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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1373857..1377694+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005020-T1 ID=KJC3_005020-T1|Name=KJC3_005020-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3838bp|location=Sequence derived from alignment at ch4:1373857..1377694+ (Aspergillus niger KJC3)
GAGACACGGAGGGTCAGGAAAAGAGGCTGTGCTTGCGTGTCCGGCGACTC
GCTCACAAGTTGATCATTCTTTTTTGCCTTTCTTCCTCCTCCACATCATC
CCATCATCCCATCCCCATCCCCATCTTCATCCCCTTCTCCCTACTTCCTC
TACCGTCCATGTCCCTGCTCCTCTTCGCTCCCCGTCATCCTTGTCCGGTT
GGCTTCTAAGTACCAGCCCGTCATTGCTTGACCACTAAACTACAGTACTA
CTTACTCGCTCTCCTTTCCATCTTGTTCCTTCGCGCCTACCCTCCTTTCC
TTTCTCCCGTGCTCTCTCGATGAGTGTCCGTTGTGTTGCGCTTCATCGAC
CGTCTGATTGGTCCTAAGAACATCGCCCTGCTGCAAGAAACCCGCTGGTC
CTGAGCGTTGATCTCCCTGGGCTTCTTTCCTTCCCGCCCCCCCAGCCAAG
CAATATCTGTTCTATTGCATTTCCAGCACATCCTCTCAACTATGCGACCA
CCACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCCCATCATCCT
CACGTTCTTTTCTGCTTTAACCTCCTCGCCTAGGGTGTCCACCCCCGATT
CACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCCTTCAACATC
CCCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTACCGATGACAA
CTCTACCTTTTTCCTGGCCCGACCTGCTGCGTTTGGCCCTCTGCTTCCGG
ACAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTTGGGGAACGA
ACAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATATCCCGGGTTG
GGGAGAGGGAGATGGTCCGAAGGCGGGCGGAGGTGCCGATAGTACAAATG
GGAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCACAGAGCCAT
CGTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGACTCTGGTAC
CAGAGCGCCATCCCCGTTGACAAATGACGGCACCGATGACCATCTCCACC
ACCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATGGAAAAGCAC
GGGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATATCCAGTCGTT
GCAAGAAAGTGCTGAGATCAACGGCAAGGTCGTCCTACTGAGTAGGGGCG
GCTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGTGGAGGAATT
GCTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGTCACGATGTA
TGCACGGGGTGACACATCCAACGTGACGATCCCCGCCCTCTTCACCTCTC
ACACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAAGGGGAGGAC
TCGGGCGCAGACGATGGATCAGGAACACACACTAAAATATCCACTCACGG
CAGTGCCGGGAAACAACGCATGGACGCCACGGCTACTACCTCTGCCACTG
CGTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGTGCGATGCCT
CCGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATTGTTCGGTCT
CAGCAACCATGGTGGACCCGTCTGGTACCCACCAGAGGACAGTCGTCGCC
CGCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGCTGGGACGAA
CAGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCGAACGAAAAC
CGATGGCGTTTCCGAAGACCTCAAGAAATCCGGCACCTCGTCGAGCAGTA
CTGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGAGATCCAGAC
CTAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAGCACCACCGA
CGCCGCCGGGAACAGGGTGCATACTGGTGTCAAGGGCTCGCACCCTACGC
CTGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGCGAGTATCGC
ACCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGAGGACTCAAG
TCACAAGTCTGTGTATGATGATGTGAAACCAGGATCCTCTTCCCAGCGCA
ATGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAGCCAGGTCCG
AGCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGACCAGAAGCT
GCATGATGCGACAGCTCAGAACGGCCAGGGCGTGAATGCCGCCGAACACG
ACGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACCAGCCCTTTC
TTTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCACGCTGACTGT
TGTTTACGTCCTGCTGTTGCTGCGGTCTCGTATCCGGCGTAGACGGTGGC
GCGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACTTATCATACC
ATTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACGATCCGTTAG
CCCTGGTCCAGTGTCGCCAACCTCGCCACTGTTGGGTGCGAAAAGCCGCT
CAGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACATGTCTCGAAT
GCGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTCGGGGTCCAC
TTTGTGGCGACGGAAGTACACTGGTCGGCAAGTGGAATGTGTTGTGTGCC
TGGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTGCCCTGCGGC
CACGAGTTCCACGCGGAGTGCATGTAAGTCACAATGCTGGAGTCTGTTGT
CAAGCATGTCCATACTAACGATACTCGCAGCACGCCTTGGCTGACGACCC
GCCGGCGAACTTGTCCTATCTGCAAAGGCGACGTGGTTCGGTCAATGTCG
CAGAACAAAGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAGGA
AGAGCACCACCCTGACGCAGATTCTCAGCATAGTTCATCCTCAGCGCCGG
TGCCGATCAGCGGAGTGAGCGAAGACGAGACCTCGGACCTTGAGCGGCAT
GCTGGCTCGGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCACC
GAGTTGGAGGAACTTTGCAGCACTGAGCTATTCTGCTCTTAGTGGTGATA
CGATCTGGCATCAGGCTCAGACGGACGGCAGCCGGTGAACTGCGTTGTCT
TGCTTTATATTATTAACCGCCCCTGGTTCCTTTAGATGTATGTGATGGTG
GAGGTGGGGGTATTCTGTCTTTGCAGCGTTTCCTTTTGTGAGCAGCATTA
GCGATGTTTTGACACCGTCCTTGCTTGGTTGGCGTTTGATGGATTTTATG
GAAGCCGTAGCGACATTGGCAGGAACAGTTTAGTTTCAGTTCTGCACTCA
CTTGTAATATTACCAGACCATAAGCCTCCGGGAATAACTTTTCCCACCGG
TGCTTAGGACGTATTCATTTGCTTTGGACATGAATATTGAGCAGATCCCG
AGACAAAGTCGGCACGATCAAGGACAGGTGATAGTCTACGACAGCGTTAG
TCTGATACCACGGGGTGTTTCAATATCACTTTCGCTGTCCAAGTAACTGG
CATTGTTTCGAACCACCTTGACACACCTCGTAAGTAGTAAGTAAATGAAG
ATCAGACCCTTAAACAACTTTGAATGTGGGCACATGCCAGCATATCTACA
TCGGCTGGCCATCAACTCGCCCAATAACTCAAGTCCGACGGAACAATCAA
GCCATGCAAATCCCTAAACTCCTTAGACATATACATCAAGTCATACACCG
CCCCCCCCCCCCGCGGGATACATTACAAACAGACACTC back to topCoding sequence (CDS) from alignment at ch4:1373857..1377694+ >KJC3_005020-T1 ID=KJC3_005020-T1|Name=KJC3_005020-T1|organism=Aspergillus niger KJC3|type=CDS|length=5280bp|location=Sequence derived from alignment at ch4:1373857..1377694+ (Aspergillus niger KJC3)
ATGCGACCACCACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCC
CATCATCCTCACGTTCTTTTCTGCTTTAACCTCCTCGCCTAGGGTGTCCA
CCCCCGATTCACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCC
TTCAACATCCCCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTAC
CGATGACAACTCTACCTTTTTCCTGGCCCGACCTGCTGCGTTTGGCCCTC
TGCTTCCGGACAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTT
GGGGAACGAACAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATAT
CCCGGGTTGGGGAGAGGGAGATGGTCCGAAGGCGGGCGGAGGTGCCGATA
GTACAAATGGGAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCA
CAGAGCCATCGTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGA
CTCTGGTACCAGAGCGCCATCCCCGTTGACAAATGACGGCACCGATGACC
ATCTCCACCACCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATG
GAAAAGCACGGGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATAT
CCAGTCGTTGCAAGAAAGTGCTGAGATCAACGGCAAGGTCGTCCTACTGA
GTAGGGGCGGCTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGT
GGAGGAATTGCTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGT
CACGATGTATGCACGGGGTGACACATCCAACGTGACGATCCCCGCCCTCT
TCACCTCTCACACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAA
GGGGAGGACTCGGGCGCAGACGATGGATCAGGAACACACACTAAAATATC
CACTCACGGCAGTGCCGGGAAACAACGCATGGACGCCACGGCTACTACCT
CTGCCACTGCGTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGT
GCGATGCCTCCGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATT
GTTCGGTCTCAGCAACCATGGTGGACCCGTCTGGTACCCACCAGAGGACA
GTCGTCGCCCGCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGC
TGGGACGAACAGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCG
AACGAAAACCGATGGCGTTTCCGAAGACCTCAAGAAATCCGGCACCTCGT
CGAGCAGTACTGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGA
GATCCAGACCTAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAG
CACCACCGACGCCGCCGGGAACAGGGTGCATACTGGTGTCAAGGGCTCGC
ACCCTACGCCTGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGC
GAGTATCGCACCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGA
GGACTCAAGTCACAAGTCTGTGTATGATGATGTGAAACCAGGATCCTCTT
CCCAGCGCAATGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAG
CCAGGTCCGAGCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGA
CCAGAAGCTGCATGATGCGACAGCTCAGAACGGCCAGGGCGTGAATGCCG
CCGAACACGACGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACC
AGCCCTTTCTTTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCAC
GCTGACTGTTGTTTACGTCCTGCTGTTGCTGCGGTCTCGTATCCGGCGTA
GACGGTGGCGCGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACT
TATCATACCATTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACG
ATCCGTTAGCCCTGGTCCAGTGTCGCCAACCTCGCCACTGTTGGGTGCGA
AAAGCCGCTCAGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACAT
GTCTCGAATGCGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTC
GGGGTCCACTTTGTGGCGACGGAAGTACACTGGTCGGCAAGTGGAATGTG
TTGTGTGCCTGGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTG
CCCTGCGGCCACGAGTTCCACGCGGAGTGCATCACGCCTTGGCTGACGAC
CCGCCGGCGAACTTGTCCTATCTGCAAAGGCGACGTGGTTCGGTCAATGT
CGCAGAACAAAGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAG
GAAGAGCACCACCCTGACGCAGATTCTCAGCATAGTTCATCCTCAGCGCC
GGTGCCGATCAGCGGAGTGAGCGAAGACGAGACCTCGGACCTTGAGCGGC
ATGCTGGCTCGGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCA
CCGAGTTGGAGGAACTTTGCAGCACTGAGCTATTCTGCTCTTAGTGGTGA
TACGATCTGGCATCAGGCTCAGACGGACGGCAGCCGGTGAATGCGACCAC
CACGTTTGATTCTTGTCGTCTTCTGCCTCATCTTCCTCCCCATCATCCTC
ACGTTCTTTTCTGCTTTAACCTCCTCGCCTAGGGTGTCCACCCCCGATTC
ACTCGCTGGTCGAGCGACGGGACTACACGCTCTCTTCTCCTTCAACATCC
CCTCATCCCTGTTCCCGCCGTCCGCCATCATCAGCCTTACCGATGACAAC
TCTACCTTTTTCCTGGCCCGACCTGCTGCGTTTGGCCCTCTGCTTCCGGA
CAAGGGACTCAGCGGCCAACTCTGGATTGGCAGTGGCTTTGGGGAACGAA
CAACCGCCGGAGCGGAAGGGGAGCTAGGATGCTCCGATATCCCGGGTTGG
