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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1700738..1702045- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005143-T1 ID=KJC3_005143-T1|Name=KJC3_005143-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1308bp|location=Sequence derived from alignment at ch4:1700738..1702045- (Aspergillus niger KJC3)
ATGTTGCCCAGCAGCAGCAGCAGCAGCCACCAGCACCGATTCCGCCTCAA
TGGCAAACCAGTCCTATCCCAGCGCGAGAAACTCATCCAAAAGATCGAAG
CCGGAGTCCAACGAAAGGCTCACTTCAAATCACGAAACGGATGCGCCGCA
TGCAAGCAGAAACGAGTGAAATGCGACGAAGTCAAGCCAATATGCGGGAA
ATGCGCCGCAAAGGGGACGACAGCAGCCTGTCAGTACAGCAACAATAACA
ACGACAGTGAACAATCCCAGCAGACATTACCAATATACCAAATCCAACCC
AAATCCTTAACCCTAGCTGGCATCAATCAACTCGCCAACACCATTATTCC
GGCAGAGCTCCTCCTCCATCATTTCTATACCCACACCAGCAACCGCTTGA
TGGGCGGGGAAAAGCGACAATCCATATACAGATACCATATGCTTCCGCTG
TCGATCTCACAGCATTCGCTGCTTCATGCTATTCTGGCTGTGTCGGCGAG
GGATCTGCTCTGCCTACATCGCCATCATCAGGACTGCCAGCATGGTTACC
AACAAATAAAAGAGCGACAGAAACTCGTGCTATCATTCTACCACCACTAC
CACCGCTTCGCAACCCTCTACAAAGACGACCTCCTCCGCCCACCATCTAC
CGAAACAGCTAACTTAGCTCACTCGAACGCATTTCTCATGAACGTCCTAG
TCGTCGCAGATCCAGCGAGTACCTCCTACTCCTCCTCCACATCAAACTCA
TGGGTCACAAGAAAAGCCAAAGACAACATCGACGCCGCATTCTCATGGAT
CAAAGTCCAAGCTATCCATCAAACGATTCTAGAGCCCTATTGGAAATTTG
TGCCGAGTACATTTTGGTATTCTGTGTTCGTGGACGATCATCACCAGCAG
AAGGACGACCAAGAGCAACAAGAACCCTCCGTAAATACAACTACCGGCAT
AAGGAAAATCATCATCGATCATCTCGCTATTATATGTGCTATTGAACAAA
CATCTACTACGACGCCGGAAAGAAACGTCTATCTCTCCGCGTATAAGAAT
CTATGCTCTATCCTCACTACACCTATCCCTCGTACATCTCGAACACCATC
AGCTCAAATCTTCGGCTCATACATCAAATTCATGATAGAGTTAAATGCAC
ACTTTGTGAATTTACTTCGCTCTAAGGATGAACCTGCGCTGCTAATGTTC
AGCATCTGGTTAAATCGGATGAGAAGGTTAGATCTATGGTGGATGAACGA
GAGGGCGGGGAGTGAATGTGCCGCTATTTGGGAGTTTTGGAGAGCAGGAA
TAACTTGA back to topCoding sequence (CDS) from alignment at ch4:1700738..1702045- >KJC3_005143-T1 ID=KJC3_005143-T1|Name=KJC3_005143-T1|organism=Aspergillus niger KJC3|type=CDS|length=1308bp|location=Sequence derived from alignment at ch4:1700738..1702045- (Aspergillus niger KJC3)
ATGTTGCCCAGCAGCAGCAGCAGCAGCCACCAGCACCGATTCCGCCTCAA
TGGCAAACCAGTCCTATCCCAGCGCGAGAAACTCATCCAAAAGATCGAAG
CCGGAGTCCAACGAAAGGCTCACTTCAAATCACGAAACGGATGCGCCGCA
TGCAAGCAGAAACGAGTGAAATGCGACGAAGTCAAGCCAATATGCGGGAA
ATGCGCCGCAAAGGGGACGACAGCAGCCTGTCAGTACAGCAACAATAACA
ACGACAGTGAACAATCCCAGCAGACATTACCAATATACCAAATCCAACCC
AAATCCTTAACCCTAGCTGGCATCAATCAACTCGCCAACACCATTATTCC
GGCAGAGCTCCTCCTCCATCATTTCTATACCCACACCAGCAACCGCTTGA
TGGGCGGGGAAAAGCGACAATCCATATACAGATACCATATGCTTCCGCTG
TCGATCTCACAGCATTCGCTGCTTCATGCTATTCTGGCTGTGTCGGCGAG
GGATCTGCTCTGCCTACATCGCCATCATCAGGACTGCCAGCATGGTTACC
AACAAATAAAAGAGCGACAGAAACTCGTGCTATCATTCTACCACCACTAC
CACCGCTTCGCAACCCTCTACAAAGACGACCTCCTCCGCCCACCATCTAC
CGAAACAGCTAACTTAGCTCACTCGAACGCATTTCTCATGAACGTCCTAG
TCGTCGCAGATCCAGCGAGTACCTCCTACTCCTCCTCCACATCAAACTCA
TGGGTCACAAGAAAAGCCAAAGACAACATCGACGCCGCATTCTCATGGAT
CAAAGTCCAAGCTATCCATCAAACGATTCTAGAGCCCTATTGGAAATTTG
TGCCGAGTACATTTTGGTATTCTGTGTTCGTGGACGATCATCACCAGCAG
AAGGACGACCAAGAGCAACAAGAACCCTCCGTAAATACAACTACCGGCAT
AAGGAAAATCATCATCGATCATCTCGCTATTATATGTGCTATTGAACAAA
CATCTACTACGACGCCGGAAAGAAACGTCTATCTCTCCGCGTATAAGAAT
CTATGCTCTATCCTCACTACACCTATCCCTCGTACATCTCGAACACCATC
AGCTCAAATCTTCGGCTCATACATCAAATTCATGATAGAGTTAAATGCAC
ACTTTGTGAATTTACTTCGCTCTAAGGATGAACCTGCGCTGCTAATGTTC
AGCATCTGGTTAAATCGGATGAGAAGGTTAGATCTATGGTGGATGAACGA
GAGGGCGGGGAGTGAATGTGCCGCTATTTGGGAGTTTTGGAGAGCAGGAA
TAACTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1700738..1702045 - |
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