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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:748759..750186+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004798-T1 ID=KJC3_004798-T1|Name=KJC3_004798-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1428bp|location=Sequence derived from alignment at ch4:748759..750186+ (Aspergillus niger KJC3)
TTTCGACATTCGCTGACTGCTACTCTGACCATCTTGGTAGTCAGCGGTGA
GGCTGACAGCAGTATCGTGACATGCTTGCTAAAGAGGCCATTTTTACCTT
GAATATTACCTGTGTTCTATTCTCACGGCACAATTATCAAGCACGACATG
GAGAATGAGCAAGAACATCAGAAAACCACCCAGTCTAAGACAGAAAGTCA
CGATCAGACTTGTCCCGATGTCTCTCGCTGGTACACGGCCCCCGTGAACG
ATGACAGCTGTGGCGGAGAATCGGGCTCCCACGAGGCTACAATCGAAGAT
CAAGGATCACCAAGGCTCCTGGATTTATCAACTCTAGAATCAATATATGC
GCGCGGAGTCTACTACCAGCAGCAAGGGGCTGTCACAGAGGCAAAGAAGA
TGCTATTGCGTGCATCGAAGGCATACGAGGAAATATTCGGACTACACGAC
AACAGGACCCTCGATGCCCTTGAGTACCTTGGCACCACCTATCGGCAGAC
GGGGAAATTGCAGGAGGCTGAGTGTACATATAACCGCGTTCTGGAAGGTC
GGACAGCCCTGTCAGGTCCAGATCACCCGACAACACTGGTGGCGATGAAC
CGACTAGGCGGGGTATGTAGATACCAAGGCAGACTAAATGAGGCCGAGGA
GATCGCCAGAAAAGTATGGAAAGCCTTCAATGAAACCGAAGGACCTGAAC
ACATATCGACAATCAGAGCTTTCGTGTTGCTCGGGAATATTGCGCTTAGA
CGAAATGATATCACCAAGGCGGCCAATATCTACGCAGCTGCACTGGACCA
TTGCAAGGTAGCACTTGGACCCGATCACTCATCCACGCAGACGGTATCTA
GCAACCTTGCGTCGGTTCGTATTCGCCAAGAGAGGTACCCTGAAGCTGAG
ACAATGCTCATCGAGCTGGTGCAGCAGGTGGAGGAGTGTTACGGCCCAAA
AAGTGTACGTGTCCTGCCACCACGACTGAATTTGGCAAATGTCTATACGC
GCCAGAAGAAATATGCCGAAGCACAGGAGACGCTTTATACACTACTCGAG
AGATACAAAGAGACATACGGGGAGGACCATACGAAAACAGTCAATATCAT
GCAACAACTGGCGTGGAATATGAAAAAACAGGGTAATCTTGCCGAGGCTG
GTGAGATGCTGCAGAATGCGCTCGCCTTGGCCGTGGGCGCCCGCGGAAAT
CAGGATCAAGTCTCTATTGATATCATGATTGCTTTGGCCAATGTCTTGAA
CCAGCAAGGTCAATATATCGGCGCGCAGCGGATCCACCACCAGCTATATG
AAGCGTACCAGGCGAAGTTTGGCGAAAATAACTATCTAGCAATCTCGTCG
TTGATTGACGAAGGGGATATGCTTATCTACCAGACGAAATATACCGAGGC
TGAGGCAATCTACAAGGAATCCACTTGA back to topCoding sequence (CDS) from alignment at ch4:748759..750186+ >KJC3_004798-T1 ID=KJC3_004798-T1|Name=KJC3_004798-T1|organism=Aspergillus niger KJC3|type=CDS|length=1281bp|location=Sequence derived from alignment at ch4:748759..750186+ (Aspergillus niger KJC3)
ATGGAGAATGAGCAAGAACATCAGAAAACCACCCAGTCTAAGACAGAAAG
TCACGATCAGACTTGTCCCGATGTCTCTCGCTGGTACACGGCCCCCGTGA
ACGATGACAGCTGTGGCGGAGAATCGGGCTCCCACGAGGCTACAATCGAA
GATCAAGGATCACCAAGGCTCCTGGATTTATCAACTCTAGAATCAATATA
TGCGCGCGGAGTCTACTACCAGCAGCAAGGGGCTGTCACAGAGGCAAAGA
AGATGCTATTGCGTGCATCGAAGGCATACGAGGAAATATTCGGACTACAC
GACAACAGGACCCTCGATGCCCTTGAGTACCTTGGCACCACCTATCGGCA
GACGGGGAAATTGCAGGAGGCTGAGTGTACATATAACCGCGTTCTGGAAG
GTCGGACAGCCCTGTCAGGTCCAGATCACCCGACAACACTGGTGGCGATG
AACCGACTAGGCGGGGTATGTAGATACCAAGGCAGACTAAATGAGGCCGA
GGAGATCGCCAGAAAAGTATGGAAAGCCTTCAATGAAACCGAAGGACCTG
AACACATATCGACAATCAGAGCTTTCGTGTTGCTCGGGAATATTGCGCTT
AGACGAAATGATATCACCAAGGCGGCCAATATCTACGCAGCTGCACTGGA
CCATTGCAAGGTAGCACTTGGACCCGATCACTCATCCACGCAGACGGTAT
CTAGCAACCTTGCGTCGGTTCGTATTCGCCAAGAGAGGTACCCTGAAGCT
GAGACAATGCTCATCGAGCTGGTGCAGCAGGTGGAGGAGTGTTACGGCCC
AAAAAGTGTACGTGTCCTGCCACCACGACTGAATTTGGCAAATGTCTATA
CGCGCCAGAAGAAATATGCCGAAGCACAGGAGACGCTTTATACACTACTC
GAGAGATACAAAGAGACATACGGGGAGGACCATACGAAAACAGTCAATAT
CATGCAACAACTGGCGTGGAATATGAAAAAACAGGGTAATCTTGCCGAGG
CTGGTGAGATGCTGCAGAATGCGCTCGCCTTGGCCGTGGGCGCCCGCGGA
AATCAGGATCAAGTCTCTATTGATATCATGATTGCTTTGGCCAATGTCTT
GAACCAGCAAGGTCAATATATCGGCGCGCAGCGGATCCACCACCAGCTAT
ATGAAGCGTACCAGGCGAAGTTTGGCGAAAATAACTATCTAGCAATCTCG
TCGTTGATTGACGAAGGGGATATGCTTATCTACCAGACGAAATATACCGA
GGCTGAGGCAATCTACAAGGAATCCACTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004798-T1.utr5p1 | KJC3_004798-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR041617 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR019734 |
| DBxref | PFAM:PF17874 |
| DBxref | PFAM:PF13432 |
| DBxref | PFAM:PF13424 |
| DBxref | PFAM:PF13374 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:748759..750186 + |
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