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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1770523..1774420+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005166-T1 ID=KJC3_005166-T1|Name=KJC3_005166-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3898bp|location=Sequence derived from alignment at ch4:1770523..1774420+ (Aspergillus niger KJC3)
GCTGGTTCTTGTGTTTCATTGTCAGGAACCCATTTCATCCACTCTCCTCC
TCTTTTCTCCATCCTCCTCATCCCACCTGCTAACTAGTATTCCCCATCGG
TTCTCATCTCTTCTTGGACTTCCTTCCCCAAAGTTCTTATATACCTCTTA
ATGCTTCCCCGCTTCTGACCTATCGAGTTCCCCTTCCTCGGTCATCTGAA
ACTGCCCCGTTTCAAAAACTCCATACGCATTGGAGCAGAAGATCCCCGGT
GCATTATTGGCGTGCGGGTGAGGGACACAGCCACCGGCCTTGCTCGTTGG
CGCTTCCCGCTTTGCCCACCAGCGTGCTTCCTTCCGCTGCCTTTATTTCG
CCCCCTATGTCCTCGAAAAATCATGCTGGGCTTCGATAATTGAACACCCC
CAGTGTCGTCTGCATTTGTTCCATCAAATGTAGACCCGCGTGGGCGAGAC
TCCAACTAACTACTACTACTACCATCGACCATGGAGGAGGATGTCCGGTT
GCCCACCTCAGAGCGGCTTGGCGGCCCCCATCTTGATCCCGATCAGTGTC
CCTCGACCACTTGCTCCCTTAAGCTGCATCAGGAGCTCCCGAAAAGCACG
CGACCGCGTTTGGAGAAGCAGGCCTTGTCACCGTTTGCTCGTTTGCCTCG
TACCGTCATCGAGCAGTAAGTGCACTTCCGTCGTCCCAGAGCCGGCGCAT
CGCGCGAGCGACAATCATGTGATTGATGATATCTGCTGCCTGTGCTCGGA
AGCTTTTCTGATTTAATTGGCGCCTTAGTATCCTATATGTTGCGGATGCC
AACACATTTGCGTCGCTAACACTGCTGAATCGAAAATGGCGACGCATATC
GGACTCAACCATTTTGTATGCGCACCATCTTTTCCAATGCCCGTCCTTTG
CCTTGACGCAGAAGGCTACTGAGCAGCCCGCTCACTCAAGTGATCTTATA
CTGCTCAAGCGGCAGTTCGGCGCGCAGGTCAGGCGGAATGCATTCGATGC
TTTTCTCCGGCCCCGCAGGACTCTCATCAAGCTTACTTCGACTTCCATGA
GCTCCTCGACGGCCTTCCCGCAAGGTGAAGCATTTCGCTTTTCTTTCTCT
CCAAATGCACAGCTTATCCTGTGCATCAGCTCTTCCAGAATTGTGGTTCT
CGATGTAACCGCGGATCTGGCGGTCGTGAAACACGAGCTCAAGACTTGGC
GACGGCCTTTGAACGCTGCCATTGTTGATGATGGCTCCATTCTCGCTGTG
GTTTCCTCTACTCACCGGGTCAATATTTACCGCCTTACCGATGATGAAGC
GAAACACATTCAAGATTTGACATTGAACGACGTTCCTCGGACCCTAACGC
TCTCCCCGACAGGGGGGGTCCTTGCCATTGCGTACGATGATCGGATCGAA
GTCTACGCCATCGGTGAAGGGGCACTGGCTACCGAGCGAAGAGCTGTGCG
CTGCTCCGGAGTTGACTCGGTGTCGTTTTCCTCTGATGGTGTCATGCTAC
TAGGGACTTCCGCTGATCGCGGTAATGGCGGTCTTGTCACTATAACAGTG
CCGTTCTACACAGAATCAGAAACTGAGTATTCCCCAAGGGATGCTCAGAT
CCGGATGTGGACAACACAGATTTTGTTTCCAGACGTAACCACCGGGCTTA
GCCATGCCTGTTTGCTCCCCTTGCACGCAGAAGGTGAAGGCAATTGGCTA
CTAGGGTTTGATGAACAAATAAACACGTTTCGAGCATTCGGGGTGCACAA
CACGAACTCAGGCACAGCATATTTCGTGACTCCGATGTCTGAGGATGGGT
CCCGGGAGACATCTCCCATCATGCTACCCACTGTTGACGACCTCGGGGAG
CTAGCTGCTATAGGGTTCGAGAGTTCTGGCTTATGGGTATATGGTGTACC
TGATCGTCTGGATATTGCTCCTGTAGCTCCCAACGCAAGAACATATGCTG
AAGTGGATGCTGAGCAGGGCCCTTCAATCGAGGAAGCGGCTGCTGCCCGG
GATAGCCTGTCCCGACTCCAGCAGACCATCACAAAGCCCAAAGTCCTAAT
CAATGGCCATAAGATGAGCGTTATGCCGGGAATGACAGCAGCTTGCTGGG
