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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:954083..955876- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004871-T1 ID=KJC3_004871-T1|Name=KJC3_004871-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1794bp|location=Sequence derived from alignment at ch4:954083..955876- (Aspergillus niger KJC3) ATGCGTGCTCCGTCTCCGCTCCTGCGGAGCTTGCGATCCAAACAACCCGC
CCTTCCCTCCCGCTGTCTACCAGTGCGACAACGCTCAACGAGAACTCCTT
TCCTCGCATTCTCGAGATCTGTTGCCAGCTATACCCATCCTCACCATGCA
TCCGCCATATCGGCTCTTCCCACAGCTGTGGACACCTCGTCCTCGGATTT
CAAGGAGAACGCCCAGCAAATGCAGGAGCTCCTCGACCGGATGGCTAGTC
TACATAGCACAATTTCCCAAGGAGGGCCGCAGAAAGCCAAGGACAAGCAC
ATCGCAAGAGGGAAAATGCTCCCTCGCGACAGAGTTACCGCCCTCATTGA
TCCAGGCACCTCGTTCCTAGAGCTCTCTCCACTCGCCGGCCATGATGTCT
ACTCTGACGACGTCCCAGCAGGTGGCATCATAACAGGCATTGGAACAGTT
GAAGGCGTCACCTGTATGATCGTTGCTAATGACAGCACGGTCAAGGGAGG
CACATACTACCCCATCACCGTTAAAAAGCACCTACGCGCACAAGCAATTG
CTCAAGAAAACAAGCTTCCCTGCCTCTACCTCGTGGACTCTGGTGGTGCA
AACCTTCCCCACCAAGCAGATGTCTTTCCAGACAAGGAGCATTTTGGTCG
CATTTTCTTCAACCAAGCCCGCATGAGTTCCCTGGGCATTCCACAAATAT
CCGTCGTCATGGGCCCCTGCACCGCTGGTGGGGCCTACGTCCCCGCTATG
AGCGATGAGACGATCATTGTCGAGAACCAAGGCACCATCTTTTTGGCCGG
ACCTCCTCTTGTCAAAGCTGCTACAGGCGAGGAAGTCTCCGCAGAGGACC
TTGGTGGGGGTCAGCTTCATAGCACAATCTCAGGTGTAACAGACTATCTT
GCTGTGGACGATGCGCATGCCATTGTTCTCGCCCGGAGATCCATCTCCAA
CCTCAACTATCCAAAAACGACCGTTACTCTTAAGAACATCCCCGGTGACG
CCATCAGAGAGCCGTTGTATGATCCAACGGAGCTGAATGGCATCGTGGGC
ACCAACCTCCGGCGCCAGATTCCCGTCCACGAGGTCATCGCCCGTATCGT
CGATGGCAGTGAGTTTGCCGAATTCAAGCGGGACTATGGCACGACACTTG
TCACTGGCTTTGCTCGTATCTTCGGGCATCAAGTCGGTATTGTCGCCAAC
AATGGTATCCTGTTCTCCGAGTCCTCCCTGAAAGGAGCACACTTCATCGA
GCTCTGCGCGCAACGTAAAATTCCTCTAGTCTTCCTCCAGAATATTTCTG
GCTTCATGGTTGGCGCAGATGCTGAAAAGGGCGGTATTGCAAAGAATGGC
GCGAAGCTCGTTACGGCCGTGGCCTGCGCAGACGTCCCTAAGTTCACAGT
CGTATTTGGTTCCAGCGCTGGCGCGGGCAACTATGGAATGTGGTAAGTCC
TCGGTCAGACATTATTCTTCTTCCTATCCTGTACTCACTACGTTTGCAGC
GGTCGCGCTTACTCTCCGCGTCTTTTGTTCATGTGGCCCAACGCCAAGAT
CGGTGTCATGGGCTCGGAGCAACTTTCTGCTGTCATGGAAGCTGTCGGGC
GGACAGCGGACCCCGATCTTAAGGCTCGGATTGATCGCGAATCGGAGGCG
GTCTTTTCCTCGGCACGGCTGTGGGACGATGGTGTTATTCCTCCCGCGCA
GACGAGACGGTTCCTTGGTCTGGGACTGGCGGCTGCTGTAGGTGGAAGGG
