You are here

Home

KJC3_004984-T1, KJC3_004984-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004984-T1
Unique NameKJC3_004984-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1277727..1279227+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004984-T1 ID=KJC3_004984-T1|Name=KJC3_004984-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1501bp|location=Sequence derived from alignment at ch4:1277727..1279227+ (Aspergillus niger KJC3)
CAGCAATTACATCGAACTATTCCTATTGTATAATTTTCATGCACAATGCG
TCGGTCTGCCCGGCAGGACGCCTCTGAACTTGCTCAAGAGCATGAACTAA
GATCTAATACTGACGTTTATCACACCGATCAGCCGGCGGATGGGCCCGGT
GTCAGTCTAGCCTTCCCTGAAGGTGGCCGAGAGGCATGGATGTGCCTTTT
GGGATCCTATTTGATAATGTTCCCATCATTTGGCTTTGAAACAGCAGGTA
CGCCAAGCTTTTCACGATTCCATTTACATCACTAGATAAGTGGGGTTATC
AAACAACTGACATGAATACTCCAGTTGGCACTGTTCAGGACTACATCAGC
GAGCACCAGCTTGCCGAATATAGCGTCCGCGATGTTGGCTGGATCACCGC
ACTTTTTGTGTTTCTGACTCTATTTCTTGGAGTTCAGGTCGGACCACTGT
TCGATCGATACGGGCCTCGAATCTTATTAACATGCGGATCCGCAGCCAGC
TTCACTTCCTATATGCTACTAGCTGAGTGTACAAAATACTGGCACTTCAT
CCTGTGCCTTTCCATTCTCGGAGGTATAGCTTCAGCCATTGTTACAACAG
TCTCAATTTCAGTCCTGAGCCACTGGTTCCACCGTCGACGCGCCCTAGCA
TCAGGCATTTGTATGGGCGGATCATCAGCGGGAGGCGCTGTCATCCCACT
ACTTCTACGGACCCTGTTCTCAAAATATGGCTGGACGTGGTCTATCCGAG
TTATCGCCTTTCTAGCACTAGGATGCTATACAGCAGGGATTATCCTAGTC
AAAGGCCGCCTTCCAACTGGCAGCAGCAGTAAAGTGACAATTGACTTCTG
GGCCTTCCGGTCCCCTCGGCTTTTTTTCTTAACTGTGGCGGTCTTCTCCT
TTGAGTTTATCATCTTCGGCTGCGCGGCACTATTACCAACATACGTCCGC
TTCGCTGGCTTCTCAGTAGACGTACAATTTTACTCGCTCACAGTCCTGAA
CAGTATGAGCTTACTGGGAAGAGTCCTTCCCGGATTTGCGGCTGACCAAA
TCGGGCGTTTCAACATCCTGCTCTGCCTCGTCGTGATCACGTTAATAATA
ATGGCAACAGTCTGGCTGCCTTTTGGCTCTCATGATGAGAAGACCCTATA
TAGCGTGGTGGCTATCTTTGGATTTGGCTCTGGAGGTTGGATCTCCCTTG
CTCCTGTATGTGCTGGCCAGCTCTGTAGGACTGAAGAGTATGGACGGTTC
TACGGTACCCTGTATTCTGTGGCTTCGTTCGGAGTTTTACTCACTGTTCC
CGTCGGAGGTGATTTGCTGCAATCAACCACACCTCAGATTCTCATTGGGT
TTTATTCAGCGGTGCTCTTGGTTGGGCTTATCGGTCTAATATTGTCTCGA
TGGGCTCTGCTGGACTGGAAGTGGAAGTGGAAGGTTAAGGTGTAATCCCT
CCTAGAAATGGAGTATTTGATCATTTCGTCGGCCAAATTGCTGTCTTTGC
G
back to top

