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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1341331..1343269+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005012-T2 ID=KJC3_005012-T2|Name=KJC3_005012-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1939bp|location=Sequence derived from alignment at ch4:1341331..1343269+ (Aspergillus niger KJC3)
CTCCAGAGCAATATAACAAATAGCTTGCATATGAGTTCAGTTGCCTGAGA
ATCAATATTCGGTCGATCGCTGCAATCCATCTCCAATGACAGCCGGGAGC
GTGATGCCCCTCGGAGGCTCCAAGTCTGGCTATAATTGGCTTGGGCGCTG
CCACCGGGCGGGATTGTCATTGCGCGGTTCCATCCCGAGTCCGTCGCTGC
CGTGATTACAATTCTAGGCCCGGCTGACTCTCTCCCTCCCTACCCTTGGG
GTTTATACCTCCTCATCAATCCACAGGAACAGCACATCTTGTACCTTTCA
TCTCTCTGTGACAAAGCGAGATGGATTATTCGTTCTATTCAAACCATCCC
CAGCAACCTTATCCTCTCTACGGCGTCCACGGGCTGCCCACCCCCGACCA
AGGCAATCCGGCCCCTCAAGCCGAGGCCATACAGGGCGCTTTCGCTCCCT
TGGTCGGTCTCTCTTGTTTTTGTGGACACTAGTCATATAAATTGCTCATG
ACGCTGACTTGTGGAAAGGGAGCGCAAAACTACCAGCCTTTCGATCCGAA
CCTGCGCTTTCAGGATCCTCACGCAGCCGCTGCCTTCGTTGCCCCGCCAC
ACTCGCCTCCCGAGTCCCTCACCAAGCAGTCGGTTTCCAGCAATGACTAC
TCCAATCAGAACGTTGATCGAGCCTCTTACGATGGAGATGACCAGCTCTT
AGACCAAAGTCTTGGCCGGAGCAGCAGCGAGGAGAAAGAGAGTCTGACTC
CGGCGCAATCAAAGCGAAAGGCTCAGAACAGAGCTGCGTGAGTGGTTCCA
GATCTAGGACTGCGTTATATCCCCTGAAACTAATCTCTGGTTACTGAAAT
CAGCCAGCGCGCATTTCGTGAACGCAAGGAACGACATGTGCGTGAACTGG
AGGAGAAAGTTAGCAATCTTGAAAATGCATCGAACACTCTTGTAGCGGAC
AATGAGCGATTGAAAAGAGAGTTGGCAAAGTTCACAACTGAAAATGAAAT
ACTTCGGGCAACGTCGACTTCAATGCGCCAGTCCGGCCAGCGCTCCACCG
ATGAGGAACCGACAACGACGGGGCCATTGCAATACTCGCCCACGGATTTC
AAGTCCGATGCCGGTGGGGGTAATGGCCCTGCCCATCGCGTCACTATATG
CGGAAAGACAGGCGAGAAACTCCTTGACGCGGGAGCCACCTGGGATCTCA
TCCAGAAGCACGAGCTCTTCAAGCGTGGCCTAGTGAATATTGGCGATGTC
TCGGGTCGGTTGCAAGGTACTGCTCAATGCGACGGGCAGGGGCCTGCCTT
CCGGGAAAGCCAGGTCCTCCAGGCTATTGAAGAAAGTGCAGCTGCTGGCA
ACGATGACTTGTTGTGAATTCGCCTGATAGCATGGATTCTACGATGCAAT
GTCTTGCTTCTTGGTCGCTTTCTTATTTTTTTTTTCTTTTCGGTGCATGG
GCGTCAGGGTTTGTTTCGGAGTAAATACCGCTTTTCACAAGCTTCATGGA
ACATATGCTGCCATCTGCTACTATTTTGTGAAGTGAAGGACCCCGCCGAG
TCCTTCCTGGAGTCATTGGAGATTGAGGAGTGAGCCATTATACCTACTTA
CTGCTACCAAAGTTGTTGAATTGAATGGATGTCTTTGTTCCGAGGTTTCA
GACTACTATTGGTTGATACTCTAAAGTGTTTTGTTTGCTCAGAGCTACGT
AGGACTGCATATGCGTTGCCACGGGTTCTGTAATATGCGCTATCTGGAGC
AAAGCCTTACCCCATGCTGTGCCATAACGCAACAAGGACCTGACAGATTG
AAGTCCATTGATACCTTACAAGGCATGTTTGCTCGACGGTCGACGTTTAT
TATGGCCCAGTTGGTTCTGAACCCCTACTGCAATACAATAGCCCTTACCT
