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023395 |
| DBxref | InterPro:IPR018108 |
| DBxref | PFAM:PF00153 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:611115..613388 - |
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