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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1499042..1500286+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005068-T1 ID=KJC3_005068-T1|Name=KJC3_005068-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1245bp|location=Sequence derived from alignment at ch4:1499042..1500286+ (Aspergillus niger KJC3)
CTGCGGACATATCCTAGACAAAATGGCGCCCTGGGACGATTTCGATTCTA
TCTTTTACTTTAACAAAAACTTCACCTACGATGACAAGGTTATCGAGCAG
ATCGTCGCCAACCGCCGTGCACTCGAAAACCAGCTGTTCGCCGACCGACT
GCTAGGATTGCTCGGAGTTAAAGCAGGTATTCTCTCCCCCCATCCAGCCC
TGAAGCGAAGGTCGTTGTTAATCAGGAGAAACCTGTAGTTACGCAACTAT
ACCCTCCCAGATCCAATGCCGACCTCCGGACTCTTGTCGGACACATTCTT
TCCTCCCCCATGGACATAGAGCACAAGCAAGCGTTGATCTACTATATCCT
GAAAGATTGCCGTGCCGCCAGCGATGCGGCTTCTCAGTTTTCGCGGCGGT
GTCATTTGCCGGAGAAGTACAGATTGTTCATAGAAGGACTATGGAACCTC
GATAGGCTTGAATTTAAGGTGCGTATCTGCCTTTTATGCAGTTTGCGACG
GTTACTGACCCAGAATGCGCCGATAGCGAGCCGTCGAATATCTGACTGAG
CCTTCTATCATTCCCACCTTCCCGGATGAAATCCTCTATGTCCTTACTCT
TCCTCGGCTTCCCAAGCACGATGACAGCCTCGTAATGGCATACTACCTTA
CTGTTTCCCCACCTTTGGCATCGGAGAAGGTCCAGCGAGCCTTCTTCAAG
ACTCTCTGTCGCGCAAGCATTACGGAGGCCTTCTACTTCACCCGCAAGAA
CGACGACAATCTACGTCGGAGCTATCTTACACAGCTCATCGAGTTCGTGC
ACACAACGGACGCTGGTCAGCTTCGGAGCAGTCGCGCGCTGGAACTAATC
GGCCTTCCATTTGACGACCAAGAAGAGGAATGGTTCGAGGATGCTCTGCT
CCACGGAAGCGCAAAGGGTCTCCATGGCTCCAAGGACACAGTCATGATGC
GCCGCCTTGCCAGTGGCAAGTTGAGCGGACTGGCCCAGGAGCTTGAGTCC
CTCGGCGGGGAGAAGATTGACGGGCTAAACTGGGATGTCCTGAGACAGAG
CGTTACACATACGCAGACCTCACAGTCCAGCGGAGGGCAAGCTTGACATG
AACTTGATATTATGGGAAATGGCTCGGAGAATAGGAGTTGCGCATCGGAT
CCATTGTAATTTTACGAAGCATTGGCATTAAACAGGCGACGGTTGCTTTT
GATGATTTACTACAAGGCCGAAAATATAGCCACCAGTATACCCCC back to topCoding sequence (CDS) from alignment at ch4:1499042..1500286+ >KJC3_005068-T1 ID=KJC3_005068-T1|Name=KJC3_005068-T1|organism=Aspergillus niger KJC3|type=CDS|length=2862bp|location=Sequence derived from alignment at ch4:1499042..1500286+ (Aspergillus niger KJC3)
ATGGCGCCCTGGGACGATTTCGATTCTATCTTTTACTTTAACAAAAACTT
CACCTACGATGACAAGGTTATCGAGCAGATCGTCGCCAACCGCCGTGCAC
TCGAAAACCAGCTGTTCGCCGACCGACTGCTAGGATTGCTCGGAGTTAAA
GCAGTTACGCAACTATACCCTCCCAGATCCAATGCCGACCTCCGGACTCT
TGTCGGACACATTCTTTCCTCCCCCATGGACATAGAGCACAAGCAAGCGT
TGATCTACTATATCCTGAAAGATTGCCGTGCCGCCAGCGATGCGGCTTCT
CAGTTTTCGCGGCGGTGTCATTTGCCGGAGAAGTACAGATTGTTCATAGA
AGGACTATGGAACCTCGATAGGCTTGAATTTAAGCGAGCCGTCGAATATC
TGACTGAGCCTTCTATCATTCCCACCTTCCCGGATGAAATCCTCTATGTC
CTTACTCTTCCTCGGCTTCCCAAGCACGATGACAGCCTCGTAATGGCATA
CTACCTTACTGTTTCCCCACCTTTGGCATCGGAGAAGGTCCAGCGAGCCT
TCTTCAAGACTCTCTGTCGCGCAAGCATTACGGAGGCCTTCTACTTCACC
CGCAAGAACGACGACAATCTACGTCGGAGCTATCTTACACAGCTCATCGA
GTTCGTGCACACAACGGACGCTGGTCAGCTTCGGAGCAGTCGCGCGCTGG