GGAGAGGGAGATGGTCCGAAGGCGGGCGGAGGTGCCGATAGTACAAATGG
GAAGTCGGGGTCTACTCCTGGAAACGAGCCGACCGTGCCACAGAGCCATC
GTCAAGCGATTCCCCAGCCGGATATCGACCTGCAGCATGACTCTGGTACC
AGAGCGCCATCCCCGTTGACAAATGACGGCACCGATGACCATCTCCACCA
CCCGCTGCCCGAGTCACAAGTACCGGACTCAAGGGCCATGGAAAAGCACG
GGGAGTTCTATTCGAACCGACAAGCGGCCCATGCTGATATCCAGTCGTTG
CAAGAAAGTGCTGAGATCAACGGCAAGGTCGTCCTACTGAGTAGGGGCGG
CTGTGGCTTCTTGGAGAAGGTCAAGTGGGTCCAGCGGCGTGGAGGAATTG
CTTTGATTGTGGGGGATGACACCCGAGGAGGAAGCCTCGTCACGATGTAT
GCACGGGGTGACACATCCAACGTGACGATCCCCGCCCTCTTCACCTCTCA
CACTACGGCACACCTGCTGTCATCCTTAGTCCCTCCGCAAGGGGAGGACT
CGGGCGCAGACGATGGATCAGGAACACACACTAAAATATCCACTCACGGC
AGTGCCGGGAAACAACGCATGGACGCCACGGCTACTACCTCTGCCACTGC
GTCGCCAACTTCAAGTCACAAAGCAGTAGTTCACGATAGTGCGATGCCTC
CGAAGCAGAAGCCCGGGCTCTTCCACGCTCTTCTGTCATTGTTCGGTCTC
AGCAACCATGGTGGACCCGTCTGGTACCCACCAGAGGACAGTCGTCGCCC
GCCAAGCAGCGGGAACATTAATTGGATTCTACTAGATCGCTGGGACGAAC
AGGAACCATCACAGGATGATACCGAGCGAAAGACCTCCCGAACGAAAACC
GATGGCGTTTCCGAAGACCTCAAGAAATCCGGCACCTCGTCGAGCAGTAC
TGACGGTGATGGGTTCGTCATTGGAGTACAGGACTGGAGAGATCCAGACC
TAGTAGTTCCGAAGGGCAGCGCCCTTCCGTCACCTACCAGCACCACCGAC
GCCGCCGGGAACAGGGTGCATACTGGTGTCAAGGGCTCGCACCCTACGCC
TGCGACTTTAAAGGGTGGCAGCATCACTCCAGGAAGTGGCGAGTATCGCA
CCGTCGAGAAGTCCAGCGTTGAAAAAGAGTCGAAGGTGGAGGACTCAAGT
CACAAGTCTGTGTATGATGATGTGAAACCAGGATCCTCTTCCCAGCGCAA
TGGTTGGTTTGCCAGGCATTTCTTCTGGGCAACGGACAAGCCAGGTCCGA
GCCCAAGCTCCAGCGCCCATGGGCAAATTACTTCCGTAGACCAGAAGCTG
CATGATGCGACAGCTCAGAACGGCCAGGGCGTGAATGCCGCCGAACACGA
CGGCTTGTGGGTCACACTCACGCCCACGAGCATGTCGACCAGCCCTTTCT
TTGATACCCTCCTCGTCTTGGTCGTCAGCCCATTACTCACGCTGACTGTT
GTTTACGTCCTGCTGTTGCTGCGGTCTCGTATCCGGCGTAGACGGTGGCG
CGCTCCAAAGTCCCTCGTTGATCGCCTCCCTGTGCGAACTTATCATACCA
TTGCGAGATCGACCTCTTCCTCGGAAACGAGCTCGCCACGATCCGTTAGC
CCTGGTCCAGTGTCGCCAACCTCGCCACTGTTGGGTGCGAAAAGCCGCTC
AGGAGCCCAGTTGCCGTCTCGATCCCAGCAAGAGTCACATGTCTCGAATG
CGAGTGCGTCCAGGATATCATCATCGAGGAAGGGCAAGTCGGGGTCCACT
TTGTGGCGACGGAAGTACACTGGTCGGCAAGTGGAATGTGTTGTGTGCCT
GGAGGAATATGTGGATGGGCAGAGCAGGGTGATGAGTTTGCCCTGCGGCC
ACGAGTTCCACGCGGAGTGCATCACGCCTTGGCTGACGACCCGCCGGCGA
ACTTGTCCTATCTGCAAAGGCGACGTGGTTCGGTCAATGTCGCAGAACAA
AGCGGCGGAGGCTTACGAGTCGGCAGAGCCGATGAACGAGGAAGAGCACC
ACCCTGACGCAGATTCTCAGCATAGTTCATCCTCAGCGCCGGTGCCGATC
AGCGGAGTGAGCGAAGACGAGACCTCGGACCTTGAGCGGCATGCTGGCTC
GGAAACAGGTCTTCTCGAGGGACAGGCGTCCTCTGCACCACCGAGTTGGA
GGAACTTTGCAGCACTGAGCTATTCTGCTCTTAGTGGTGATACGATCTGG
CATCAGGCTCAGACGGACGGCAGCCGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005020-T1.utr5p1 | KJC3_005020-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005020-T1.utr3p1 | KJC3_005020-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR003137 |
| DBxref | InterPro:IPR001841 |
| DBxref | PFAM:PF13445 |
| DBxref | PFAM:PF14634 |
| DBxref | PFAM:PF13639 |
| DBxref | PFAM:PF17123 |
| DBxref | PFAM:PF12678 |
| DBxref | PFAM:PF13923 |
| DBxref | PFAM:PF00097 |
| DBxref | PFAM:PF02225 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1373857..1377694 + |
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