TACGCCACCCAAGCTGTGTGGCTGGCCGTCGTAGATTGGTAGCCGTTGCT
CCTGGTGGCGTTAGCCCTCCGACGATTGGCGAAGAAGACGTGCCGGTAGA
TGGCGGACGTGTGCTGCTGTTAGACTTCGAACGATCTGCCACAAATGGTG
ACTCAACTGAAGTCAACATCGAGGTCGGTGATGCGGAGCCGAAGATCCTG
AGTGAACCGAACTCTACCATAGATACCGAAGTCGAGCTGGAGAGGAGAAG
GACGCGATTACATCGTGGGAATACTACTTCGCCTCGGGCACGCGCATTTG
CTCGAGAATCCTATCCTTCGGCCAACTCGGTCGTCCACGCACCTCGGCAA
AATGTGCGCAGAAACAGCTCCTTCTTCTCGGGCTCTTCGACTAGCGACAT
TCAGCACATTCCGGAATCACCGTATGACAACACGCAACCTCGATCTCGGG
ACACGTTGCGTCGTGCAGCCACGGCCGCGGCTAGTGGTCGCGGACGCTAT
AACCCACGCTATCAAGACGAAGCACGCCCTGTTCAAGGCCAAAGGCCAGC
CTCACAGGCTTTCCAGGTCCCTCATGAGAGCGACGCAGACAATTGGGTTC
CACCGCCCCCTCCCTATTCTAGGGTCCCCGACGCACCGCTTCCCGATTAT
CTCCGAAGGACCCTCCTCCCTTCGCATACGGAACCGGCCCGTAGAGTCGG
TGATGTTCCAGAAGACATCCAGAGACCTCAGACCAGTCGTCTGGAACAGA
TGGTCGACGAATCTACGTCCCGAAGCTCGCTACAAAGATTGCATACCATT
ACTGGCTCACGGCTCGCGGCTCGCATGAGGAGGGGCATGAGAGACTCCGA
GTCCCCTGAACCGAACAGACGACATACCATGTTCTTTCGCAGAAGAGATT
CTGCCACAGGACCCCAACCTAACGTCCACAGCCTTGATGGAGCGCAGATG
CCTGTGTCAGAGCAAGACCCTTCGGTCAACTTTCAGGGTCAACTGCACCC
TGTCCTCAGCGGGTCTACACAGCTAAATCAATCGTCAGCAGTTCAGCGAG
CAAATTACCAGGACGTTTTGCTTGAGGAGTCTTTACCTGACGCCCCGGAC
TGGCAGGAGGCTATGCCCCCGACACAGAATGGGACTTTCAATCTGGACCA
TTACCCATACTCCATCTCCTCGCCTAATCTTCAGGTCTCGACCCTTCAAC
ATGATGCCCCCGAGGCGGTGCATGGGAGTCGACAACGTTCCACCTACTAC
CGAGGAGCAGATCGGCGCTCTCATCCTCAGAATGTCCGGCTCCCGCCTGG
GGGTATTCCACCGCTGAACCGCCGGGCATCAACCGACCCCACACTATCTA
CCAGCTCACAAGCGGCTGCACATGATCTGTGGCGGAGACGCATTGAAGAG
TGGAACGAGCAGACCATCTACGAGAGAAGCAAACGCAGAAGCAAATGTAT
AGTGATGTAGGAAGATTGCCATTATGTTGCGTGGGTTAGACTGTTTAGGC
TTTTGGCTCCGGATGTTTCGTGTTTTTTACTTAGCTCATATACCCGAGTG
GACATATATAGGCTTTGTAGAGCTGTGCATATTGATCTTCTCAACCACAT
CTTTTGACCTTGCGCAGCTTTTACTTTCTGTTTTGAACCGCAGGCAAATA
AGGTGTATACTGTGTCTCTTATTTTTAGACAAGCGCTATGATGGCTGCTT
ATCCCGGCATCTCTTCAACGGATCCCAAACGGTCAATTTGGGGTATTTGA
TACCATGTCAACTTGATCAGGATAGGAATTCTATTTCATGAAGCTCCA back to topCoding sequence (CDS) from alignment at ch4:1770523..1774420+ >KJC3_005166-T1 ID=KJC3_005166-T1|Name=KJC3_005166-T1|organism=Aspergillus niger KJC3|type=CDS|length=2514bp|location=Sequence derived from alignment at ch4:1770523..1774420+ (Aspergillus niger KJC3)
ATGAGCTCCTCGACGGCCTTCCCGCAAGGTGAAGCATTTCGCTTTTCTTT
CTCTCCAAATGCACAGCTTATCCTGTGCATCAGCTCTTCCAGAATTGTGG
TTCTCGATGTAACCGCGGATCTGGCGGTCGTGAAACACGAGCTCAAGACT
TGGCGACGGCCTTTGAACGCTGCCATTGTTGATGATGGCTCCATTCTCGC
TGTGGTTTCCTCTACTCACCGGGTCAATATTTACCGCCTTACCGATGATG
AAGCGAAACACATTCAAGATTTGACATTGAACGACGTTCCTCGGACCCTA
ACGCTCTCCCCGACAGGGGGGGTCCTTGCCATTGCGTACGATGATCGGAT
CGAAGTCTACGCCATCGGTGAAGGGGCACTGGCTACCGAGCGAAGAGCTG