TAGATGCTGATGTGCAGACTCGATTTGGGGTGTTCCGGATGTGA back to topCoding sequence (CDS) from alignment at ch4:954083..955876- >KJC3_004871-T1 ID=KJC3_004871-T1|Name=KJC3_004871-T1|organism=Aspergillus niger KJC3|type=CDS|length=3474bp|location=Sequence derived from alignment at ch4:954083..955876- (Aspergillus niger KJC3) CGGTCGCGCTTACTCTCCGCGTCTTTTGTTCATGTGGCCCAACGCCAAGA TCGGTGTCATGGGCTCGGAGCAACTTTCTGCTGTCATGGAAGCTGTCGGG CGGACAGCGGACCCCGATCTTAAGGCTCGGATTGATCGCGAATCGGAGGC GGTCTTTTCCTCGGCACGGCTGTGGGACGATGGTGTTATTCCTCCCGCGC AGACGAGACGGTTCCTTGGTCTGGGACTGGCGGCTGCTGTAGGTGGAAGG GTAGATGCTGATGTGCAGACTCGATTTGGGGTGTTCCGGATGTGAATGCG TGCTCCGTCTCCGCTCCTGCGGAGCTTGCGATCCAAACAACCCGCCCTTC CCTCCCGCTGTCTACCAGTGCGACAACGCTCAACGAGAACTCCTTTCCTC GCATTCTCGAGATCTGTTGCCAGCTATACCCATCCTCACCATGCATCCGC CATATCGGCTCTTCCCACAGCTGTGGACACCTCGTCCTCGGATTTCAAGG AGAACGCCCAGCAAATGCAGGAGCTCCTCGACCGGATGGCTAGTCTACAT AGCACAATTTCCCAAGGAGGGCCGCAGAAAGCCAAGGACAAGCACATCGC AAGAGGGAAAATGCTCCCTCGCGACAGAGTTACCGCCCTCATTGATCCAG GCACCTCGTTCCTAGAGCTCTCTCCACTCGCCGGCCATGATGTCTACTCT GACGACGTCCCAGCAGGTGGCATCATAACAGGCATTGGAACAGTTGAAGG CGTCACCTGTATGATCGTTGCTAATGACAGCACGGTCAAGGGAGGCACAT ACTACCCCATCACCGTTAAAAAGCACCTACGCGCACAAGCAATTGCTCAA GAAAACAAGCTTCCCTGCCTCTACCTCGTGGACTCTGGTGGTGCAAACCT TCCCCACCAAGCAGATGTCTTTCCAGACAAGGAGCATTTTGGTCGCATTT TCTTCAACCAAGCCCGCATGAGTTCCCTGGGCATTCCACAAATATCCGTC GTCATGGGCCCCTGCACCGCTGGTGGGGCCTACGTCCCCGCTATGAGCGA TGAGACGATCATTGTCGAGAACCAAGGCACCATCTTTTTGGCCGGACCTC CTCTTGTCAAAGCTGCTACAGGCGAGGAAGTCTCCGCAGAGGACCTTGGT GGGGGTCAGCTTCATAGCACAATCTCAGGTGTAACAGACTATCTTGCTGT GGACGATGCGCATGCCATTGTTCTCGCCCGGAGATCCATCTCCAACCTCA ACTATCCAAAAACGACCGTTACTCTTAAGAACATCCCCGGTGACGCCATC AGAGAGCCGTTGTATGATCCAACGGAGCTGAATGGCATCGTGGGCACCAA CCTCCGGCGCCAGATTCCCGTCCACGAGGTCATCGCCCGTATCGTCGATG GCAGTGAGTTTGCCGAATTCAAGCGGGACTATGGCACGACACTTGTCACT GGCTTTGCTCGTATCTTCGGGCATCAAGTCGGTATTGTCGCCAACAATGG TATCCTGTTCTCCGAGTCCTCCCTGAAAGGAGCACACTTCATCGAGCTCT GCGCGCAACGTAAAATTCCTCTAGTCTTCCTCCAGAATATTTCTGGCTTC ATGGTTGGCGCAGATGCTGAAAAGGGCGGTATTGCAAAGAATGGCGCGAA GCTCGTTACGGCCGTGGCCTGCGCAGACGTCCCTAAGTTCACAGTCGTAT TTGGTTCCAGCGCTGGCGCGGGCAACTATGGAATGTGCGGTCGCGCTTAC TCTCCGCGTCTTTTGTTCATGTGGCCCAACGCCAAGATCGGTGTCATGGG