You are here

Home

KJC3_004821-T1, KJC3_004821-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004821-T1
Unique NameKJC3_004821-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:804325..805326-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004821-T1 ID=KJC3_004821-T1|Name=KJC3_004821-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1002bp|location=Sequence derived from alignment at ch4:804325..805326- (Aspergillus niger KJC3)
ATGGCTGCCAACCCTGTGGAAAATGGACTATTTGTCCATAACAACACTAC
CGCTCCAGCCCACCCCGGCTTGCTGAGCATGTTCTCACTGAAGGGCAAGA
CTGCCATCGTTACCGGCGCCGGTGCTGGCATCGGCCTTTCCGTAGCTATT
GGCCTGGCTGAAGCTGGTGCAAATGTGGCCTTGTGGTATAGCAGCAACCC
CAACTGCATCGAGCGGGCCGCGGAAATTGCCTCCAAGTATGGTGTCCAGG
GTCAGTAGCCCTCAAACCATTTTCCCCACTTACCGTCAGACATACTTTAC
TAACGCTCAATCTAGCCCAGGCGTACAAGGTCGAAATCACCAAGCCCGAA
GCCGTGCAGGCGGCCGTTGACCAGGTTGTGAAAGACTTCAATGGCCGACT
AGACGTTTTCATCGCCAATGCCGGTATCCCCTGGACTAAAGGTCCCATGG
TTGACGGTCCACTGGACCACTACTCGAGTGTTGTCGACGTCGACCTGAAC
GGAACTTTCTACTGCGCCAGGGCAGCGGCAACCCACTGGAGGAGACAAAA
GGAGGAGGGCACCGATATCAATGGTAACGCGCTCAACAACTTCACCTATG
GCAGCTTTGTGGCCACCGCTTCCATGAGCGGTCACATTGTCAACTTCCCT
CAGATGCAGGCAGCATACAACGCCTCCAAAGCGGGTGTCATCCATCTTTG
TAAGTGGAATAACCTTGTAGGCATAGACTTGCACTGTACTAATCCCCTAT
GCAGGCAAGTCGCTGGCTGTCGAGTGGGTTAAGTTTGCGCGTGCCAACAC
CGTTTCTCCCGGATACATTGCGACAGAGATCTCGAATTTCATCCCAGATG
ATGTCAAGGGCATCTGGAAGGACAAGATTCCCATGGGTCGCGAGGGAGAA
CCCGAGGAGCTGAAGGGCGCGTATCTGTACCTGGCATCGGATGCATCCAG
CTACACCACTGGAGCAGACATTGTGGTTGACGGCGGCTACTGCGCCCCGT
AG
back to top