TGTCAGCTGTACTATGATAGTAATCGAACTGACTCTACT back to topCoding sequence (CDS) from alignment at ch4:1341331..1343269+ >KJC3_005012-T2 ID=KJC3_005012-T2|Name=KJC3_005012-T2|organism=Aspergillus niger KJC3|type=CDS|length=1608bp|location=Sequence derived from alignment at ch4:1341331..1343269+ (Aspergillus niger KJC3)
ATGACGCTGACTTGTGGAAAGGGAGCGCAAAACTACCAGCCTTTCGATCC
GAACCTGCGCTTTCAGGATCCTCACGCAGCCGCTGCCTTCGTTGCCCCGC
CACACTCGCCTCCCGAGTCCCTCACCAAGCAGTCGGTTTCCAGCAATGAC
TACTCCAATCAGAACGTTGATCGAGCCTCTTACGATGGAGATGACCAGCT
CTTAGACCAAAGTCTTGGCCGGAGCAGCAGCGAGGAGAAAGAGAGTCTGA
CTCCGGCGCAATCAAAGCGAAAGGCTCAGAACAGAGCTGCCCAGCGCGCA
TTTCGTGAACGCAAGGAACGACATGTGCGTGAACTGGAGGAGAAAGTTAG
CAATCTTGAAAATGCATCGAACACTCTTGTAGCGGACAATGAGCGATTGA
AAAGAGAGTTGGCAAAGTTCACAACTGAAAATGAAATACTTCGGGCAACG
TCGACTTCAATGCGCCAGTCCGGCCAGCGCTCCACCGATGAGGAACCGAC
AACGACGGGGCCATTGCAATACTCGCCCACGGATTTCAAGTCCGATGCCG
GTGGGGGTAATGGCCCTGCCCATCGCGTCACTATATGCGGAAAGACAGGC
GAGAAACTCCTTGACGCGGGAGCCACCTGGGATCTCATCCAGAAGCACGA
GCTCTTCAAGCGTGGCCTAGTGAATATTGGCGATGTCTCGGGTCGGTTGC
AAGGTACTGCTCAATGCGACGGGCAGGGGCCTGCCTTCCGGGAAAGCCAG
GTCCTCCAGGCTATTGAAGAAAGTGCAGCTGCTGGCAACGATGACTTGTT
GTGAATGACGCTGACTTGTGGAAAGGGAGCGCAAAACTACCAGCCTTTCG
ATCCGAACCTGCGCTTTCAGGATCCTCACGCAGCCGCTGCCTTCGTTGCC
CCGCCACACTCGCCTCCCGAGTCCCTCACCAAGCAGTCGGTTTCCAGCAA
TGACTACTCCAATCAGAACGTTGATCGAGCCTCTTACGATGGAGATGACC
AGCTCTTAGACCAAAGTCTTGGCCGGAGCAGCAGCGAGGAGAAAGAGAGT
CTGACTCCGGCGCAATCAAAGCGAAAGGCTCAGAACAGAGCTGCCCAGCG
CGCATTTCGTGAACGCAAGGAACGACATGTGCGTGAACTGGAGGAGAAAG
TTAGCAATCTTGAAAATGCATCGAACACTCTTGTAGCGGACAATGAGCGA
TTGAAAAGAGAGTTGGCAAAGTTCACAACTGAAAATGAAATACTTCGGGC
AACGTCGACTTCAATGCGCCAGTCCGGCCAGCGCTCCACCGATGAGGAAC
CGACAACGACGGGGCCATTGCAATACTCGCCCACGGATTTCAAGTCCGAT
GCCGGTGGGGGTAATGGCCCTGCCCATCGCGTCACTATATGCGGAAAGAC
AGGCGAGAAACTCCTTGACGCGGGAGCCACCTGGGATCTCATCCAGAAGC
ACGAGCTCTTCAAGCGTGGCCTAGTGAATATTGGCGATGTCTCGGGTCGG
TTGCAAGGTACTGCTCAATGCGACGGGCAGGGGCCTGCCTTCCGGGAAAG
CCAGGTCCTCCAGGCTATTGAAGAAAGTGCAGCTGCTGGCAACGATGACT
TGTTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | DNA-binding transcription factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005012-T2.utr5p1 | KJC3_005012-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005012-T2.utr3p1 | KJC3_005012-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004827 |
| DBxref | PFAM:PF00170 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1341331..1343269 + |
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