|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1463618..1464737- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005057-T1 ID=KJC3_005057-T1|Name=KJC3_005057-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1120bp|location=Sequence derived from alignment at ch4:1463618..1464737- (Aspergillus niger KJC3)
TCTACAATTATTCTGCCTTTCTCTTAACCAACTCCACCTCGCACAGCTGT
ACAAACAGAATGATATAGATACATAATACGCCATGGTTCTCCTAACAACA
ACACCTCCCATTCTCACCGCCATCGAGGCCCTCCCTCCTACCTCGCGACA
TGACTTCTCCCTCCCCGATACCTTGAAACTGGAGGACCCAATCTCCCACG
ACCAATTGATCAGAATAGCTCGATACTTCCGACAAACAGATACTTCCAGC
TCCACCTATTCGATTGCTGAAACCAAAACCCTGAACTCCCTCCTCCGCGG
AACAAAAGTCTACATTCCCCCGCCGCCCAAGAAACCCGAGCCGGTAAACA
CCTATCTCCAACACCTCCCCAACACTATACCAATAAGCATACACAAAACT
AACAAACGACAATAAATATAGAGCCCCGAATACCTCGCCCTCAAAGCGCG
CCTCCTCGCCGCGGCCGAAACAGACGCCTACAACCGCATGACTTCATCCT
CGACTTTCTCCTCATCCGCTTTCTTCCCTCCATCATCCAGAACCCCAGCA
CCAACCAAACCCTCAATCTTCACCTCTTCAACTCCCACCGTCGAAGCCCT
GCACAACAAGTCTAATAATAACAATGAAGAAACAGATCCCCTCACACCCG
GCCTCGTCCTAAACATCTTCCTCTCCGTCCTCATCACTGGGTTCAGCGTG
TACTGGGCTCTGCGGAGTTTCCGGTCCCCCGAGATGCTAGTCTCCACTGT
AGCAAGGATTTGGAGGGGAACGGGCACAGGGCAAGGAGTATCGGAGTCGG
TGAAGGTTTTGGTGTCGTTGGGGGCGGCGGTCGTGGTGGGGGTGGCGGAG
GTGATGATATATGCGATTTATTTGAGAAAGGTGGAGGTTGCAAAGGGGAG
GGAGAGGAGGGTGAAGGAGAGGAAGGTGGTTGTGGAAAGTGAGAGGGTTG
GGGGGAAGGTTAAGCAGGGTGATGAGGATGGGGCGGAGAGGGTTGGGGGC
AAGGAGGAGGAGGTTATCTGGGGAAGGGGAGTGAATGGGGGGTTGAGGAG
GAGGGTGAGGGAGAAATGGGAGGAGAAGGAGAAGAATGTGGATATGCAGA
GGGATGGGAGTAGCGAATAG back to topCoding sequence (CDS) from alignment at ch4:1463618..1464737- >KJC3_005057-T1 ID=KJC3_005057-T1|Name=KJC3_005057-T1|organism=Aspergillus niger KJC3|type=CDS|length=1920bp|location=Sequence derived from alignment at ch4:1463618..1464737- (Aspergillus niger KJC3)
AGCCCCGAATACCTCGCCCTCAAAGCGCGCCTCCTCGCCGCGGCCGAAAC
AGACGCCTACAACCGCATGACTTCATCCTCGACTTTCTCCTCATCCGCTT
TCTTCCCTCCATCATCCAGAACCCCAGCACCAACCAAACCCTCAATCTTC
ACCTCTTCAACTCCCACCGTCGAAGCCCTGCACAACAAGTCTAATAATAA
CAATGAAGAAACAGATCCCCTCACACCCGGCCTCGTCCTAAACATCTTCC
