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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1333953..1335602+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005009-T1 ID=KJC3_005009-T1|Name=KJC3_005009-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1650bp|location=Sequence derived from alignment at ch4:1333953..1335602+ (Aspergillus niger KJC3)
AGAGGCGTGCGGAAGGCGGAGATGCAGCTGGCAATCGGCGGAATGATATC
ATCTCGCTTCTCCGCCATTTTCTTTTCCCCTCACATTTTCCTGATCGCCA
TCCACTTGCCTTTTACTTCCCCACCACACAACTTGCATGACTGACACTAG
ATATATCTGTCGCCCCGGGCAGCTACATGACTCCCCCACTCATGCCGGCG
GGCTTTTGATTTCGACCTGCCATGGGCATTGATGCATTCATGAGTGCCCA
TCATGCCCTTGATGCCCTCACGCCAGATTTATCTCCCCACGGAAATTGTG
GTGGAGATTATCTCTTACGCCGCCGCAGATGATGGCCATCGCCAGTCCAC
TCTCTATGCCTGCTGCCTTGTCTCTCGCCAATGGTACTCAGTAGCCATCC
CATATCTCTATGAGAAGCCGCGCGTGAGCGCCGGGACCGCTTTCAAGAGT
TTTACCGACACAATCTGCCCGACGATCGGCGCACGAAAGAACAAGATACA
TTTGGGCAGTCTAGTCCACAAATTGGACCTCAGTGGGCTCGTCTATCATA
GCTCAAACAGTTTGACAGCACGACTGCTGGGAAGGGTGAAAGAGAATTTA
GAAGTCTTTCTGGCCCCAAGGATCTCCTTTGCGTAAGTACAAAACAACAT
GCTCGTTGTGCATGCCTTCCGTCTGTCTTCGCCCACTTCAGATACTTGAT
ACTGACGCTATAGAACAGCATCAATAGCCTTCCGGCTCTCTCCAAATGTA
CAAACATCAGACACCTCGACTTATCGCTAGTCGGCGATCCAATCCCTTTT
CCCAACCTCAAGAAAGCGATCAGCAACCTCCGCAAACTAACCACCCTTCG
TCTTCCGCGCTCAACCTCCATCACCACCTACGACGACTCTGCAGCCACAA
TAGAATGGCCTCCTAACCTCCAGCGCCTACAATTCAGCGGCCACTACCGT
TCCATACCCATGTCCTCCTTTCCTTGGCCTCGCACCTTGACTACCCTCAC
TCTAAAGAACTGCGCCGATCTCTCCATGTCCAGCCTTGGCAGCCTAATGA
GCAACCCCCAACTAGCCACCCTCAAACGCTTCATCGTCTCCGGCTCCAAC
CGTAACCTGCAACCAGAATCCATCAATGCCATCCCAGTTTTCCTCCCTGA
ATTATCCTCCCTCAGTATCCCTGGCGATCTAGTCAATGATTCCTTCTTCG
ATATTCTCAGCCACATGCACCCCCCACTACCTCTCGAGGATATCGAGTTT
GGATTCCCAAGTCTAGACGCCAACGTGACCTTCAGCACGGGCTCGTTAAT
CACAGCGATGGAATACGGCCTAGCAAACCTCCGATCGGTGGGTTTCTCGG
AGCTCTTCTGCACCAACCAGCGAATTCTGGAAGACACGGAGATCGATGAC
TTCATTCATAGCCGGTTCTCGAAGAAGGAGCGGAGAAATTCCAAATCGTC
TTTCAAGAATGGAGTAGAGAAGAGCGATTATGTGGATGATGATACGATTG
GCGTTTATTACATATGATTGGCTTTTTATATACCTTTTGTTTACATTGCG
TCTGATATATTTCGGCTAGAGTTGGTTCATATATTTTGTTAGGTAAAGTT
ACTGAATTATGATATCGAGATAGAGGATCATTTGAATACTACTACTGGAA
back to topCoding sequence (CDS) from alignment at ch4:1333953..1335602+ >KJC3_005009-T1 ID=KJC3_005009-T1|Name=KJC3_005009-T1|organism=Aspergillus niger KJC3|type=CDS|length=2358bp|location=Sequence derived from alignment at ch4:1333953..1335602+ (Aspergillus niger KJC3)
ATGCCCTTGATGCCCTCACGCCAGATTTATCTCCCCACGGAAATTGTGGT
GGAGATTATCTCTTACGCCGCCGCAGATGATGGCCATCGCCAGTCCACTC
TCTATGCCTGCTGCCTTGTCTCTCGCCAATGGTACTCAGTAGCCATCCCA
TATCTCTATGAGAAGCCGCGCGTGAGCGCCGGGACCGCTTTCAAGAGTTT
TACCGACACAATCTGCCCGACGATCGGCGCACGAAAGAACAAGATACATT
