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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1821874..1822981- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005178-T1 ID=KJC3_005178-T1|Name=KJC3_005178-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1108bp|location=Sequence derived from alignment at ch4:1821874..1822981- (Aspergillus niger KJC3)
CTCTCACCGTCGTCAACCTCAACCACCCCCCCAAACAACCGTCAAAATGG
AGAACGAGAAGGGAGAGATCGTCGATCTGTATGTATCCATTCCTTCCAAA
ACCAAATAATGTTGAGTTTGTGTGTGGTGCGAGATGGAGATATGGATGCG
ATTCGGTGCTCGATATACGATGATATGATATGGCTTGGAGAGATATATCG
CGGATATGTGCTACGGCGGGGAACATTATTGTCGAATCGACGAGGACATG
GTTTTTAAATCAGGATCTACGATATGGAAGAGACGGAATTGAAGAAATAT
ACGGAGAAAGGACAGGAGAAGGAAAGAGGAGGAATACCGAACACCGATCG
CATCGCATATCTCTATCATCATCATCATCCAACGTCTCAATACATGCGCA
ATCGCCAAAAGGACAAGCCAAGGCAAAATGCTAATATTAAATTTAACAGC
TACGTCCCCCGCAAGTGCAGCGCCACCAACCGCATCATCAAGGCCAACGA
CCACGCCTCCGTCCAGATCTCCATCGCCAAGGTTGACGAGAACGGCCGCT
ACACCGGTGAGAACCACACCTACGCTCTGTGCGGCTTCATCCGTGCCCGT
GGTGAGAGCGATGACTCCCTGAACCGCCTTGCCCAGCGTGACGGCTACGT
CCGCAACGTCTGGACCGCTGCCCGCCAGCGCTAAGCACTTTTCCTTTTTG
AGAGAGACGTGCGGTGTTGGGATGAATTTGGAAGTGGGTGGTTATTGATG
ATGGTACGTTTTACGCCACTTTACACCCATGTCTTTACATGGCATATATG
ATTATTATAAAAAGAACGCAATGCTAATGATTGTGGTGGCACAGGATGAA
GATATTTAACTATATCTCCACAAAAAAGGGAATCCTTTCACACAATGAAA
TGAAAAAACTTTTCCAATTTAACTTTTCTATCAACAATTCAATTTCCATC
CTGCTTTCATTTTTTATCTCCTCTCTTGTGTAGGGTGGAGTATATCCCCC
TCTACATGCCCTCTTCATCTCTCTCGTCCGGGGTACCCTTTTCCTATTTT
TTATCTTTCGTCTGGTACGGAATACTGTAGCAAGCATACTTAGATATCAT
CTCCACAA back to topCoding sequence (CDS) from alignment at ch4:1821874..1822981- >KJC3_005178-T1 ID=KJC3_005178-T1|Name=KJC3_005178-T1|organism=Aspergillus niger KJC3|type=CDS|length=534bp|location=Sequence derived from alignment at ch4:1821874..1822981- (Aspergillus niger KJC3)
CTACGTCCCCCGCAAGTGCAGCGCCACCAACCGCATCATCAAGGCCAACG
ACCACGCCTCCGTCCAGATCTCCATCGCCAAGGTTGACGAGAACGGCCGC
TACACCGGTGAGAACCACACCTACGCTCTGTGCGGCTTCATCCGTGCCCG
TGGTGAGAGCGATGACTCCCTGAACCGCCTTGCCCAGCGTGACGGCTACG
TCCGCAACGTCTGGACCGCTGCCCGCCAGCGCTAAATGGAGAACGAGAAG
GGAGAGATCGTCGATCTCTACGTCCCCCGCAAGTGCAGCGCCACCAACCG
CATCATCAAGGCCAACGACCACGCCTCCGTCCAGATCTCCATCGCCAAGG
TTGACGAGAACGGCCGCTACACCGGTGAGAACCACACCTACGCTCTGTGC
GGCTTCATCCGTGCCCGTGGTGAGAGCGATGACTCCCTGAACCGCCTTGC
CCAGCGTGACGGCTACGTCCGCAACGTCTGGACCGCTGCCCGCCAGCGCT
AAATGGAGAACGAGAAGGGAGAGATCGTCGATCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005178-T1.utr5p1 | KJC3_005178-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018279 |
| DBxref | InterPro:IPR001931 |
| DBxref | InterPro:IPR038579 |
| DBxref | PFAM:PF01249 |
| Product | 40S ribosomal protein S21 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1821874..1822981 - |
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