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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:780835..782115+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004813-T1 ID=KJC3_004813-T1|Name=KJC3_004813-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1281bp|location=Sequence derived from alignment at ch4:780835..782115+ (Aspergillus niger KJC3)
CCTCCCAAGTTCCGCATCACGATTGAACCTGTGTCTTGCTTCCTCAAACG
CCAAGGTGGTTTAATTGCACTAGGGAATAAGCCATGGCGTCTTCTTCCCC
GATCCTGCAGCAGCTGGGCTGCTTCCGGTCCCTCCTCCTGAAGCCCCAGT
CCCTGTCGTCCACCGTCAACAACCAGATCGGTCGCCGTGCGCTCAGCACC
GTCTACTCCGCGAAGCCTGAGCCCAAGCCTCTCCCTAAGAACCTGCCGGA
GCAGTTCCTTCGTCAATTACCGCTTCGCATGCGGCCGAATCCTGGTATGG
ACTGAACTAACTCATTTTTTGCTTGGACTTGCGTCCGTCTCGAGTTACCG
ATGCTTGCTTTACCCGGATCATATATCTAACATGTTTAATGAATGATATG
CAGAGCGCAAAGAACGCAAGATCCCTCCTCCGCCGCCGGCCCCTCAGTGC
AAGGACCCCGTGAACGCCGTGCAGGAGGCCCAATTGGCGCAGCTGGACCC
TACAGGCGAGCGCCGCGCTCTTTTCGACTACAGACGGAGTCCTCGCAGTG
TCAAGGTCGGAGATGTTTTGCGGGTGACGTTCAAGAACGGAGATCCGTTC
TCCGGAGTGTGTTTGAGCATTCGGTTGCGCGGCATTGATACGTCGTTCTT
GTTGCGGAACCAGTTGACGAGAGTTGGAGTCGAGATGTCCATCAAGGTGT
TCAGTCCTAATGTTGAGAGTGTGGAGATTGTGCAGAGGGCGGAGAAGAGA
AAGAGACGCGCGAGGTTGTATTACATGAGGTGCGTATTAATTTCTTTGTG
GATAGTGGATTGTATTGGATGGGAAGGCTAACGAGATCTCCTTCGGGTTT
ATAGGAAGCCCAAGCACGACATGGGCAGCGTCGAGAACCTCGTTGCGAAC
TACCTCCGGCAGAAGAGATCGCTTACCGGCAAGAGGGGCGGTGGCCAGAC
GAAGAGACGGTAGACTCGGTCAGACTCTTTCTGCGCATGGTTTGGACTTG
GGTTTATTTGGCGCGAATGAATGTGTATTATTACTAGCATATGTGTGTAT
ATTGAATTTCAGTCCCGGTTTTACTTTTTGGGCGGATATGGATGATTCTT
GAGATGTTGGTTGCAGCTCATGATACCTACCTAGGCCGGGGAAGCATCTA
AAAGAGAAAGATAATGGATTAGAACATCTACACCTTCCGAATCATCTCTT
CTACGATCTTCTAGCCAGTTGGCTTGGGGCCTGGGCATATGGATTTCTAG
CGTGCTTGGTAACACAGCTACTGATCTCACG back to topCoding sequence (CDS) from alignment at ch4:780835..782115+ >KJC3_004813-T1 ID=KJC3_004813-T1|Name=KJC3_004813-T1|organism=Aspergillus niger KJC3|type=CDS|length=2088bp|location=Sequence derived from alignment at ch4:780835..782115+ (Aspergillus niger KJC3)
ATGGCGTCTTCTTCCCCGATCCTGCAGCAGCTGGGCTGCTTCCGGTCCCT
CCTCCTGAAGCCCCAGTCCCTGTCGTCCACCGTCAACAACCAGATCGGTC
GCCGTGCGCTCAGCACCGTCTACTCCGCGAAGCCTGAGCCCAAGCCTCTC
CCTAAGAACCTGCCGGAGCAGTTCCTTCGTCAATTACCGCTTCGCATGCG
GCCGAATCCTGAGCGCAAAGAACGCAAGATCCCTCCTCCGCCGCCGGCCC
CTCAGTGCAAGGACCCCGTGAACGCCGTGCAGGAGGCCCAATTGGCGCAG
