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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1121477..1123570- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004921-T1 ID=KJC3_004921-T1|Name=KJC3_004921-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2094bp|location=Sequence derived from alignment at ch4:1121477..1123570- (Aspergillus niger KJC3)
GCCAGCGCCCACAATGGCCTACAGTTGCTTCCTAGCTCTCACTACCCAGG
ATCAGATTGGTACACCACCACCAACAAGCCATTTCTTGCTTCACTGATCA
TTATCTAATCATGGATTTGCATATCAGACCATTTTACATGTGAATGGAAC
AAGGCGATCCCAGTCAAGGGCTTTGTTGGCCAGAAACATGAATCTGTCAA
TCTCACACTCTACCCTACGAATACCATAGTTACAAAGACCTATAACAACA
AAGATGCTGCATCAGCAGTATGCTTCGACGGTTACCAAAATGATAATGAC
AAGGAGTCCTGCACCCCTTGGTATCTGACCCCAGAAATCACAAGTTTCAT
TACCACGACTATTTTTGAACGCAACAAAGGGGCTGATAATAAGAGCCCGG
TTATCATGAAGTTTATCCTATCCAGGGTAGACGGCTATCTCGCTCGATCC
GATTTCTTAGAGCAGCGCTTAGATGGGGTGAAGCACATTGCCAAGGTGGT
AGCTCTTTCGCGTCCACTACAACAAGTCACGACCGCTCAAGTCCAGATAG
ATGGAACAGCGCATGATCTGAGCACACTTCTGTCGATGTCTGTCGGTGCG
GTCCTTCTCGACACTGGCTCTGGCTCTGATCTTCACGACACCCTCCAGAG
CGTCGAAGAGGCGCTCTGTAACCGGATTTCATATCCATGGGTAGTCCCTA
CATCAATTGTGCCAAAACGCCTTGCATGGGTAGAAGGTCGCAAAGACGCG
GATACGAGTCGACGCATGTACGAGGCGGCAGCAGCCCTAGGGATCTCTCT
GGTGATCATTGACAAGCCGGGGCATTGGCTGCAGAATGACAACGGCCCGT
ACGCCCATCTCCGAGAAGGATTTGTCGCCGCAAATATTGACGTGGATGAG
GGATTCGTCGATAGGATCATCACGGCCGTCCGCAGCTACGATAAGCCCAT
TGATGGCTTGATGACAGTGAGCGATAGCCGCATGATCGGGGTGGCTCGAG
CGTGTGAGATCCTCGGATACCCTACCTCACCATCTTCAGCCTATATCCTC
GCCGGAGATAAGTATCAAACTCGACTAATGGAACCAGACACGCACGGGGC
ATTTCGGGTCTTCGGGACGGACGAGTTAGATAAGGTTCTTCGGTCCACCG
AAGTGTCATATCCCCTCATCGTCAAGCCGTGCTTAGGGTGGGGAAGTCAA
GCTGTCACCAAAGTGTCCACGGAAGACGAGCTATTTCAAGCAGTCGAAAA
AGCCTGTGACTGCCATGCACTTGGTCCACAGAAGCGAAGTGACGCCGTTA
TTGAGCCATACATCGATGGACCGGAAGTCGACGCGAACTTCGTCCTGCTA
AATGGTGAAGTCATCTTTTGCGAGATTAGTGACGACTTTCCAAGCCCTGG
GGACCTAGACGCACAACAAAGCCATAACTTCGTGGAGACTATGGTCCATA
TCCCCTCTGCGCTTCCACCGCATGAGCTGAAGGCCATCCGGAACGCGCTG
CACCAGAGTATTCTTCGTCAAGGATTTCTAACGGGTACCTTTCATTGTGA
AGCACGTTTACAGTATTCGAGTCATGAGTTCCGAAAAGACAGGGAGAACG
GGGTTGAGGATTTGTATCCTCGACAAGGTAAGACCAATGATGGGAAGAAG
AGTGTGCGTGTGTACCTCCTCGAGATAAACGCCCGCCCAGCAGGGTATCT
GGAGACTGTTGGCGTCAACTTGGTCTACGGAGTGGATTATTTCGCCCAGC
AGATGCTCTTCGCAGTCAATGACGAGCTTCGATACAGGGCTTTGTGCCAT
CCATTCTTAAATGGACCTCGCTATAATCTCTCGGTGCTCGTCCTCCAAGA
AGATGTTGCCGGGATCATGAAGACCGAAGATGCCACAGCGGAGCTGCTCC
ATCAGTACCCTGAATTGGAGCCACATGTGCCGCTGTACGCGACAATCAAG
AAGAAAGGGGACAGATTGGTCGGACCAAAGTCGAGCGAGGTCCATTTTAT
TGCCTGGATGTTGGTCACGGCTGAGAAGAGACGCGATTGTCTGCGGTTGG