CTCGGAGCAACTTTCTGCTGTCATGGAAGCTGTCGGGCGGACAGCGGACC CCGATCTTAAGGCTCGGATTGATCGCGAATCGGAGGCGGTCTTTTCCTCG GCACGGCTGTGGGACGATGGTGTTATTCCTCCCGCGCAGACGAGACGGTT CCTTGGTCTGGGACTGGCGGCTGCTGTAGGTGGAAGGGTAGATGCTGATG TGCAGACTCGATTTGGGGTGTTCCGGATGTGAATGCGTGCTCCGTCTCCG CTCCTGCGGAGCTTGCGATCCAAACAACCCGCCCTTCCCTCCCGCTGTCT ACCAGTGCGACAACGCTCAACGAGAACTCCTTTCCTCGCATTCTCGAGAT CTGTTGCCAGCTATACCCATCCTCACCATGCATCCGCCATATCGGCTCTT CCCACAGCTGTGGACACCTCGTCCTCGGATTTCAAGGAGAACGCCCAGCA AATGCAGGAGCTCCTCGACCGGATGGCTAGTCTACATAGCACAATTTCCC AAGGAGGGCCGCAGAAAGCCAAGGACAAGCACATCGCAAGAGGGAAAATG CTCCCTCGCGACAGAGTTACCGCCCTCATTGATCCAGGCACCTCGTTCCT AGAGCTCTCTCCACTCGCCGGCCATGATGTCTACTCTGACGACGTCCCAG CAGGTGGCATCATAACAGGCATTGGAACAGTTGAAGGCGTCACCTGTATG ATCGTTGCTAATGACAGCACGGTCAAGGGAGGCACATACTACCCCATCAC CGTTAAAAAGCACCTACGCGCACAAGCAATTGCTCAAGAAAACAAGCTTC CCTGCCTCTACCTCGTGGACTCTGGTGGTGCAAACCTTCCCCACCAAGCA GATGTCTTTCCAGACAAGGAGCATTTTGGTCGCATTTTCTTCAACCAAGC CCGCATGAGTTCCCTGGGCATTCCACAAATATCCGTCGTCATGGGCCCCT GCACCGCTGGTGGGGCCTACGTCCCCGCTATGAGCGATGAGACGATCATT GTCGAGAACCAAGGCACCATCTTTTTGGCCGGACCTCCTCTTGTCAAAGC TGCTACAGGCGAGGAAGTCTCCGCAGAGGACCTTGGTGGGGGTCAGCTTC ATAGCACAATCTCAGGTGTAACAGACTATCTTGCTGTGGACGATGCGCAT GCCATTGTTCTCGCCCGGAGATCCATCTCCAACCTCAACTATCCAAAAAC GACCGTTACTCTTAAGAACATCCCCGGTGACGCCATCAGAGAGCCGTTGT ATGATCCAACGGAGCTGAATGGCATCGTGGGCACCAACCTCCGGCGCCAG ATTCCCGTCCACGAGGTCATCGCCCGTATCGTCGATGGCAGTGAGTTTGC CGAATTCAAGCGGGACTATGGCACGACACTTGTCACTGGCTTTGCTCGTA TCTTCGGGCATCAAGTCGGTATTGTCGCCAACAATGGTATCCTGTTCTCC GAGTCCTCCCTGAAAGGAGCACACTTCATCGAGCTCTGCGCGCAACGTAA AATTCCTCTAGTCTTCCTCCAGAATATTTCTGGCTTCATGGTTGGCGCAG ATGCTGAAAAGGGCGGTATTGCAAAGAATGGCGCGAAGCTCGTTACGGCC GTGGCCTGCGCAGACGTCCCTAAGTTCACAGTCGTATTTGGTTCCAGCGC TGGCGCGGGCAACTATGGAATGTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0016874 | ligase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR029045 |
DBxref | InterPro:IPR011763 |
DBxref | InterPro:IPR011762 |
DBxref | InterPro:IPR034733 |
DBxref | PFAM:PF01039 |
Product | mitochondrial |
Product | Methylcrotonoyl-CoA carboxylase beta chain |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch4 | supercontig | ch4:954083..955876 - |
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