CTGGACCCTACAGGCGAGCGCCGCGCTCTTTTCGACTACAGACGGAGTCC
TCGCAGTGTCAAGGTCGGAGATGTTTTGCGGGTGACGTTCAAGAACGGAG
ATCCGTTCTCCGGAGTGTGTTTGAGCATTCGGTTGCGCGGCATTGATACG
TCGTTCTTGTTGCGGAACCAGTTGACGAGAGTTGGAGTCGAGATGTCCAT
CAAGGTGTTCAGTCCTAATGTTGAGAGTGTGGAGATTGTGCAGAGGGCGG
AGAAGAGAAAGAGACGCGCGAGGTTGTATTACATGAGGAAGCCCAAGCAC
GACATGGGCAGCGTCGAGAACCTCGTTGCGAACTACCTCCGGCAGAAGAG
ATCGCTTACCGGCAAGAGGGGCGGTGGCCAGACGAAGAGACGGTAGATGG
CGTCTTCTTCCCCGATCCTGCAGCAGCTGGGCTGCTTCCGGTCCCTCCTC
CTGAAGCCCCAGTCCCTGTCGTCCACCGTCAACAACCAGATCGGTCGCCG
TGCGCTCAGCACCGTCTACTCCGCGAAGCCTGAGCCCAAGCCTCTCCCTA
AGAACCTGCCGGAGCAGTTCCTTCGTCAATTACCGCTTCGCATGCGGCCG
AATCCTGAGCGCAAAGAACGCAAGATCCCTCCTCCGCCGCCGGCCCCTCA
GTGCAAGGACCCCGTGAACGCCGTGCAGGAGGCCCAATTGGCGCAGCTGG
ACCCTACAGGCGAGCGCCGCGCTCTTTTCGACTACAGACGGAGTCCTCGC
AGTGTCAAGGTCGGAGATGTTTTGCGGGTGACGTTCAAGAACGGAGATCC
GTTCTCCGGAGTGTGTTTGAGCATTCGGTTGCGCGGCATTGATACGTCGT
TCTTGTTGCGGAACCAGTTGACGAGAGTTGGAGTCGAGATGTCCATCAAG
GTGTTCAGTCCTAATGTTGAGAGTGTGGAGATTGTGCAGAGGGCGGAGAA
GAGAAAGAGACGCGCGAGGTTGTATTACATGAGGAAGCCCAAGCACGACA
TGGGCAGCGTCGAGAACCTCGTTGCGAACTACCTCCGGCAGAAGAGATCG
CTTACCGGCAAGAGGGGCGGTGGCCAGACGAAGAGACGGTAGATGGCGTC
TTCTTCCCCGATCCTGCAGCAGCTGGGCTGCTTCCGGTCCCTCCTCCTGA
AGCCCCAGTCCCTGTCGTCCACCGTCAACAACCAGATCGGTCGCCGTGCG
CTCAGCACCGTCTACTCCGCGAAGCCTGAGCCCAAGCCTCTCCCTAAGAA
CCTGCCGGAGCAGTTCCTTCGTCAATTACCGCTTCGCATGCGGCCGAATC
CTGAGCGCAAAGAACGCAAGATCCCTCCTCCGCCGCCGGCCCCTCAGTGC
AAGGACCCCGTGAACGCCGTGCAGGAGGCCCAATTGGCGCAGCTGGACCC
TACAGGCGAGCGCCGCGCTCTTTTCGACTACAGACGGAGTCCTCGCAGTG
TCAAGGTCGGAGATGTTTTGCGGGTGACGTTCAAGAACGGAGATCCGTTC
TCCGGAGTGTGTTTGAGCATTCGGTTGCGCGGCATTGATACGTCGTTCTT
GTTGCGGAACCAGTTGACGAGAGTTGGAGTCGAGATGTCCATCAAGGTGT
TCAGTCCTAATGTTGAGAGTGTGGAGATTGTGCAGAGGGCGGAGAAGAGA
AAGAGACGCGCGAGGTTGTATTACATGAGGAAGCCCAAGCACGACATGGG
CAGCGTCGAGAACCTCGTTGCGAACTACCTCCGGCAGAAGAGATCGCTTA
CCGGCAAGAGGGGCGGTGGCCAGACGAAGAGACGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004813-T1.utr5p1 | KJC3_004813-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004813-T1.utr3p1 | KJC3_004813-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264I6B |
| DBxref | InterPro:IPR008991 |
| DBxref | InterPro:IPR038657 |
| DBxref | InterPro:IPR001857 |
| DBxref | PFAM:PF01245 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:780835..782115 + |
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