TAGAGCGGATACGAAGTGATTTCCGCTATGAAGTAGAGTCATAA back to topCoding sequence (CDS) from alignment at ch4:1121477..1123570- >KJC3_004921-T1 ID=KJC3_004921-T1|Name=KJC3_004921-T1|organism=Aspergillus niger KJC3|type=CDS|length=4026bp|location=Sequence derived from alignment at ch4:1121477..1123570- (Aspergillus niger KJC3)
ACCATTTTACATGTGAATGGAACAAGGCGATCCCAGTCAAGGGCTTTGTT
GGCCAGAAACATGAATCTGTCAATCTCACACTCTACCCTACGAATACCAT
AGTTACAAAGACCTATAACAACAAAGATGCTGCATCAGCAGTATGCTTCG
ACGGTTACCAAAATGATAATGACAAGGAGTCCTGCACCCCTTGGTATCTG
ACCCCAGAAATCACAAGTTTCATTACCACGACTATTTTTGAACGCAACAA
AGGGGCTGATAATAAGAGCCCGGTTATCATGAAGTTTATCCTATCCAGGG
TAGACGGCTATCTCGCTCGATCCGATTTCTTAGAGCAGCGCTTAGATGGG
GTGAAGCACATTGCCAAGGTGGTAGCTCTTTCGCGTCCACTACAACAAGT
CACGACCGCTCAAGTCCAGATAGATGGAACAGCGCATGATCTGAGCACAC
TTCTGTCGATGTCTGTCGGTGCGGTCCTTCTCGACACTGGCTCTGGCTCT
GATCTTCACGACACCCTCCAGAGCGTCGAAGAGGCGCTCTGTAACCGGAT
TTCATATCCATGGGTAGTCCCTACATCAATTGTGCCAAAACGCCTTGCAT
GGGTAGAAGGTCGCAAAGACGCGGATACGAGTCGACGCATGTACGAGGCG
GCAGCAGCCCTAGGGATCTCTCTGGTGATCATTGACAAGCCGGGGCATTG
GCTGCAGAATGACAACGGCCCGTACGCCCATCTCCGAGAAGGATTTGTCG
CCGCAAATATTGACGTGGATGAGGGATTCGTCGATAGGATCATCACGGCC
GTCCGCAGCTACGATAAGCCCATTGATGGCTTGATGACAGTGAGCGATAG
CCGCATGATCGGGGTGGCTCGAGCGTGTGAGATCCTCGGATACCCTACCT
CACCATCTTCAGCCTATATCCTCGCCGGAGATAAGTATCAAACTCGACTA
ATGGAACCAGACACGCACGGGGCATTTCGGGTCTTCGGGACGGACGAGTT
AGATAAGGTTCTTCGGTCCACCGAAGTGTCATATCCCCTCATCGTCAAGC
CGTGCTTAGGGTGGGGAAGTCAAGCTGTCACCAAAGTGTCCACGGAAGAC
GAGCTATTTCAAGCAGTCGAAAAAGCCTGTGACTGCCATGCACTTGGTCC
ACAGAAGCGAAGTGACGCCGTTATTGAGCCATACATCGATGGACCGGAAG
TCGACGCGAACTTCGTCCTGCTAAATGGTGAAGTCATCTTTTGCGAGATT
AGTGACGACTTTCCAAGCCCTGGGGACCTAGACGCACAACAAAGCCATAA
CTTCGTGGAGACTATGGTCCATATCCCCTCTGCGCTTCCACCGCATGAGC
TGAAGGCCATCCGGAACGCGCTGCACCAGAGTATTCTTCGTCAAGGATTT
CTAACGGGTACCTTTCATTGTGAAGCACGTTTACAGTATTCGAGTCATGA
GTTCCGAAAAGACAGGGAGAACGGGGTTGAGGATTTGTATCCTCGACAAG
GTAAGACCAATGATGGGAAGAAGAGTGTGCGTGTGTACCTCCTCGAGATA
AACGCCCGCCCAGCAGGGTATCTGGAGACTGTTGGCGTCAACTTGGTCTA
CGGAGTGGATTATTTCGCCCAGCAGATGCTCTTCGCAGTCAATGACGAGC
TTCGATACAGGGCTTTGTGCCATCCATTCTTAAATGGACCTCGCTATAAT
CTCTCGGTGCTCGTCCTCCAAGAAGATGTTGCCGGGATCATGAAGACCGA
AGATGCCACAGCGGAGCTGCTCCATCAGTACCCTGAATTGGAGCCACATG
TGCCGCTGTACGCGACAATCAAGAAGAAAGGGGACAGATTGGTCGGACCA
AAGTCGAGCGAGGTCCATTTTATTGCCTGGATGTTGGTCACGGCTGAGAA
GAGACGCGATTGTCTGCGGTTGGTAGAGCGGATACGAAGTGATTTCCGCT
ATGAAGTAGAGTCATAAATGGCCTACAGTTGCTTCCTAGCTCTCACTACC
CAGGATCAGATTGACCATTTTACATGTGAATGGAACAAGGCGATCCCAGT
