|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1558799..1560759+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005096-T1 ID=KJC3_005096-T1|Name=KJC3_005096-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1961bp|location=Sequence derived from alignment at ch4:1558799..1560759+ (Aspergillus niger KJC3)
CTCTCTTTCACGCCCCAAAAAAAGGGACGGCCCTATACTTCAGGCACTGC
TGTCTCCGATTGGCCGCAGCGACGGTGGGTACACCAATCAATTTCCCACC
GTGTGTCTATAGTAGAACCACTTCAAACTCCTCTCTTCCCCCCTCAAGCG
CCCCTCCGAGAAAACTATTGAGACAGTCCCTATAATAAGACCCAAGCGAA
ATGCTTCACTCGCGCCTCCGCCCTCTCCCTCGTCGACATCCCCTCCCCAA
CTCCGAGGACTCTGCCCCTCGTCCCGACTTCGCCCACCCCGAGACTGAGG
CCGACCCGGAGGAATCCTCCGAAGATCTTTTCGCCGCATTTCTCCCACAT
CTGTTCCCAGATGATGCGCCTTCTTTTCACGGTGATCCAGGCCAGCATCT
TCTCTACTCATCTCCGCGCTATGGCGATCTCGAAATCATGGTGCCTTCGT
ACCCAACCCAGAGCGGCAAGCGCTCCCAGGAGGTAGCGGAGGGGCTGTCC
CGCCCCGACGGCCAGGTCAACCATATCGAAGAGGGCCGGAAGCTGTTTGC
GCACTTCCTCTGGAGCGCGGCCATGGTTGTTGCCGAGGGGGTGGAGAAGG
CAGATGAGCTGGAAGCTAGTGGTCAATTGAAGAGTTCGGATGAGATTGCC
ATGTGGAGGGTGAGGGGAGAGAGGGTGTTGGAACTAGGCGCTGGTCAGTT
TCCTTTACTCCTTCTGAAGTATTCCTAAATTTCACTAGGTATAATACTAA
CAGTTCTTCAGGCGCCGCACTACCATCCGTCGTCTGCGCCCTCGCCCAAG
CATCCACCGTAACAGCAACCGACCACCCCTCCTCCCCCGCCTTATCAGGC
GCCATCAAATTCAACCTGGACCACAACCTACGCTCCCCCAAGGTGTCCTC
AACCTCCACAACCGTGACAATCCAACCGCACGAATGGGGCACCCTAGAGA
CCGATCCCTGGGCCGTGCAAAACAAGGCCAGCTTCAACCGCATCGTGGCC
GCAGACTGCTACTGGATGCGCTCGCAGCACGAGAACCTCGCGCGCACGAT
GTGCTGGTTCCTTGCCCCTGGCGGGCGCGTCTGGGTGGTGGCTGGATTTC
ATACTGGACGGGCGATTGTCGCAGGCTTTTTTGAGACGGCGGTGCAGGAG
GGATTGGAGATTGAGCGGATCTACGAGCGGGATTTGATTGCGGGCCAGGA
AGATGGACGCGAGGTGCGTCGCGAGTGGGTGGCGCAGAGGGAGGGAGAGG
GGCCGGAGAATAGGAGACGGTGGTGTGTGGTTGCGCTTTTGAAGAAGAGA
GATGAGTGAATGCCATCAACTATGCCAGAGGAGAGGGATGGATGGATAGA
TGTGCCATGATTGACGACAACGATACAGCATAGATATAACAGCGAGCCAG
ACATAGACATTCACATTTATCTTTTCTATACTAGTATTACCTCTATACCA
AAGTAAATCAAAATCTAAACCAGGTTATACCCTCTGAAAACACACCGTAC
AAACACCCTGTCCTTCTCTCCCCCCGAACCTGAACCGAGGATACTCAACC
CGTCCCCAAACCACCAACTTATCCTCCTCACCATCACCACCAGAAGAACC
AGCACTAGTAGTAAACCAAGCAACAAGTTCCTCCTCCGTCCAATTACAAC
TAGTCACCACCACAAACCCACCCTTCCGCACCAAACCCCTCACAATCCCA
GGATACCTCTCACACACCCTCCTCTGAATAGTCTTCCCGGACGCATGACC
ATCCTGCCCATCAGGTATAACCTCATCGGACAACGAAACCGCATCAAACG
TCCCCTTATCCAGCACGATATCAAATCCACCTTTATCATACGGGAACCAA
TCAACCTTTCCCCCAGAAGAAGAAGCGGTATCATGCACATCCCCATGCAA
AATATCCCACTCCTCAAACCGAATATTCGTATCTCCACCCTCCCCTTCCC
CCTTACCCTCC back to topCoding sequence (CDS) from alignment at ch4:1558799..1560759+ >KJC3_005096-T1 ID=KJC3_005096-T1|Name=KJC3_005096-T1|organism=Aspergillus niger KJC3|type=CDS|length=2082bp|location=Sequence derived from alignment at ch4:1558799..1560759+ (Aspergillus niger KJC3)