Coding sequence (CDS) from alignment at ch4:1277727..1279227+

>KJC3_004984-T1 ID=KJC3_004984-T1|Name=KJC3_004984-T1|organism=Aspergillus niger KJC3|type=CDS|length=2646bp|location=Sequence derived from alignment at ch4:1277727..1279227+ (Aspergillus niger KJC3)
ATGCGTCGGTCTGCCCGGCAGGACGCCTCTGAACTTGCTCAAGAGCATGA
ACTAAGATCTAATACTGACGTTTATCACACCGATCAGCCGGCGGATGGGC
CCGGTGTCAGTCTAGCCTTCCCTGAAGGTGGCCGAGAGGCATGGATGTGC
CTTTTGGGATCCTATTTGATAATGTTCCCATCATTTGGCTTTGAAACAGC
AGTTGGCACTGTTCAGGACTACATCAGCGAGCACCAGCTTGCCGAATATA
GCGTCCGCGATGTTGGCTGGATCACCGCACTTTTTGTGTTTCTGACTCTA
TTTCTTGGAGTTCAGGTCGGACCACTGTTCGATCGATACGGGCCTCGAAT
CTTATTAACATGCGGATCCGCAGCCAGCTTCACTTCCTATATGCTACTAG
CTGAGTGTACAAAATACTGGCACTTCATCCTGTGCCTTTCCATTCTCGGA
GGTATAGCTTCAGCCATTGTTACAACAGTCTCAATTTCAGTCCTGAGCCA
CTGGTTCCACCGTCGACGCGCCCTAGCATCAGGCATTTGTATGGGCGGAT
CATCAGCGGGAGGCGCTGTCATCCCACTACTTCTACGGACCCTGTTCTCA
AAATATGGCTGGACGTGGTCTATCCGAGTTATCGCCTTTCTAGCACTAGG
ATGCTATACAGCAGGGATTATCCTAGTCAAAGGCCGCCTTCCAACTGGCA
GCAGCAGTAAAGTGACAATTGACTTCTGGGCCTTCCGGTCCCCTCGGCTT
TTTTTCTTAACTGTGGCGGTCTTCTCCTTTGAGTTTATCATCTTCGGCTG
CGCGGCACTATTACCAACATACGTCCGCTTCGCTGGCTTCTCAGTAGACG
TACAATTTTACTCGCTCACAGTCCTGAACAGTATGAGCTTACTGGGAAGA
GTCCTTCCCGGATTTGCGGCTGACCAAATCGGGCGTTTCAACATCCTGCT
CTGCCTCGTCGTGATCACGTTAATAATAATGGCAACAGTCTGGCTGCCTT
TTGGCTCTCATGATGAGAAGACCCTATATAGCGTGGTGGCTATCTTTGGA
TTTGGCTCTGGAGGTTGGATCTCCCTTGCTCCTGTATGTGCTGGCCAGCT
CTGTAGGACTGAAGAGTATGGACGGTTCTACGGTACCCTGTATTCTGTGG
CTTCGTTCGGAGTTTTACTCACTGTTCCCGTCGGAGGTGATTTGCTGCAA
TCAACCACACCTCAGATTCTCATTGGGTTTTATTCAGCGGTGCTCTTGGT
TGGGCTTATCGGTCTAATATTGTCTCGATGGGCTCTGCTGGACTGGAAGT
GGAAGTGGAAGGTTAAGGTGTAAATGCGTCGGTCTGCCCGGCAGGACGCC
TCTGAACTTGCTCAAGAGCATGAACTAAGATCTAATACTGACGTTTATCA
CACCGATCAGCCGGCGGATGGGCCCGGTGTCAGTCTAGCCTTCCCTGAAG
GTGGCCGAGAGGCATGGATGTGCCTTTTGGGATCCTATTTGATAATGTTC
CCATCATTTGGCTTTGAAACAGCAGTTGGCACTGTTCAGGACTACATCAG
CGAGCACCAGCTTGCCGAATATAGCGTCCGCGATGTTGGCTGGATCACCG
CACTTTTTGTGTTTCTGACTCTATTTCTTGGAGTTCAGGTCGGACCACTG
TTCGATCGATACGGGCCTCGAATCTTATTAACATGCGGATCCGCAGCCAG
CTTCACTTCCTATATGCTACTAGCTGAGTGTACAAAATACTGGCACTTCA
TCCTGTGCCTTTCCATTCTCGGAGGTATAGCTTCAGCCATTGTTACAACA
GTCTCAATTTCAGTCCTGAGCCACTGGTTCCACCGTCGACGCGCCCTAGC
ATCAGGCATTTGTATGGGCGGATCATCAGCGGGAGGCGCTGTCATCCCAC
TACTTCTACGGACCCTGTTCTCAAAATATGGCTGGACGTGGTCTATCCGA
GTTATCGCCTTTCTAGCACTAGGATGCTATACAGCAGGGATTATCCTAGT
CAAAGGCCGCCTTCCAACTGGCAGCAGCAGTAAAGTGACAATTGACTTCT
GGGCCTTCCGGTCCCCTCGGCTTTTTTTCTTAACTGTGGCGGTCTTCTCC
TTTGAGTTTATCATCTTCGGCTGCGCGGCACTATTACCAACATACGTCCG
CTTCGCTGGCTTCTCAGTAGACGTACAATTTTACTCGCTCACAGTCCTGA
ACAGTATGAGCTTACTGGGAAGAGTCCTTCCCGGATTTGCGGCTGACCAA
ATCGGGCGTTTCAACATCCTGCTCTGCCTCGTCGTGATCACGTTAATAAT
AATGGCAACAGTCTGGCTGCCTTTTGGCTCTCATGATGAGAAGACCCTAT
ATAGCGTGGTGGCTATCTTTGGATTTGGCTCTGGAGGTTGGATCTCCCTT
GCTCCTGTATGTGCTGGCCAGCTCTGTAGGACTGAAGAGTATGGACGGTT
CTACGGTACCCTGTATTCTGTGGCTTCGTTCGGAGTTTTACTCACTGTTC
CCGTCGGAGGTGATTTGCTGCAATCAACCACACCTCAGATTCTCATTGGG
TTTTATTCAGCGGTGCTCTTGGTTGGGCTTATCGGTCTAATATTGTCTCG
ATGGGCTCTGCTGGACTGGAAGTGGAAGTGGAAGGTTAAGGTGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_004984KJC3_004984Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004984-T1.utr5p1KJC3_004984-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004984-T1.exon1KJC3_004984-T1.exon1Aspergillus niger KJC3exon
KJC3_004984-T1.exon2KJC3_004984-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004984-T1.cdsKJC3_004984-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004984-T1.utr3p1KJC3_004984-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004984-T1KJC3_004984-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR011701
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1277727..1279227 +
Powered by Drupal