CAAGGGCTTTGTTGGCCAGAAACATGAATCTGTCAATCTCACACTCTACC
CTACGAATACCATAGTTACAAAGACCTATAACAACAAAGATGCTGCATCA
GCAGTATGCTTCGACGGTTACCAAAATGATAATGACAAGGAGTCCTGCAC
CCCTTGGTATCTGACCCCAGAAATCACAAGTTTCATTACCACGACTATTT
TTGAACGCAACAAAGGGGCTGATAATAAGAGCCCGGTTATCATGAAGTTT
ATCCTATCCAGGGTAGACGGCTATCTCGCTCGATCCGATTTCTTAGAGCA
GCGCTTAGATGGGGTGAAGCACATTGCCAAGGTGGTAGCTCTTTCGCGTC
CACTACAACAAGTCACGACCGCTCAAGTCCAGATAGATGGAACAGCGCAT
GATCTGAGCACACTTCTGTCGATGTCTGTCGGTGCGGTCCTTCTCGACAC
TGGCTCTGGCTCTGATCTTCACGACACCCTCCAGAGCGTCGAAGAGGCGC
TCTGTAACCGGATTTCATATCCATGGGTAGTCCCTACATCAATTGTGCCA
AAACGCCTTGCATGGGTAGAAGGTCGCAAAGACGCGGATACGAGTCGACG
CATGTACGAGGCGGCAGCAGCCCTAGGGATCTCTCTGGTGATCATTGACA
AGCCGGGGCATTGGCTGCAGAATGACAACGGCCCGTACGCCCATCTCCGA
GAAGGATTTGTCGCCGCAAATATTGACGTGGATGAGGGATTCGTCGATAG
GATCATCACGGCCGTCCGCAGCTACGATAAGCCCATTGATGGCTTGATGA
CAGTGAGCGATAGCCGCATGATCGGGGTGGCTCGAGCGTGTGAGATCCTC
GGATACCCTACCTCACCATCTTCAGCCTATATCCTCGCCGGAGATAAGTA
TCAAACTCGACTAATGGAACCAGACACGCACGGGGCATTTCGGGTCTTCG
GGACGGACGAGTTAGATAAGGTTCTTCGGTCCACCGAAGTGTCATATCCC
CTCATCGTCAAGCCGTGCTTAGGGTGGGGAAGTCAAGCTGTCACCAAAGT
GTCCACGGAAGACGAGCTATTTCAAGCAGTCGAAAAAGCCTGTGACTGCC
ATGCACTTGGTCCACAGAAGCGAAGTGACGCCGTTATTGAGCCATACATC
GATGGACCGGAAGTCGACGCGAACTTCGTCCTGCTAAATGGTGAAGTCAT
CTTTTGCGAGATTAGTGACGACTTTCCAAGCCCTGGGGACCTAGACGCAC
AACAAAGCCATAACTTCGTGGAGACTATGGTCCATATCCCCTCTGCGCTT
CCACCGCATGAGCTGAAGGCCATCCGGAACGCGCTGCACCAGAGTATTCT
TCGTCAAGGATTTCTAACGGGTACCTTTCATTGTGAAGCACGTTTACAGT
ATTCGAGTCATGAGTTCCGAAAAGACAGGGAGAACGGGGTTGAGGATTTG
TATCCTCGACAAGGTAAGACCAATGATGGGAAGAAGAGTGTGCGTGTGTA
CCTCCTCGAGATAAACGCCCGCCCAGCAGGGTATCTGGAGACTGTTGGCG
TCAACTTGGTCTACGGAGTGGATTATTTCGCCCAGCAGATGCTCTTCGCA
GTCAATGACGAGCTTCGATACAGGGCTTTGTGCCATCCATTCTTAAATGG
ACCTCGCTATAATCTCTCGGTGCTCGTCCTCCAAGAAGATGTTGCCGGGA
TCATGAAGACCGAAGATGCCACAGCGGAGCTGCTCCATCAGTACCCTGAA
TTGGAGCCACATGTGCCGCTGTACGCGACAATCAAGAAGAAAGGGGACAG
ATTGGTCGGACCAAAGTCGAGCGAGGTCCATTTTATTGCCTGGATGTTGG
TCACGGCTGAGAAGAGACGCGATTGTCTGCGGTTGGTAGAGCGGATACGA
AGTGATTTCCGCTATGAAGTAGAGTCATAAATGGCCTACAGTTGCTTCCT
AGCTCTCACTACCCAGGATCAGATTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0046872 | metal ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004921-T1.utr5p1 | KJC3_004921-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011761 |
| DBxref | InterPro:IPR041472 |
| DBxref | PFAM:PF07478 |
| DBxref | PFAM:PF18130 |
| DBxref | PFAM:PF13535 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1121477..1123570 - |
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