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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1081505..1082501+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004905-T1 ID=KJC3_004905-T1|Name=KJC3_004905-T1|organism=Aspergillus niger KJC3|type=mRNA|length=997bp|location=Sequence derived from alignment at ch4:1081505..1082501+ (Aspergillus niger KJC3)
CTCTCAACCACAAAGCTCCATCAGCCACGGGGATCCCCCGCGCCGCTCTT
CACAATGGTAAGCCCTCATGATCAACTCAGCCCCCGAACAAATCACCCTT
TTAAATCAAGCGACCGCGCCCTCGAATTTTGTCCAACTCGTCACCCAAAT
TTCCTCCTCGCCTCTCCCTTCGCCTTCAACCACACCTAAACCTTAAGCTC
AACCAAAAAATCCCTACTAACAAAATGACCAGGCGCGTAACAGCGAAAAA
GCCCAATCGATGCTCTTCCGTTTCCGGGCCCAACAAGCCGCGGATCTCGG
AATCATCGACATTGGGCGCACGCGCCGCCCGAAAGCCATCACCACCGTTG
ACTCGATCCCGATGTGCGAGAAATGGCGCGGCCAAGTGCTGAAGGAAATC
TCACGCAAGGTGTCTCGGATTCAGGAGCTCAGTCTAAGCGATTACCAGAT
CCGGGATCTGAACGATGAGATCAACAAGCTTATGAAGGAGAAGTGGACGT
GGGAGATGCAGATTCGGAACCTGGGCGGGCCCAACTACATGCGAGGCTCA
GGCCGAGTGTTTGATGATGATGGGAGGGAGATACCGGGCGGTGGGAAGGG
GTATCGGTATTTTGGACGAGCGAGGGAGTTACCGGGTGTGAAGGAGATGT
TTGAAGCGGCGGCGAGACGGGGGAGGAGGCCGGCTGAGGAGGAGGATGAA
GAAGGTGGGAAGGGGAGAGGAGGCGAGATTGCGACGAAGAAGGTCGATGC
TAATTACTTTGGGTATGGATTGGATGAGGAGGATGGGGTGCTTTTGGCGT
ATGAGAAGCAGAAAGAGAAGGAGGCTGTTGAGAGATTGCGCAGGAAGGAT
GAGGATGTGGAAGATGGGTGGGAGCCGTTGCCTGGTGATGCTGGGGATGG
CGTCGAGTGGAGGTTGCCTACACTTGACGAGGTCCAGGAGGAGTTGGTTG
ATCGACGGAGGAGGAGGTTGTTGGACAAGATTTCATGAGATTGTGCG back to topCoding sequence (CDS) from alignment at ch4:1081505..1082501+ >KJC3_004905-T1 ID=KJC3_004905-T1|Name=KJC3_004905-T1|organism=Aspergillus niger KJC3|type=CDS|length=1518bp|location=Sequence derived from alignment at ch4:1081505..1082501+ (Aspergillus niger KJC3)
ATGGCGCGTAACAGCGAAAAAGCCCAATCGATGCTCTTCCGTTTCCGGGC
CCAACAAGCCGCGGATCTCGGAATCATCGACATTGGGCGCACGCGCCGCC
CGAAAGCCATCACCACCGTTGACTCGATCCCGATGTGCGAGAAATGGCGC
GGCCAAGTGCTGAAGGAAATCTCACGCAAGGTGTCTCGGATTCAGGAGCT
CAGTCTAAGCGATTACCAGATCCGGGATCTGAACGATGAGATCAACAAGC
TTATGAAGGAGAAGTGGACGTGGGAGATGCAGATTCGGAACCTGGGCGGG
CCCAACTACATGCGAGGCTCAGGCCGAGTGTTTGATGATGATGGGAGGGA
GATACCGGGCGGTGGGAAGGGGTATCGGTATTTTGGACGAGCGAGGGAGT
TACCGGGTGTGAAGGAGATGTTTGAAGCGGCGGCGAGACGGGGGAGGAGG
CCGGCTGAGGAGGAGGATGAAGAAGGTGGGAAGGGGAGAGGAGGCGAGAT
TGCGACGAAGAAGGTCGATGCTAATTACTTTGGGTATGGATTGGATGAGG
AGGATGGGGTGCTTTTGGCGTATGAGAAGCAGAAAGAGAAGGAGGCTGTT
GAGAGATTGCGCAGGAAGGATGAGGATGTGGAAGATGGGTGGGAGCCGTT
GCCTGGTGATGCTGGGGATGGCGTCGAGTGGAGGTTGCCTACACTTGACG
AGGTCCAGGAGGAGTTGGTTGATCGACGGAGGAGGAGGTTGTTGGACAAG
ATTTCATGAATGGCGCGTAACAGCGAAAAAGCCCAATCGATGCTCTTCCG
TTTCCGGGCCCAACAAGCCGCGGATCTCGGAATCATCGACATTGGGCGCA
CGCGCCGCCCGAAAGCCATCACCACCGTTGACTCGATCCCGATGTGCGAG
AAATGGCGCGGCCAAGTGCTGAAGGAAATCTCACGCAAGGTGTCTCGGAT
TCAGGAGCTCAGTCTAAGCGATTACCAGATCCGGGATCTGAACGATGAGA
TCAACAAGCTTATGAAGGAGAAGTGGACGTGGGAGATGCAGATTCGGAAC
CTGGGCGGGCCCAACTACATGCGAGGCTCAGGCCGAGTGTTTGATGATGA
TGGGAGGGAGATACCGGGCGGTGGGAAGGGGTATCGGTATTTTGGACGAG
CGAGGGAGTTACCGGGTGTGAAGGAGATGTTTGAAGCGGCGGCGAGACGG
GGGAGGAGGCCGGCTGAGGAGGAGGATGAAGAAGGTGGGAAGGGGAGAGG
AGGCGAGATTGCGACGAAGAAGGTCGATGCTAATTACTTTGGGTATGGAT
TGGATGAGGAGGATGGGGTGCTTTTGGCGTATGAGAAGCAGAAAGAGAAG
GAGGCTGTTGAGAGATTGCGCAGGAAGGATGAGGATGTGGAAGATGGGTG
GGAGCCGTTGCCTGGTGATGCTGGGGATGGCGTCGAGTGGAGGTTGCCTA
CACTTGACGAGGTCCAGGAGGAGTTGGTTGATCGACGGAGGAGGAGGTTG
TTGGACAAGATTTCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000350 | generation of catalytic spliceosome for second transesterification step |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004905-T1.utr5p1 | KJC3_004905-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004905-T1.utr3p1 | KJC3_004905-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264IOS |
| DBxref | InterPro:IPR037200 |
| DBxref | InterPro:IPR009360 |
| DBxref | InterPro:IPR029012 |
| DBxref | PFAM:PF06246 |
| Product | NineTeen Complex (NTC) component |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1081505..1082501 + |
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