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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1328253..1329870- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005006-T1 ID=KJC3_005006-T1|Name=KJC3_005006-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1618bp|location=Sequence derived from alignment at ch4:1328253..1329870- (Aspergillus niger KJC3)
CCAACAACCAAACAGACCATGTCCAGTATGCCCGACAAACGCAAACCCTC
CGGCTCAGTCACCGGATTCTCTCCCTACGCGAAACGTTCCCGCCCCTCCT
ACGCCGAAGAAGATGACGAAGAAGAAGCCCAGCCGACCGTGACTCCATAC
GAACGCCCGCGCAACCACCCGGTGTATGGCCAAAAGAGCGCTTTTCCGGG
TCTGGATGTCGCGGGAGATGATGAGCTATTCTACGGGCCTGCTGAAGATG
GCATGGAATATTTGCGCATGGTTCGGTAAGTTTATTTTGCTTTTCTATCC
TTTACTTCATCCTTTTGCCTGTTGCAGCTTTCTGGCTCTTTTCGCTTCCC
GCTTGCTAAATGCCTGCGTGTTTCGGACTTTAGCTCGCGAAAGGCCTCCT
TCGGCATTTCTTGAATTCGGCGATGTGATGTGATGTGACGTGGCTCATTA
TTTTTTTCATTCTGGTTTGTTGTAGATCGGAAGCAAACTCCCTCCCTTTC
TTGTTTACGGCACCGCAAACGACGGAAACTCCTGCCGCGACGGAGCAGGC
GCAGAACAATGAGGAACTACAACAGCAGGAGGAGGTGAAGGATACAACAG
AGCCTGTCCCTGAGGGCGTGGTTGTTGATGGTGTCTACTTCGTTCCTCCT
ACGTCTACTACCAATACTACTGCCGCCCCTGCTGCGAATGTCGCCGAAGA
GGCTATCTCCGACGCCCAATCAAGCTACTACAACCTCCTTCACCACCGCT
TCCTTCTCCTTCGATCGATACTAAAATGCACACCTCCTTCTGAAGCTATC
GCCGGGCTCGATGAATCCCACCCGATCAGCTTACCGCGACACTCGCGAAA
CGCGCGCAAGGAATGGCGCCGGTTACTCCTGGCGGTAGACCCGCAGACCG
TACAGCTGGCGTGTATGGATATGGAGAGTGTGCTGGGAGTTCTGGAGATC
ATGGCGCGCTTAATGTCGGAGAATGTACGGAGTGGGGATGCGCAACGGGT
TCGACGCATCGGGGCTTGGGCGTGGGGATTGTTGGGGAAGTGTCGGGATG
TTGGGCAGCTAGGGACTGAGGAGGTTGGAGAAATTCGGGAACTGGGGAAG
AGAGCTGTGAAGATTCTGAGGAAGATGAGGGAAGAGGATGAGAAGAAGAT
GCAGGAAGGAGACGGGTCGGATGAGGACGACGCTGAAGAGGACACAGGGG
GAAACGCTGCAGAGGGGGAGGAAGGAACACAGCAAGTGGATGGACCAAGT
GACAATCAGGATCACGATATGCAGGATGTGGAGGAAGAGAAGCCTGCTAC
TGAGGAGGAGCTGGAGGCAGCCAAAGCACGTCTGCAGGCGAAGCTCGCAG
GTGGAGAGGACCAACCCACAGCCACGGAGTCCGAGGCTGGCAATGAGAAC
CCTGCAAATGAAGCGGCGACACAGACTCGCGCCATGCTGGACATGATCAT
CACGGTCATCGGGGAGTATTATGGACAACGGGACCTGCTGGGAGCACGCG
AGCTGTGGAATGGGCCCGAGGCTACCGCATGACGAGGAGATTTGACCAAC
AAATTTAGTGAACAAGATACCCAGTAAGATAGGACAGTCGAACCCAATCT
AAATCTAGTAAATTGAAG back to topCoding sequence (CDS) from alignment at ch4:1328253..1329870- >KJC3_005006-T1 ID=KJC3_005006-T1|Name=KJC3_005006-T1|organism=Aspergillus niger KJC3|type=CDS|length=2628bp|location=Sequence derived from alignment at ch4:1328253..1329870- (Aspergillus niger KJC3)
ATCGGAAGCAAACTCCCTCCCTTTCTTGTTTACGGCACCGCAAACGACGG
AAACTCCTGCCGCGACGGAGCAGGCGCAGAACAATGAGGAACTACAACAG
CAGGAGGAGGTGAAGGATACAACAGAGCCTGTCCCTGAGGGCGTGGTTGT
TGATGGTGTCTACTTCGTTCCTCCTACGTCTACTACCAATACTACTGCCG
CCCCTGCTGCGAATGTCGCCGAAGAGGCTATCTCCGACGCCCAATCAAGC
TACTACAACCTCCTTCACCACCGCTTCCTTCTCCTTCGATCGATACTAAA
ATGCACACCTCCTTCTGAAGCTATCGCCGGGCTCGATGAATCCCACCCGA