TGGGCAGTCTAGTCCACAAATTGGACCTCAGTGGGCTCGTCTATCATAGC
TCAAACAGTTTGACAGCACGACTGCTGGGAAGGGTGAAAGAGAATTTAGA
AGTCTTTCTGGCCCCAAGGATCTCCTTTGCCATCAATAGCCTTCCGGCTC
TCTCCAAATGTACAAACATCAGACACCTCGACTTATCGCTAGTCGGCGAT
CCAATCCCTTTTCCCAACCTCAAGAAAGCGATCAGCAACCTCCGCAAACT
AACCACCCTTCGTCTTCCGCGCTCAACCTCCATCACCACCTACGACGACT
CTGCAGCCACAATAGAATGGCCTCCTAACCTCCAGCGCCTACAATTCAGC
GGCCACTACCGTTCCATACCCATGTCCTCCTTTCCTTGGCCTCGCACCTT
GACTACCCTCACTCTAAAGAACTGCGCCGATCTCTCCATGTCCAGCCTTG
GCAGCCTAATGAGCAACCCCCAACTAGCCACCCTCAAACGCTTCATCGTC
TCCGGCTCCAACCGTAACCTGCAACCAGAATCCATCAATGCCATCCCAGT
TTTCCTCCCTGAATTATCCTCCCTCAGTATCCCTGGCGATCTAGTCAATG
ATTCCTTCTTCGATATTCTCAGCCACATGCACCCCCCACTACCTCTCGAG
GATATCGAGTTTGGATTCCCAAGTCTAGACGCCAACGTGACCTTCAGCAC
GGGCTCGTTAATCACAGCGATGGAATACGGCCTAGCAAACCTCCGATCGG
TGGGTTTCTCGGAGCTCTTCTGCACCAACCAGCGAATTCTGGAAGACACG
GAGATCGATGACTTCATTCATAGCCGGTTCTCGAAGAAGGAGCGGAGAAA
TTCCAAATCGTCTTTCAAGAATGGAGTAGAGAAGAGCGATTATGTGGATG
ATGATACGATTGGCGTTTATTACATATGAATGCCCTTGATGCCCTCACGC
CAGATTTATCTCCCCACGGAAATTGTGGTGGAGATTATCTCTTACGCCGC
CGCAGATGATGGCCATCGCCAGTCCACTCTCTATGCCTGCTGCCTTGTCT
CTCGCCAATGGTACTCAGTAGCCATCCCATATCTCTATGAGAAGCCGCGC
GTGAGCGCCGGGACCGCTTTCAAGAGTTTTACCGACACAATCTGCCCGAC
GATCGGCGCACGAAAGAACAAGATACATTTGGGCAGTCTAGTCCACAAAT
TGGACCTCAGTGGGCTCGTCTATCATAGCTCAAACAGTTTGACAGCACGA
CTGCTGGGAAGGGTGAAAGAGAATTTAGAAGTCTTTCTGGCCCCAAGGAT
CTCCTTTGCCATCAATAGCCTTCCGGCTCTCTCCAAATGTACAAACATCA
GACACCTCGACTTATCGCTAGTCGGCGATCCAATCCCTTTTCCCAACCTC
AAGAAAGCGATCAGCAACCTCCGCAAACTAACCACCCTTCGTCTTCCGCG
CTCAACCTCCATCACCACCTACGACGACTCTGCAGCCACAATAGAATGGC
CTCCTAACCTCCAGCGCCTACAATTCAGCGGCCACTACCGTTCCATACCC
ATGTCCTCCTTTCCTTGGCCTCGCACCTTGACTACCCTCACTCTAAAGAA
CTGCGCCGATCTCTCCATGTCCAGCCTTGGCAGCCTAATGAGCAACCCCC
AACTAGCCACCCTCAAACGCTTCATCGTCTCCGGCTCCAACCGTAACCTG
CAACCAGAATCCATCAATGCCATCCCAGTTTTCCTCCCTGAATTATCCTC
CCTCAGTATCCCTGGCGATCTAGTCAATGATTCCTTCTTCGATATTCTCA
GCCACATGCACCCCCCACTACCTCTCGAGGATATCGAGTTTGGATTCCCA
AGTCTAGACGCCAACGTGACCTTCAGCACGGGCTCGTTAATCACAGCGAT
GGAATACGGCCTAGCAAACCTCCGATCGGTGGGTTTCTCGGAGCTCTTCT
GCACCAACCAGCGAATTCTGGAAGACACGGAGATCGATGACTTCATTCAT
AGCCGGTTCTCGAAGAAGGAGCGGAGAAATTCCAAATCGTCTTTCAAGAA
TGGAGTAGAGAAGAGCGATTATGTGGATGATGATACGATTGGCGTTTATT
ACATATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005009-T1.utr5p1 | KJC3_005009-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005009-T1.utr3p1 | KJC3_005009-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR032675 |
| DBxref | InterPro:IPR001810 |
| DBxref | PFAM:PF12937 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1333953..1335602 + |
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