Coding sequence (CDS) from alignment at ch4:804325..805326-

>KJC3_004821-T1 ID=KJC3_004821-T1|Name=KJC3_004821-T1|organism=Aspergillus niger KJC3|type=CDS|length=2646bp|location=Sequence derived from alignment at ch4:804325..805326- (Aspergillus niger KJC3)
GCAAGTCGCTGGCTGTCGAGTGGGTTAAGTTTGCGCGTGCCAACACCGTT
TCTCCCGGATACATTGCGACAGAGATCTCGAATTTCATCCCAGATGATGT
CAAGGGCATCTGGAAGGACAAGATTCCCATGGGTCGCGAGGGAGAACCCG
AGGAGCTGAAGGGCGCGTATCTGTACCTGGCATCGGATGCATCCAGCTAC
ACCACTGGAGCAGACATTGTGGTTGACGGCGGCTACTGCGCCCCGTAGCC
CAGGCGTACAAGGTCGAAATCACCAAGCCCGAAGCCGTGCAGGCGGCCGT
TGACCAGGTTGTGAAAGACTTCAATGGCCGACTAGACGTTTTCATCGCCA
ATGCCGGTATCCCCTGGACTAAAGGTCCCATGGTTGACGGTCCACTGGAC
CACTACTCGAGTGTTGTCGACGTCGACCTGAACGGAACTTTCTACTGCGC
CAGGGCAGCGGCAACCCACTGGAGGAGACAAAAGGAGGAGGGCACCGATA
TCAATGGTAACGCGCTCAACAACTTCACCTATGGCAGCTTTGTGGCCACC
GCTTCCATGAGCGGTCACATTGTCAACTTCCCTCAGATGCAGGCAGCATA
CAACGCCTCCAAAGCGGGTGTCATCCATCTTTATGGCTGCCAACCCTGTG
GAAAATGGACTATTTGTCCATAACAACACTACCGCTCCAGCCCACCCCGG
CTTGCTGAGCATGTTCTCACTGAAGGGCAAGACTGCCATCGTTACCGGCG
CCGGTGCTGGCATCGGCCTTTCCGTAGCTATTGGCCTGGCTGAAGCTGGT
GCAAATGTGGCCTTGTGGTATAGCAGCAACCCCAACTGCATCGAGCGGGC
CGCGGAAATTGCCTCCAAGTATGGTGTCCAGGGCAAGTCGCTGGCTGTCG
AGTGGGTTAAGTTTGCGCGTGCCAACACCGTTTCTCCCGGATACATTGCG
ACAGAGATCTCGAATTTCATCCCAGATGATGTCAAGGGCATCTGGAAGGA
CAAGATTCCCATGGGTCGCGAGGGAGAACCCGAGGAGCTGAAGGGCGCGT
ATCTGTACCTGGCATCGGATGCATCCAGCTACACCACTGGAGCAGACATT
GTGGTTGACGGCGGCTACTGCGCCCCGTAGCCCAGGCGTACAAGGTCGAA
ATCACCAAGCCCGAAGCCGTGCAGGCGGCCGTTGACCAGGTTGTGAAAGA
CTTCAATGGCCGACTAGACGTTTTCATCGCCAATGCCGGTATCCCCTGGA
CTAAAGGTCCCATGGTTGACGGTCCACTGGACCACTACTCGAGTGTTGTC
GACGTCGACCTGAACGGAACTTTCTACTGCGCCAGGGCAGCGGCAACCCA
CTGGAGGAGACAAAAGGAGGAGGGCACCGATATCAATGGTAACGCGCTCA
ACAACTTCACCTATGGCAGCTTTGTGGCCACCGCTTCCATGAGCGGTCAC
ATTGTCAACTTCCCTCAGATGCAGGCAGCATACAACGCCTCCAAAGCGGG
TGTCATCCATCTTTATGGCTGCCAACCCTGTGGAAAATGGACTATTTGTC
CATAACAACACTACCGCTCCAGCCCACCCCGGCTTGCTGAGCATGTTCTC
ACTGAAGGGCAAGACTGCCATCGTTACCGGCGCCGGTGCTGGCATCGGCC
TTTCCGTAGCTATTGGCCTGGCTGAAGCTGGTGCAAATGTGGCCTTGTGG
TATAGCAGCAACCCCAACTGCATCGAGCGGGCCGCGGAAATTGCCTCCAA
GTATGGTGTCCAGGGCAAGTCGCTGGCTGTCGAGTGGGTTAAGTTTGCGC
GTGCCAACACCGTTTCTCCCGGATACATTGCGACAGAGATCTCGAATTTC
ATCCCAGATGATGTCAAGGGCATCTGGAAGGACAAGATTCCCATGGGTCG
CGAGGGAGAACCCGAGGAGCTGAAGGGCGCGTATCTGTACCTGGCATCGG
ATGCATCCAGCTACACCACTGGAGCAGACATTGTGGTTGACGGCGGCTAC
TGCGCCCCGTAGCCCAGGCGTACAAGGTCGAAATCACCAAGCCCGAAGCC
GTGCAGGCGGCCGTTGACCAGGTTGTGAAAGACTTCAATGGCCGACTAGA
CGTTTTCATCGCCAATGCCGGTATCCCCTGGACTAAAGGTCCCATGGTTG
ACGGTCCACTGGACCACTACTCGAGTGTTGTCGACGTCGACCTGAACGGA
ACTTTCTACTGCGCCAGGGCAGCGGCAACCCACTGGAGGAGACAAAAGGA
GGAGGGCACCGATATCAATGGTAACGCGCTCAACAACTTCACCTATGGCA
GCTTTGTGGCCACCGCTTCCATGAGCGGTCACATTGTCAACTTCCCTCAG
ATGCAGGCAGCATACAACGCCTCCAAAGCGGGTGTCATCCATCTTTATGG
CTGCCAACCCTGTGGAAAATGGACTATTTGTCCATAACAACACTACCGCT
CCAGCCCACCCCGGCTTGCTGAGCATGTTCTCACTGAAGGGCAAGACTGC
CATCGTTACCGGCGCCGGTGCTGGCATCGGCCTTTCCGTAGCTATTGGCC
TGGCTGAAGCTGGTGCAAATGTGGCCTTGTGGTATAGCAGCAACCCCAAC
TGCATCGAGCGGGCCGCGGAAATTGCCTCCAAGTATGGTGTCCAGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LXR3KJC3_004821Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004821-T1KJC3_004821-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004821-T1.cdsKJC3_004821-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004821-T1.exon3KJC3_004821-T1.exon3Aspergillus niger KJC3exon
KJC3_004821-T1.exon2KJC3_004821-T1.exon2Aspergillus niger KJC3exon
KJC3_004821-T1.exon1KJC3_004821-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR020904
DBxrefInterPro:IPR002347
DBxrefPFAM:PF08659
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
ProductL-xylulose reductase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:804325..805326 -
Powered by Drupal