TCAGCTTACCGCGACACTCGCGAAACGCGCGCAAGGAATGGCGCCGGTTA
CTCCTGGCGGTAGACCCGCAGACCGTACAGCTGGCGTGTATGGATATGGA
GAGTGTGCTGGGAGTTCTGGAGATCATGGCGCGCTTAATGTCGGAGAATG
TACGGAGTGGGGATGCGCAACGGGTTCGACGCATCGGGGCTTGGGCGTGG
GGATTGTTGGGGAAGTGTCGGGATGTTGGGCAGCTAGGGACTGAGGAGGT
TGGAGAAATTCGGGAACTGGGGAAGAGAGCTGTGAAGATTCTGAGGAAGA
TGAGGGAAGAGGATGAGAAGAAGATGCAGGAAGGAGACGGGTCGGATGAG
GACGACGCTGAAGAGGACACAGGGGGAAACGCTGCAGAGGGGGAGGAAGG
AACACAGCAAGTGGATGGACCAAGTGACAATCAGGATCACGATATGCAGG
ATGTGGAGGAAGAGAAGCCTGCTACTGAGGAGGAGCTGGAGGCAGCCAAA
GCACGTCTGCAGGCGAAGCTCGCAGGTGGAGAGGACCAACCCACAGCCAC
GGAGTCCGAGGCTGGCAATGAGAACCCTGCAAATGAAGCGGCGACACAGA
CTCGCGCCATGCTGGACATGATCATCACGGTCATCGGGGAGTATTATGGA
CAACGGGACCTGCTGGGAGCACGCGAGCTGTGGAATGGGCCCGAGGCTAC
CGCATGAATGTCCAGTATGCCCGACAAACGCAAACCCTCCGGCTCAGTCA
CCGGATTCTCTCCCTACGCGAAACGTTCCCGCCCCTCCTACGCCGAAGAA
GATGACGAAGAAGAAGCCCAGCCGACCGTGACTCCATACGAACGCCCGCG
CAACCACCCGGTGTATGGCCAAAAGAGCGCTTTTCCGGGTCTGGATGTCG
CGGGAGATGATGAGCTATTCTACGGGCCTGCTGAAGATGGCATGGAATAT
TTGCGCATGGTTCGATCGGAAGCAAACTCCCTCCCTTTCTTGTTTACGGC
ACCGCAAACGACGGAAACTCCTGCCGCGACGGAGCAGGCGCAGAACAATG
AGGAACTACAACAGCAGGAGGAGGTGAAGGATACAACAGAGCCTGTCCCT
GAGGGCGTGGTTGTTGATGGTGTCTACTTCGTTCCTCCTACGTCTACTAC
CAATACTACTGCCGCCCCTGCTGCGAATGTCGCCGAAGAGGCTATCTCCG
ACGCCCAATCAAGCTACTACAACCTCCTTCACCACCGCTTCCTTCTCCTT
CGATCGATACTAAAATGCACACCTCCTTCTGAAGCTATCGCCGGGCTCGA
TGAATCCCACCCGATCAGCTTACCGCGACACTCGCGAAACGCGCGCAAGG
AATGGCGCCGGTTACTCCTGGCGGTAGACCCGCAGACCGTACAGCTGGCG
TGTATGGATATGGAGAGTGTGCTGGGAGTTCTGGAGATCATGGCGCGCTT
AATGTCGGAGAATGTACGGAGTGGGGATGCGCAACGGGTTCGACGCATCG
GGGCTTGGGCGTGGGGATTGTTGGGGAAGTGTCGGGATGTTGGGCAGCTA
GGGACTGAGGAGGTTGGAGAAATTCGGGAACTGGGGAAGAGAGCTGTGAA
GATTCTGAGGAAGATGAGGGAAGAGGATGAGAAGAAGATGCAGGAAGGAG
ACGGGTCGGATGAGGACGACGCTGAAGAGGACACAGGGGGAAACGCTGCA
GAGGGGGAGGAAGGAACACAGCAAGTGGATGGACCAAGTGACAATCAGGA
TCACGATATGCAGGATGTGGAGGAAGAGAAGCCTGCTACTGAGGAGGAGC
TGGAGGCAGCCAAAGCACGTCTGCAGGCGAAGCTCGCAGGTGGAGAGGAC
CAACCCACAGCCACGGAGTCCGAGGCTGGCAATGAGAACCCTGCAAATGA
AGCGGCGACACAGACTCGCGCCATGCTGGACATGATCATCACGGTCATCG
GGGAGTATTATGGACAACGGGACCTGCTGGGAGCACGCGAGCTGTGGAAT
GGGCCCGAGGCTACCGCATGAATGTCCAGTATGCCCGACAAACGCAAACC
CTCCGGCTCAGTCACCGGATTCTCTCCCTACGCGAAACGTTCCCGCCCCT
CCTACGCCGAAGAAGATGACGAAGAAGAAGCCCAGCCGACCGTGACTCCA
TACGAACGCCCGCGCAACCACCCGGTGTATGGCCAAAAGAGCGCTTTTCC
GGGTCTGGATGTCGCGGGAGATGATGAGCTATTCTACGGGCCTGCTGAAG
ATGGCATGGAATATTTGCGCATGGTTCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005006-T1.utr3p1 | KJC3_005006-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005006-T1.utr5p1 | KJC3_005006-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035426 |
| DBxref | PFAM:PF04938 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1328253..1329870 - |
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