TCTCCGTCCTCATCACTGGGTTCAGCGTGTACTGGGCTCTGCGGAGTTTC
CGGTCCCCCGAGATGCTAGTCTCCACTGTAGCAAGGATTTGGAGGGGAAC
GGGCACAGGGCAAGGAGTATCGGAGTCGGTGAAGGTTTTGGTGTCGTTGG
GGGCGGCGGTCGTGGTGGGGGTGGCGGAGGTGATGATATATGCGATTTAT
TTGAGAAAGGTGGAGGTTGCAAAGGGGAGGGAGAGGAGGGTGAAGGAGAG
GAAGGTGGTTGTGGAAAGTGAGAGGGTTGGGGGGAAGGTTAAGCAGGGTG
ATGAGGATGGGGCGGAGAGGGTTGGGGGCAAGGAGGAGGAGGTTATCTGG
GGAAGGGGAGTGAATGGGGGGTTGAGGAGGAGGGTGAGGGAGAAATGGGA
GGAGAAGGAGAAGAATGTGGATATGCAGAGGGATGGGAGTAGCGAATAGA
TGGTTCTCCTAACAACAACACCTCCCATTCTCACCGCCATCGAGGCCCTC
CCTCCTACCTCGCGACATGACTTCTCCCTCCCCGATACCTTGAAACTGGA
GGACCCAATCTCCCACGACCAATTGATCAGAATAGCTCGATACTTCCGAC
AAACAGATACTTCCAGCTCCACCTATTCGATTGCTGAAACCAAAACCCTG
AACTCCCTCCTCCGCGGAACAAAAGTCTACATTCCCCCGCCGCCCAAGAA
ACCCGAGCCGAGCCCCGAATACCTCGCCCTCAAAGCGCGCCTCCTCGCCG
CGGCCGAAACAGACGCCTACAACCGCATGACTTCATCCTCGACTTTCTCC
TCATCCGCTTTCTTCCCTCCATCATCCAGAACCCCAGCACCAACCAAACC
CTCAATCTTCACCTCTTCAACTCCCACCGTCGAAGCCCTGCACAACAAGT
CTAATAATAACAATGAAGAAACAGATCCCCTCACACCCGGCCTCGTCCTA
AACATCTTCCTCTCCGTCCTCATCACTGGGTTCAGCGTGTACTGGGCTCT
GCGGAGTTTCCGGTCCCCCGAGATGCTAGTCTCCACTGTAGCAAGGATTT
GGAGGGGAACGGGCACAGGGCAAGGAGTATCGGAGTCGGTGAAGGTTTTG
GTGTCGTTGGGGGCGGCGGTCGTGGTGGGGGTGGCGGAGGTGATGATATA
TGCGATTTATTTGAGAAAGGTGGAGGTTGCAAAGGGGAGGGAGAGGAGGG
TGAAGGAGAGGAAGGTGGTTGTGGAAAGTGAGAGGGTTGGGGGGAAGGTT
AAGCAGGGTGATGAGGATGGGGCGGAGAGGGTTGGGGGCAAGGAGGAGGA
GGTTATCTGGGGAAGGGGAGTGAATGGGGGGTTGAGGAGGAGGGTGAGGG
AGAAATGGGAGGAGAAGGAGAAGAATGTGGATATGCAGAGGGATGGGAGT
AGCGAATAGATGGTTCTCCTAACAACAACACCTCCCATTCTCACCGCCAT
CGAGGCCCTCCCTCCTACCTCGCGACATGACTTCTCCCTCCCCGATACCT
TGAAACTGGAGGACCCAATCTCCCACGACCAATTGATCAGAATAGCTCGA
TACTTCCGACAAACAGATACTTCCAGCTCCACCTATTCGATTGCTGAAAC
CAAAACCCTGAACTCCCTCCTCCGCGGAACAAAAGTCTACATTCCCCCGC
CGCCCAAGAAACCCGAGCCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005057-T1.utr5p1 | KJC3_005057-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021013 |
| DBxref | PFAM:PF11712 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1463618..1464737 - |
|