TGCGCTGCTCCGGAGTTGACTCGGTGTCGTTTTCCTCTGATGGTGTCATG
CTACTAGGGACTTCCGCTGATCGCGGTAATGGCGGTCTTGTCACTATAAC
AGTGCCGTTCTACACAGAATCAGAAACTGAGTATTCCCCAAGGGATGCTC
AGATCCGGATGTGGACAACACAGATTTTGTTTCCAGACGTAACCACCGGG
CTTAGCCATGCCTGTTTGCTCCCCTTGCACGCAGAAGGTGAAGGCAATTG
GCTACTAGGGTTTGATGAACAAATAAACACGTTTCGAGCATTCGGGGTGC
ACAACACGAACTCAGGCACAGCATATTTCGTGACTCCGATGTCTGAGGAT
GGGTCCCGGGAGACATCTCCCATCATGCTACCCACTGTTGACGACCTCGG
GGAGCTAGCTGCTATAGGGTTCGAGAGTTCTGGCTTATGGGTATATGGTG
TACCTGATCGTCTGGATATTGCTCCTGTAGCTCCCAACGCAAGAACATAT
GCTGAAGTGGATGCTGAGCAGGGCCCTTCAATCGAGGAAGCGGCTGCTGC
CCGGGATAGCCTGTCCCGACTCCAGCAGACCATCACAAAGCCCAAAGTCC
TAATCAATGGCCATAAGATGAGCGTTATGCCGGGAATGACAGCAGCTTGC
TGGGTACGCCACCCAAGCTGTGTGGCTGGCCGTCGTAGATTGGTAGCCGT
TGCTCCTGGTGGCGTTAGCCCTCCGACGATTGGCGAAGAAGACGTGCCGG
TAGATGGCGGACGTGTGCTGCTGTTAGACTTCGAACGATCTGCCACAAAT
GGTGACTCAACTGAAGTCAACATCGAGGTCGGTGATGCGGAGCCGAAGAT
CCTGAGTGAACCGAACTCTACCATAGATACCGAAGTCGAGCTGGAGAGGA
GAAGGACGCGATTACATCGTGGGAATACTACTTCGCCTCGGGCACGCGCA
TTTGCTCGAGAATCCTATCCTTCGGCCAACTCGGTCGTCCACGCACCTCG
GCAAAATGTGCGCAGAAACAGCTCCTTCTTCTCGGGCTCTTCGACTAGCG
ACATTCAGCACATTCCGGAATCACCGTATGACAACACGCAACCTCGATCT
CGGGACACGTTGCGTCGTGCAGCCACGGCCGCGGCTAGTGGTCGCGGACG
CTATAACCCACGCTATCAAGACGAAGCACGCCCTGTTCAAGGCCAAAGGC
CAGCCTCACAGGCTTTCCAGGTCCCTCATGAGAGCGACGCAGACAATTGG
GTTCCACCGCCCCCTCCCTATTCTAGGGTCCCCGACGCACCGCTTCCCGA
TTATCTCCGAAGGACCCTCCTCCCTTCGCATACGGAACCGGCCCGTAGAG
TCGGTGATGTTCCAGAAGACATCCAGAGACCTCAGACCAGTCGTCTGGAA
CAGATGGTCGACGAATCTACGTCCCGAAGCTCGCTACAAAGATTGCATAC
CATTACTGGCTCACGGCTCGCGGCTCGCATGAGGAGGGGCATGAGAGACT
CCGAGTCCCCTGAACCGAACAGACGACATACCATGTTCTTTCGCAGAAGA
GATTCTGCCACAGGACCCCAACCTAACGTCCACAGCCTTGATGGAGCGCA
GATGCCTGTGTCAGAGCAAGACCCTTCGGTCAACTTTCAGGGTCAACTGC
ACCCTGTCCTCAGCGGGTCTACACAGCTAAATCAATCGTCAGCAGTTCAG
CGAGCAAATTACCAGGACGTTTTGCTTGAGGAGTCTTTACCTGACGCCCC
GGACTGGCAGGAGGCTATGCCCCCGACACAGAATGGGACTTTCAATCTGG
ACCATTACCCATACTCCATCTCCTCGCCTAATCTTCAGGTCTCGACCCTT
CAACATGATGCCCCCGAGGCGGTGCATGGGAGTCGACAACGTTCCACCTA
CTACCGAGGAGCAGATCGGCGCTCTCATCCTCAGAATGTCCGGCTCCCGC
CTGGGGGTATTCCACCGCTGAACCGCCGGGCATCAACCGACCCCACACTA
TCTACCAGCTCACAAGCGGCTGCACATGATCTGTGGCGGAGACGCATTGA
AGAGTGGAACGAGCAGACCATCTACGAGAGAAGCAAACGCAGAAGCAAAT
GTATAGTGATGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005166-T1.utr5p1 | KJC3_005166-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005166-T1.utr3p1 | KJC3_005166-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR015943 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1770523..1774420 + |
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