AACTAATCGGCCTTCCATTTGACGACCAAGAAGAGGAATGGTTCGAGGAT
GCTCTGCTCCACGGAAGCGCAAAGGGTCTCCATGGCTCCAAGGACACAGT
CATGATGCGCCGCCTTGCCAGTGGCAAGTTGAGCGGACTGGCCCAGGAGC
TTGAGTCCCTCGGCGGGGAGAAGATTGACGGGCTAAACTGGGATGTCCTG
AGACAGAGCGTTACACATACGCAGACCTCACAGTCCAGCGGAGGGCAAGC
TTGAATGGCGCCCTGGGACGATTTCGATTCTATCTTTTACTTTAACAAAA
ACTTCACCTACGATGACAAGGTTATCGAGCAGATCGTCGCCAACCGCCGT
GCACTCGAAAACCAGCTGTTCGCCGACCGACTGCTAGGATTGCTCGGAGT
TAAAGCAGTTACGCAACTATACCCTCCCAGATCCAATGCCGACCTCCGGA
CTCTTGTCGGACACATTCTTTCCTCCCCCATGGACATAGAGCACAAGCAA
GCGTTGATCTACTATATCCTGAAAGATTGCCGTGCCGCCAGCGATGCGGC
TTCTCAGTTTTCGCGGCGGTGTCATTTGCCGGAGAAGTACAGATTGTTCA
TAGAAGGACTATGGAACCTCGATAGGCTTGAATTTAAGCGAGCCGTCGAA
TATCTGACTGAGCCTTCTATCATTCCCACCTTCCCGGATGAAATCCTCTA
TGTCCTTACTCTTCCTCGGCTTCCCAAGCACGATGACAGCCTCGTAATGG
CATACTACCTTACTGTTTCCCCACCTTTGGCATCGGAGAAGGTCCAGCGA
GCCTTCTTCAAGACTCTCTGTCGCGCAAGCATTACGGAGGCCTTCTACTT
CACCCGCAAGAACGACGACAATCTACGTCGGAGCTATCTTACACAGCTCA
TCGAGTTCGTGCACACAACGGACGCTGGTCAGCTTCGGAGCAGTCGCGCG
CTGGAACTAATCGGCCTTCCATTTGACGACCAAGAAGAGGAATGGTTCGA
GGATGCTCTGCTCCACGGAAGCGCAAAGGGTCTCCATGGCTCCAAGGACA
CAGTCATGATGCGCCGCCTTGCCAGTGGCAAGTTGAGCGGACTGGCCCAG
GAGCTTGAGTCCCTCGGCGGGGAGAAGATTGACGGGCTAAACTGGGATGT
CCTGAGACAGAGCGTTACACATACGCAGACCTCACAGTCCAGCGGAGGGC
AAGCTTGAATGGCGCCCTGGGACGATTTCGATTCTATCTTTTACTTTAAC
AAAAACTTCACCTACGATGACAAGGTTATCGAGCAGATCGTCGCCAACCG
CCGTGCACTCGAAAACCAGCTGTTCGCCGACCGACTGCTAGGATTGCTCG
GAGTTAAAGCAGTTACGCAACTATACCCTCCCAGATCCAATGCCGACCTC
CGGACTCTTGTCGGACACATTCTTTCCTCCCCCATGGACATAGAGCACAA
GCAAGCGTTGATCTACTATATCCTGAAAGATTGCCGTGCCGCCAGCGATG
CGGCTTCTCAGTTTTCGCGGCGGTGTCATTTGCCGGAGAAGTACAGATTG
TTCATAGAAGGACTATGGAACCTCGATAGGCTTGAATTTAAGCGAGCCGT
CGAATATCTGACTGAGCCTTCTATCATTCCCACCTTCCCGGATGAAATCC
TCTATGTCCTTACTCTTCCTCGGCTTCCCAAGCACGATGACAGCCTCGTA
ATGGCATACTACCTTACTGTTTCCCCACCTTTGGCATCGGAGAAGGTCCA
GCGAGCCTTCTTCAAGACTCTCTGTCGCGCAAGCATTACGGAGGCCTTCT
ACTTCACCCGCAAGAACGACGACAATCTACGTCGGAGCTATCTTACACAG
CTCATCGAGTTCGTGCACACAACGGACGCTGGTCAGCTTCGGAGCAGTCG
CGCGCTGGAACTAATCGGCCTTCCATTTGACGACCAAGAAGAGGAATGGT
TCGAGGATGCTCTGCTCCACGGAAGCGCAAAGGGTCTCCATGGCTCCAAG
GACACAGTCATGATGCGCCGCCTTGCCAGTGGCAAGTTGAGCGGACTGGC
CCAGGAGCTTGAGTCCCTCGGCGGGGAGAAGATTGACGGGCTAAACTGGG
ATGTCCTGAGACAGAGCGTTACACATACGCAGACCTCACAGTCCAGCGGA
GGGCAAGCTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005068-T1.utr5p1 | KJC3_005068-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005068-T1.utr3p1 | KJC3_005068-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR025151 |
| DBxref | PFAM:PF13934 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1499042..1500286 + |
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