ATGCTTCACTCGCGCCTCCGCCCTCTCCCTCGTCGACATCCCCTCCCCAA
CTCCGAGGACTCTGCCCCTCGTCCCGACTTCGCCCACCCCGAGACTGAGG
CCGACCCGGAGGAATCCTCCGAAGATCTTTTCGCCGCATTTCTCCCACAT
CTGTTCCCAGATGATGCGCCTTCTTTTCACGGTGATCCAGGCCAGCATCT
TCTCTACTCATCTCCGCGCTATGGCGATCTCGAAATCATGGTGCCTTCGT
ACCCAACCCAGAGCGGCAAGCGCTCCCAGGAGGTAGCGGAGGGGCTGTCC
CGCCCCGACGGCCAGGTCAACCATATCGAAGAGGGCCGGAAGCTGTTTGC
GCACTTCCTCTGGAGCGCGGCCATGGTTGTTGCCGAGGGGGTGGAGAAGG
CAGATGAGCTGGAAGCTAGTGGTCAATTGAAGAGTTCGGATGAGATTGCC
ATGTGGAGGGTGAGGGGAGAGAGGGTGTTGGAACTAGGCGCTGGCGCCGC
ACTACCATCCGTCGTCTGCGCCCTCGCCCAAGCATCCACCGTAACAGCAA
CCGACCACCCCTCCTCCCCCGCCTTATCAGGCGCCATCAAATTCAACCTG
GACCACAACCTACGCTCCCCCAAGGTGTCCTCAACCTCCACAACCGTGAC
AATCCAACCGCACGAATGGGGCACCCTAGAGACCGATCCCTGGGCCGTGC
AAAACAAGGCCAGCTTCAACCGCATCGTGGCCGCAGACTGCTACTGGATG
CGCTCGCAGCACGAGAACCTCGCGCGCACGATGTGCTGGTTCCTTGCCCC
TGGCGGGCGCGTCTGGGTGGTGGCTGGATTTCATACTGGACGGGCGATTG
TCGCAGGCTTTTTTGAGACGGCGGTGCAGGAGGGATTGGAGATTGAGCGG
ATCTACGAGCGGGATTTGATTGCGGGCCAGGAAGATGGACGCGAGGTGCG
TCGCGAGTGGGTGGCGCAGAGGGAGGGAGAGGGGCCGGAGAATAGGAGAC
GGTGGTGTGTGGTTGCGCTTTTGAAGAAGAGAGATGAGTGAATGCTTCAC
TCGCGCCTCCGCCCTCTCCCTCGTCGACATCCCCTCCCCAACTCCGAGGA
CTCTGCCCCTCGTCCCGACTTCGCCCACCCCGAGACTGAGGCCGACCCGG
AGGAATCCTCCGAAGATCTTTTCGCCGCATTTCTCCCACATCTGTTCCCA
GATGATGCGCCTTCTTTTCACGGTGATCCAGGCCAGCATCTTCTCTACTC
ATCTCCGCGCTATGGCGATCTCGAAATCATGGTGCCTTCGTACCCAACCC
AGAGCGGCAAGCGCTCCCAGGAGGTAGCGGAGGGGCTGTCCCGCCCCGAC
GGCCAGGTCAACCATATCGAAGAGGGCCGGAAGCTGTTTGCGCACTTCCT
CTGGAGCGCGGCCATGGTTGTTGCCGAGGGGGTGGAGAAGGCAGATGAGC
TGGAAGCTAGTGGTCAATTGAAGAGTTCGGATGAGATTGCCATGTGGAGG
GTGAGGGGAGAGAGGGTGTTGGAACTAGGCGCTGGCGCCGCACTACCATC
CGTCGTCTGCGCCCTCGCCCAAGCATCCACCGTAACAGCAACCGACCACC
CCTCCTCCCCCGCCTTATCAGGCGCCATCAAATTCAACCTGGACCACAAC
CTACGCTCCCCCAAGGTGTCCTCAACCTCCACAACCGTGACAATCCAACC
GCACGAATGGGGCACCCTAGAGACCGATCCCTGGGCCGTGCAAAACAAGG
CCAGCTTCAACCGCATCGTGGCCGCAGACTGCTACTGGATGCGCTCGCAG
CACGAGAACCTCGCGCGCACGATGTGCTGGTTCCTTGCCCCTGGCGGGCG
CGTCTGGGTGGTGGCTGGATTTCATACTGGACGGGCGATTGTCGCAGGCT
TTTTTGAGACGGCGGTGCAGGAGGGATTGGAGATTGAGCGGATCTACGAG
CGGGATTTGATTGCGGGCCAGGAAGATGGACGCGAGGTGCGTCGCGAGTG
GGTGGCGCAGAGGGAGGGAGAGGGGCCGGAGAATAGGAGACGGTGGTGTG
TGGTTGCGCTTTTGAAGAAGAGAGATGAGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005096-T1.utr5p1 | KJC3_005096-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005096-T1.utr3p1 | KJC3_005096-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | InterPro:IPR019410 |
| DBxref | PFAM:PF10294 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1558799..1560759 + |
|
